Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0019576

Physical Location & Seq

Genomic Coordinates Reverse (-)

1061300 .. 1063234

Gene Structure 1935 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G04070.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1080 bp

ATGATAAGCAAGGATCCAAGATCGAGTTTACCTCCAGGGTTTCGATTTCATCCAACAGATGAAGAACTCATTCTCCATTACCTAAGGAAGAAAGTTTCCTCTTCCCCAGTCCCGCTTTCGATTATCGCCGATGTCGATATCTACAAATCCGATCCATGGGATTTACCAGCTAAGGCTCCATTTGGGGAGAAAGAGTGGTATTTTTTCAGTCCGAGGGATAGGAAATATCCAAACGGAGCAAGACCAAACAGAGCAGCTGCGTCTGGATATTGGAAAGCAACCGGAACAGATAAATTGATTGCGGTACCAAATGGTGAAGGGTTTCATGAAAACATTGGTATAAAAAAAGCTCTTGTGTTTTATAGAGGAAAGCCTCCAAAAGGTGTTAAAACCAATTGGATCATGCATGAATATCGTCTTGCCGATTCATTATCTCCCAAAAGAATTAACTCTTCTAGGAGCGGTGGTAGCGAAGTTAATAATAATTTTGGAGATAGGAATTCTAAAGAATATTCGATGAGACTGGATGATTGGGTTCTTTGCCGGATTTACAAGAAATCACACGCTTCATTGTCATCACCTGATGTTGCTTTGGTCACAAGCAATCAAGAGCATGAGGAAAATGACAACGAACCATTCGTAGACCGCGGAACCTTTTTGCCAAATTTGCAAAATGATCAACCCCTTAAACGCCAGAAGTCTTCTTGTTCGTTCTCAAACTTACTAGACGCTACAGATTTGACGTTTCTCGCAAATTTTCTAAACGAAACCCCGGAAAATCGTTCTGAATCAGATTTTTCTTTCATGATTGGCAATTTCTCTAATCCTGACATTTACGGAAACCATTACTTGGATCAGAAGTTACCGCAGTTGAGCTCTCCCACTTCAGAGACAAGCGGCATCGGAAGCAAAAGAGAGAGAGTGGATTTTGCGGAAGAAACGATAAACGCTTCGAAGAAGATGATGAACACATATAGTTACAATAATAGTATAGATCAAATGGATCATAGTATGATGCAACAACCTAGTTTCCTGAACCAGGAACTCATGATGAGTTCTCACCTTCAATATCAAGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006521 GO:0006950 GO:0007275 GO:0008150 GO:0009413 GO:0009415 GO:0009628 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009891 GO:0009893 GO:0010035 GO:0010154 GO:0010364 GO:0010365 GO:0010468 GO:0010556 GO:0010565 GO:0010817 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031335 GO:0031337 GO:0032350 GO:0032352 GO:0032501 GO:0032502 GO:0033238 GO:0033240 GO:0042221 GO:0042762 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045764 GO:0046885 GO:0046886 GO:0048316 GO:0048518 GO:0048522 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051176 GO:0051252 GO:0060255 GO:0061458 GO:0062012 GO:0062013 GO:0065007 GO:0065008 GO:0080090 GO:0097159 GO:0140110 GO:1900908 GO:1900910 GO:1900911 GO:1900913 GO:1901363 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

359

Amino Acids

40.85

Weight (kDa)

6.52

Isoelectric Point (pI)

