MD05G1060500.v1.1

No description available

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
Physical Location & Seq
Reverse (-)
10493378 .. 10494337
960 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1060500.v1.1.491

Sequence Viewer

Length: 282 bp
ATGGAAGGCGAAAATATGAGAGCATTCGACATGGGCGCACTAAGAACAGGTCTCCCACAAAAGAGAGGGTTGTCAAGGTACTACTCAGGGAAATCAAGATCATTTACGTGCATGGCCGATGTACGAAGCGTAGAAGATCTGAAGAAACCGGAAAATCCCGATGCGAAAAAGAGGAAGAAACATTCGGAGAGGAAGAACTTTCCTGTTCCAGCCTACCCTCCTTATCCATGTCGAAGAGTTTCTAGCACCACCCAATGTACTGCACCCTGCGTTGGCGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

94

Amino Acids

10.5

Weight (kDa)

9.85

Isoelectric Point (pI)

60.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0015084)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 114
AcuI CTGAAG 1 cut(s) 161
AfaI GTAC 3 cut(s) 80, 123, 259
AfiI CCNNNNNNNGG 1 cut(s) 272
Alw26I GTCTC 1 cut(s) 56
AoxI GGCC 1 cut(s) 114
Asp700I GAANNNNTTC 1 cut(s) 238
AspLEI GCGC 1 cut(s) 38
BcoDI GTCTC 1 cut(s) 56
BfaI CTAG 1 cut(s) 243
BglII AGATCT 1 cut(s) 136
BmsI GCATC 1 cut(s) 151
BsaAI YACGTR 1 cut(s) 108
BsaI GGTCTC 1 cut(s) 56
BsaWI WCCGGW 1 cut(s) 148
Bsc4I CCNNNNNNNGG 1 cut(s) 272
BseLI CCNNNNNNNGG 1 cut(s) 272
BseMII CTCAG 1 cut(s) 99
BsgI GTGCAG 1 cut(s) 246
BshFI GGCC 1 cut(s) 116
BsiSI CCGG 1 cut(s) 149
BslI CCNNNNNNNGG 1 cut(s) 272
BsmAI GTCTC 1 cut(s) 56
BsmI GAATGC 1 cut(s) 23
BsnI GGCC 1 cut(s) 116
Bso31I GGTCTC 1 cut(s) 56
Bsp143I GATC 2 cut(s) 98, 136
BspANI GGCC 1 cut(s) 116
BspCNI CTCAG 1 cut(s) 98
BspTNI GGTCTC 1 cut(s) 56
BssMI GATC 2 cut(s) 98, 136
Bst6I CTCTTC 1 cut(s) 229
BstBAI YACGTR 1 cut(s) 108
BstDEI CTNAG 2 cut(s) 41, 85
BstHHI GCGC 1 cut(s) 38
BstKTI GATC 2 cut(s) 101, 139
BstMAI GTCTC 1 cut(s) 56
BstMBI GATC 2 cut(s) 98, 136
BstX2I RGATCY 1 cut(s) 136
BstYI RGATCY 1 cut(s) 136
BsuRI GGCC 1 cut(s) 116
CfoI GCGC 1 cut(s) 38
Csp6I GTAC 3 cut(s) 79, 122, 258
CviAII CATG 3 cut(s) 31, 112, 228
CviJI RGCY 2 cut(s) 116, 212
CviKI_1 RGCY 2 cut(s) 116, 212
CviQI GTAC 3 cut(s) 79, 122, 258
DdeI CTNAG 2 cut(s) 41, 85
DpnI GATC 2 cut(s) 100, 138
DpnII GATC 2 cut(s) 98, 136
EaeI YGGCCR 1 cut(s) 114
Eam1104I CTCTTC 1 cut(s) 229
EarI CTCTTC 1 cut(s) 229
Eco31I GGTCTC 1 cut(s) 56
Eco57I CTGAAG 1 cut(s) 161
FaeI CATG 3 cut(s) 34, 115, 231
FaiI YATR 4 cut(s) 17, 32, 113, 229
FatI CATG 3 cut(s) 30, 111, 227
FspBI CTAG 1 cut(s) 243
GlaI GCGC 1 cut(s) 37
HaeIII GGCC 1 cut(s) 116
HapII CCGG 1 cut(s) 149
HhaI GCGC 1 cut(s) 38
Hin1II CATG 3 cut(s) 34, 115, 231
Hin6I GCGC 1 cut(s) 36
HinP1I GCGC 1 cut(s) 36
HpaII CCGG 1 cut(s) 149
Hpy188I TCNGA 2 cut(s) 141, 187
Hpy188III TCNNGA 2 cut(s) 96, 158
HpyCH4IV ACGT 1 cut(s) 107
HpyCH4V TGCA 2 cut(s) 111, 263
HpyF3I CTNAG 2 cut(s) 41, 85
HpySE526I ACGT 1 cut(s) 107
Hsp92II CATG 3 cut(s) 34, 115, 231
HspAI GCGC 1 cut(s) 36
Kzo9I GATC 2 cut(s) 98, 136
LpnPI CCDG 5 cut(s) 33, 72, 162, 216, 222
LweI GCATC 1 cut(s) 151
MaeI CTAG 1 cut(s) 243
MaeII ACGT 1 cut(s) 107
MalI GATC 2 cut(s) 100, 138
MboI GATC 2 cut(s) 98, 136
MboII GAAGA 5 cut(s) 146, 154, 187, 205, 246
MflI RGATCY 1 cut(s) 136
MnlI CCTC 4 cut(s) 59, 165, 183, 228
MroXI GAANNNNTTC 1 cut(s) 238
MslI CAYNNNNRTG 1 cut(s) 106
MspI CCGG 1 cut(s) 149
Mva1269I GAATGC 1 cut(s) 23
NdeII GATC 2 cut(s) 98, 136
NlaIII CATG 3 cut(s) 34, 115, 231
PctI GAATGC 1 cut(s) 23
PdmI GAANNNNTTC 1 cut(s) 238
Ppu21I YACGTR 1 cut(s) 108
PsuI RGATCY 1 cut(s) 136
RsaI GTAC 3 cut(s) 80, 123, 259
RsaNI GTAC 3 cut(s) 79, 122, 258
RseI CAYNNNNRTG 1 cut(s) 106
Sau3AI GATC 2 cut(s) 98, 136
SetI ASST 3 cut(s) 52, 80, 110
SfaNI GCATC 1 cut(s) 151
SmiMI CAYNNNNRTG 1 cut(s) 106
SspMI CTAG 1 cut(s) 243
TaiI ACGT 1 cut(s) 110
TaqI TCGA 2 cut(s) 27, 232
TatI WGTACW 1 cut(s) 257
XmnI GAANNNNTTC 1 cut(s) 238
XspI CTAG 1 cut(s) 243
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.