43.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	11 - 140	1.9e-50	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019576)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04070 AT3G04070
malus_domestica	MD12G1000800.v1.1 MD14G1001000.v1.1
prunus_persica	Prupe.7G001200_v2.0.a1
pyrus_communis	pycom12g00080 pycom49g00050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	304
AccB1I	GGYRCC	1 cut(s)	304
AccB7I	CCANNNNNTGG	1 cut(s)	850
AccBSI	CCGCTC	1 cut(s)	462
AccI	GTMKAC	1 cut(s)	642
AccII	CGCG	1 cut(s)	648
AciI	CCGC	8 cut(s)	113, 302, 462, 646, 648, 866, 897, 932
AclWI	GGATC	6 cut(s)	8, 21, 146, 407, 861, 1011
AcsI	RAATTY	3 cut(s)	499, 664, 754
AcuI	CTGAAG	1 cut(s)	870
AfaI	GTAC	1 cut(s)	306
AfiI	CCNNNNNNNGG	4 cut(s)	156, 380, 850, 1039
AgsI	TTSAA	1 cut(s)	1067
AjnI	CCWGG	2 cut(s)	34, 1038
AloI	GAACNNNNNNTCC	2 cut(s)	57, 89
AluBI	AGCT	4 cut(s)	170, 257, 350, 876
AluI	AGCT	4 cut(s)	170, 257, 350, 876
Alw21I	GWGCWC	1 cut(s)	878
Alw26I	GTCTC	2 cut(s)	514, 884
AlwI	GGATC	6 cut(s)	8, 21, 146, 407, 861, 1011
ApeKI	GCWGC	2 cut(s)	254, 257
ApoI	RAATTY	3 cut(s)	499, 664, 754
Asp700I	GAANNNNTTC	2 cut(s)	69, 321
Asp718I	GGTACC	1 cut(s)	304
AsuC2I	CCSGG	1 cut(s)	773
AsuHPI	GGTGA	3 cut(s)	326, 570, 1052
AsuII	TTCGAA	1 cut(s)	953
AxyI	CCTNAGG	1 cut(s)	83
BamHI	GGATCC	1 cut(s)	13
BanI	GGYRCC	1 cut(s)	304
BanII	GRGCYC	1 cut(s)	878
BbsI	GAAGAC	1 cut(s)	693
Bbv12I	GWGCWC	1 cut(s)	878
BbvI	GCAGC	2 cut(s)	244, 266
BcgI	CGANNNNNNTGC	2 cut(s)	395, 429
BciT130I	CCWGG	2 cut(s)	36, 1040
BclI	TGATCA	1 cut(s)	676
BcnI	CCSGG	1 cut(s)	773
BcoDI	GTCTC	2 cut(s)	514, 884
BfaI	CTAG	4 cut(s)	456, 725, 1026, 1078
BfmI	CTRYAG	1 cut(s)	732
BisI	GCNGC	3 cut(s)	255, 258, 898
BlsI	GCNGC	3 cut(s)	256, 259, 899
Bme1390I	CCNGG	3 cut(s)	36, 773, 1040
BmiI	GGNNCC	4 cut(s)	15, 177, 306, 652
BmrFI	CCNGG	3 cut(s)	36, 773, 1040
BmrI	ACTGGG	1 cut(s)	101
BmsI	GCATC	2 cut(s)	909, 1005
BmuI	ACTGGG	1 cut(s)	101
BpiI	GAAGAC	1 cut(s)	693
BplI	GAGNNNNNCTC	2 cut(s)	16, 48
BpmI	CTGGAG	1 cut(s)	18
Bpu10I	CCTNAGC	1 cut(s)	171
Bpu14I	TTCGAA	1 cut(s)	953
BpuMI	CCSGG	1 cut(s)	773
BsaJI	CCNNGG	5 cut(s)	35, 155, 212, 646, 771
BsaWI	WCCGGW	1 cut(s)	281
BsaXI	ACNNNNNCTCC	6 cut(s)	57, 87, 179, 209, 451, 481
Bsc4I	CCNNNNNNNGG	4 cut(s)	156, 380, 850, 1039
Bse1I	ACTGG	2 cut(s)	107, 528
Bse21I	CCTNAGG	1 cut(s)	83
BseBI	CCWGG	2 cut(s)	36, 1040
BseDI	CCNNGG	5 cut(s)	35, 155, 212, 646, 771
BseGI	GGATG	2 cut(s)	49, 532
BseLI	CCNNNNNNNGG	4 cut(s)	156, 380, 850, 1039
BseNI	ACTGG	2 cut(s)	107, 528
BseXI	GCAGC	2 cut(s)	244, 266
Bsh1236I	CGCG	1 cut(s)	648
BshNI	GGYRCC	1 cut(s)	304
BsiHKAI	GWGCWC	1 cut(s)	878
BsiSI	CCGG	3 cut(s)	282, 544, 773
BslFI	GGGAC	1 cut(s)	95
BslI	CCNNNNNNNGG	4 cut(s)	156, 380, 850, 1039
BsmAI	GTCTC	2 cut(s)	514, 884
BsmFI	GGGAC	1 cut(s)	95
Bsp119I	TTCGAA	1 cut(s)	953
Bsp1286I	GDGCHC	1 cut(s)	878
Bsp143I	GATC	8 cut(s)	13, 20, 151, 399, 676, 853, 994, 1003
Bsp19I	CCATGG	1 cut(s)	155
BspACI	CCGC	8 cut(s)	113, 302, 462, 646, 648, 866, 897, 932
BspFNI	CGCG	1 cut(s)	648
BspHI	TCATGA	3 cut(s)	325, 804, 1047
BspLI	GGNNCC	4 cut(s)	15, 177, 306, 652
BspPI	GGATC	6 cut(s)	8, 21, 146, 407, 861, 1011
BspT104I	TTCGAA	1 cut(s)	953
BspT107I	GGYRCC	1 cut(s)	304
BsrBI	CCGCTC	1 cut(s)	462
BsrI	ACTGG	2 cut(s)	107, 528
BssECI	CCNNGG	5 cut(s)	35, 155, 212, 646, 771
BssMI	GATC	8 cut(s)	13, 20, 151, 399, 676, 853, 994, 1003
BssT1I	CCWWGG	1 cut(s)	155
Bst2UI	CCWGG	2 cut(s)	36, 1040
Bst6I	CTCTTC	2 cut(s)	106, 457
BstBI	TTCGAA	1 cut(s)	953
BstDEI	CTNAG	2 cut(s)	83, 171
BstDSI	CCRYGG	2 cut(s)	155, 646
BstENI	CCTNNNNNAGG	2 cut(s)	378, 1037
BstF5I	GGATG	2 cut(s)	49, 532
BstFNI	CGCG	1 cut(s)	648
BstKTI	GATC	8 cut(s)	16, 23, 154, 402, 679, 856, 997, 1006
BstMAI	GTCTC	2 cut(s)	514, 884
BstMBI	GATC	8 cut(s)	13, 20, 151, 399, 676, 853, 994, 1003
BstMWI	GCNNNNNNNGC	3 cut(s)	468, 667, 906
BstNI	CCWGG	2 cut(s)	36, 1040
BstSCI	CCNGG	3 cut(s)	34, 771, 1038
BstSFI	CTRYAG	1 cut(s)	732
BstUI	CGCG	1 cut(s)	648
BstV1I	GCAGC	2 cut(s)	244, 266
BstV2I	GAAGAC	1 cut(s)	693
BstX2I	RGATCY	1 cut(s)	13
BstYI	RGATCY	1 cut(s)	13
Bsu36I	CCTNAGG	1 cut(s)	83
BtgI	CCRYGG	2 cut(s)	155, 646
BtsCI	GGATG	2 cut(s)	49, 532
CciI	TCATGA	3 cut(s)	325, 804, 1047
Cfr42I	CCGCGG	1 cut(s)	649
CseI	GACGC	2 cut(s)	249, 737
Csp6I	GTAC	1 cut(s)	305
CviAII	CATG	7 cut(s)	156, 326, 403, 407, 614, 805, 1048
CviJI	RGCY	7 cut(s)	170, 176, 257, 350, 373, 876, 1077
CviKI_1	RGCY	7 cut(s)	170, 176, 257, 350, 373, 876, 1077
CviQI	GTAC	1 cut(s)	305
DdeI	CTNAG	2 cut(s)	83, 171
DpnI	GATC	8 cut(s)	15, 22, 153, 401, 678, 855, 996, 1005
DpnII	GATC	8 cut(s)	13, 20, 151, 399, 676, 853, 994, 1003
Eam1104I	CTCTTC	2 cut(s)	106, 457
EarI	CTCTTC	2 cut(s)	106, 457
Ecl136II	GAGCTC	1 cut(s)	876
Eco130I	CCWWGG	1 cut(s)	155
Eco24I	GRGCYC	1 cut(s)	878
Eco32I	GATATC	1 cut(s)	139
Eco53kI	GAGCTC	1 cut(s)	876
Eco57I	CTGAAG	1 cut(s)	870
Eco81I	CCTNAGG	1 cut(s)	83
EcoICRI	GAGCTC	1 cut(s)	876
EcoNI	CCTNNNNNAGG	2 cut(s)	378, 1037
EcoRI	GAATTC	1 cut(s)	499
EcoRII	CCWGG	2 cut(s)	34, 1038
EcoRV	GATATC	1 cut(s)	139
EcoT14I	CCWWGG	1 cut(s)	155
EcoT22I	ATGCAT	1 cut(s)	408
EcoT38I	GRGCYC	1 cut(s)	878
ErhI	CCWWGG	1 cut(s)	155
FaeI	CATG	7 cut(s)	159, 329, 406, 410, 617, 808, 1051
FaqI	GGGAC	1 cut(s)	95
FatI	CATG	7 cut(s)	155, 325, 402, 406, 613, 804, 1047
FauI	CCCGC	1 cut(s)	120
FbaI	TGATCA	1 cut(s)	676
FblI	GTMKAC	1 cut(s)	642
Fnu4HI	GCNGC	3 cut(s)	255, 258, 898
FokI	GGATG	2 cut(s)	36, 539
FriOI	GRGCYC	1 cut(s)	878
Fsp4HI	GCNGC	3 cut(s)	255, 258, 898
FspBI	CTAG	4 cut(s)	456, 725, 1026, 1078
GluI	GCNGC	3 cut(s)	255, 258, 898
GsuI	CTGGAG	1 cut(s)	18
HapII	CCGG	3 cut(s)	282, 544, 773
HgaI	GACGC	2 cut(s)	249, 737
Hin1II	CATG	7 cut(s)	159, 329, 406, 410, 617, 808, 1051
HinfI	GANTC	2 cut(s)	425, 788
HpaII	CCGG	3 cut(s)	282, 544, 773
HphI	GGTGA	3 cut(s)	326, 570, 1052
Hpy166II	GTNNAC	2 cut(s)	29, 643
Hpy188I	TCNGA	7 cut(s)	151, 213, 787, 793, 858, 889, 905
Hpy188III	TCNNGA	7 cut(s)	264, 326, 608, 805, 827, 1033, 1048
Hpy8I	GTNNAC	2 cut(s)	29, 643
HpyAV	CCTTC	2 cut(s)	311, 1073
HpyCH4IV	ACGT	1 cut(s)	743
HpyCH4V	TGCA	3 cut(s)	406, 670, 1018
HpyF10VI	GCNNNNNNNGC	3 cut(s)	468, 667, 906
HpyF3I	CTNAG	2 cut(s)	83, 171
HpySE526I	ACGT	1 cut(s)	743
Hsp92II	CATG	7 cut(s)	159, 329, 406, 410, 617, 808, 1051
KpnI	GGTACC	1 cut(s)	308
Ksp22I	TGATCA	1 cut(s)	676
KspI	CCGCGG	1 cut(s)	649
Kzo9I	GATC	8 cut(s)	13, 20, 151, 399, 676, 853, 994, 1003
LmnI	GCTCC	3 cut(s)	181, 236, 459
Lsp1109I	GCAGC	2 cut(s)	244, 266
LweI	GCATC	2 cut(s)	909, 1005
MaeI	CTAG	4 cut(s)	456, 725, 1026, 1078
MaeII	ACGT	1 cut(s)	743
MaeIII	GTNAC	3 cut(s)	595, 861, 977
MalI	GATC	8 cut(s)	15, 22, 153, 401, 678, 855, 996, 1005
MbiI	CCGCTC	1 cut(s)	462
MboI	GATC	8 cut(s)	13, 20, 151, 399, 676, 853, 994, 1003
MboII	GAAGA	8 cut(s)	74, 93, 100, 444, 693, 947, 967, 970
MfeI	CAATTG	1 cut(s)	394
MflI	RGATCY	1 cut(s)	13
MhlI	GDGCHC	1 cut(s)	878
MluCI	AATT	8 cut(s)	293, 394, 444, 484, 499, 664, 754, 814
MmeI	TCCRAC	1 cut(s)	77
MnlI	CCTC	6 cut(s)	42, 109, 207, 359, 384, 610
Mph1103I	ATGCAT	1 cut(s)	408
MroXI	GAANNNNTTC	2 cut(s)	69, 321
MseI	TTAA	4 cut(s)	387, 447, 477, 687
MspA1I	CMGCKG	2 cut(s)	257, 648
MspI	CCGG	3 cut(s)	282, 544, 773
MspR9I	CCNGG	3 cut(s)	36, 773, 1040
MunI	CAATTG	1 cut(s)	394
MvaI	CCWGG	2 cut(s)	36, 1040
MvnI	CGCG	1 cut(s)	648
MwoI	GCNNNNNNNGC	3 cut(s)	468, 667, 906
NciI	CCSGG	1 cut(s)	773
NcoI	CCATGG	1 cut(s)	155
NdeII	GATC	8 cut(s)	13, 20, 151, 399, 676, 853, 994, 1003
NlaIII	CATG	7 cut(s)	159, 329, 406, 410, 617, 808, 1051
NlaIV	GGNNCC	4 cut(s)	15, 177, 306, 652
NmuCI	GTSAC	1 cut(s)	595
NsiI	ATGCAT	1 cut(s)	408
NspV	TTCGAA	1 cut(s)	953
PagI	TCATGA	3 cut(s)	325, 804, 1047
PcsI	WCGNNNNNNNCGW	2 cut(s)	132, 636
PdmI	GAANNNNTTC	2 cut(s)	69, 321
PfeI	GAWTC	2 cut(s)	425, 788
PflMI	CCANNNNNTGG	1 cut(s)	850
PkrI	GCNGC	3 cut(s)	256, 259, 899
Psp124BI	GAGCTC	1 cut(s)	878
Psp6I	CCWGG	2 cut(s)	34, 1038
PspGI	CCWGG	2 cut(s)	34, 1038
PspN4I	GGNNCC	4 cut(s)	15, 177, 306, 652
PsuI	RGATCY	1 cut(s)	13
PvuII	CAGCTG	1 cut(s)	257
RsaI	GTAC	1 cut(s)	306
RsaNI	GTAC	1 cut(s)	305
SacI	GAGCTC	1 cut(s)	878
SacII	CCGCGG	1 cut(s)	649
SaqAI	TTAA	4 cut(s)	387, 447, 477, 687
SatI	GCNGC	3 cut(s)	255, 258, 898
Sau3AI	GATC	8 cut(s)	13, 20, 151, 399, 676, 853, 994, 1003
ScrFI	CCNGG	3 cut(s)	36, 773, 1040
SduI	GDGCHC	1 cut(s)	878
SfaNI	GCATC	2 cut(s)	909, 1005
SfcI	CTRYAG	1 cut(s)	732
Sfr303I	CCGCGG	1 cut(s)	649
SfuI	TTCGAA	1 cut(s)	953
SgrBI	CCGCGG	1 cut(s)	649
Sse9I	AATT	8 cut(s)	293, 394, 444, 484, 499, 664, 754, 814
SsiI	CCGC	8 cut(s)	113, 302, 462, 646, 648, 866, 897, 932
SspI	AATATT	1 cut(s)	512
SspMI	CTAG	4 cut(s)	456, 725, 1026, 1078
SstI	GAGCTC	1 cut(s)	878
StyD4I	CCNGG	3 cut(s)	34, 771, 1038
StyI	CCWWGG	1 cut(s)	155
TaiI	ACGT	1 cut(s)	746
TaqI	TCGA	6 cut(s)	23, 43, 119, 135, 515, 953
TasI	AATT	8 cut(s)	293, 394, 444, 484, 499, 664, 754, 814
TauI	GCSGC	1 cut(s)	900
TfiI	GAWTC	2 cut(s)	425, 788
Tru1I	TTAA	4 cut(s)	387, 447, 477, 687
Tru9I	TTAA	4 cut(s)	387, 447, 477, 687
TseFI	GTSAC	1 cut(s)	595
TseI	GCWGC	2 cut(s)	254, 257
Tsp45I	GTSAC	1 cut(s)	595
TspDTI	ATGAA	9 cut(s)	38, 75, 314, 342, 417, 423, 558, 793, 980
TspGWI	ACGGA	2 cut(s)	249, 852
Van91I	CCANNNNNTGG	1 cut(s)	850
XagI	CCTNNNNNAGG	2 cut(s)	378, 1037
XapI	RAATTY	3 cut(s)	499, 664, 754
XmiI	GTMKAC	1 cut(s)	642
XmnI	GAANNNNTTC	2 cut(s)	69, 321
XspI	CTAG	4 cut(s)	456, 725, 1026, 1078
Zsp2I	ATGCAT	1 cut(s)	408

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.