Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

SuperScaffold_49

Orthogroup ID

OG0019576

Physical Location & Seq

Genomic Coordinates Forward (+)

92121 .. 93543

Gene Structure 1423 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom49g00050.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1122 bp

ATGAAAAACCCAGAATCTAGGCTACCACCAGGATTTAGGTTTCACCCTACAGATGAAGAGCTCATCCTTCACTACCTTATAAAGAAGGTGGCCTCCTCTCCCTTACCTGTTTCCATCATCGCTGAAGTTGATATCTACAAGTTTGATCCATGGGAATTGCCAGCCAAAGCTGCGTTTGGTGAGAAAGAATGGTACTTCTTCAGTCCAAGAGATCGCAAGTATCCGAATGGTGCGAGGCCAAACAGGGCTGCCGCATCAGGGTATTGGAAGGCAACTGGAACAGATAAGACGATTGTGGCACCATCAGGAGGGCGGCAGAATGTTGGTGTGAAGAAAGCTCTTGTGTTCTACAAGGGGAGACCCCCCAAGGGAATCAAGACCAACTGGATCATGCATGAATACCGCCTTCCAGAAAGCCCAAATAACTACACCACCACCACCAACCACCACAGAGCCATGAAGCTCAATGATTTATCCATGAGGTTGGATGATTGGGTTCTTTGTCGAATCTACAAGAAGTCGAATGTTGTGACTTCAGCAGCGGCACTGCCAAATGATCAAGACCAAGACGTTCAAGGAGAAGAAGATTTCCTCCACGATATCCTTTTACCAAGCTTGAAAAGTCCCTTTCCCATCCTTGATCACAACATGATGAGTACTAGTACTACGAGCAGTCTCAAGCCTCAGAAATCTTGTTCTTTCTCCAACTTACTAGACGCCATGGACTACTCATTACTCACTAGTATTCTGGCGGATGGCCAGTACTATATCCCAACTGGAACTGGACTTCAATCAACTACTCCTAATAAGTTTAGTTATAGCTGTACCGGGAGTACTAGTACTGGATTAGACCCGCAACCGCTGTTCAATACCAATATCAGCAGCAACAGAAGTCATTTGTTTCAAACTCTCCCTCAGTACAACGGTTTGAACTTGCCATCATCAGCCCCAAGCACGGAAAACCGGCTAAAGCGCCAGCATTCCATCACAGATGATCGTGGCATGTTATTATATCCATCGAAGAAAGACGTAAATTCCAATTGCAGTTTCACTAACACCGCCAATTCATTCTTGAATCAGCAATTACTTCTGAGTAATCCTCGTTTTCATTTTCAAGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007568 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009825 GO:0009835 GO:0009889 GO:0009908 GO:0009987 GO:0010150 GO:0010154 GO:0010468 GO:0010556 GO:0016049 GO:0019219 GO:0019222 GO:0021700 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048366 GO:0048367 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0071695 GO:0080090 GO:0090567 GO:0090693 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

374

Amino Acids

41.99

Weight (kDa)

9.05

Isoelectric Point (pI)

42.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019576)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04070 AT3G04070
malus_domestica	MD12G1000800.v1.1 MD14G1001000.v1.1
prunus_persica	Prupe.7G001200_v2.0.a1
pyrus_communis	pycom12g00080 pycom49g00050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	80
AccB1I	GGYRCC	1 cut(s)	298
AciI	CCGC	8 cut(s)	252, 313, 403, 542, 752, 854, 860, 1059
AclWI	GGATC	2 cut(s)	140, 395
AcoI	YGGCCR	1 cut(s)	757
AcsI	RAATTY	1 cut(s)	1033
AcuI	CTGAAG	3 cut(s)	144, 184, 519
AcyI	GRCGYC	1 cut(s)	717
AfaI	GTAC	8 cut(s)	194, 658, 664, 764, 826, 835, 841, 920
AfiI	CCNNNNNNNGG	4 cut(s)	258, 308, 368, 955
AgsI	TTSAA	8 cut(s)	575, 619, 791, 868, 905, 931, 1075, 1115
AhlI	ACTAGT	3 cut(s)	659, 740, 836
AjnI	CCWGG	1 cut(s)	28
AjuI	GAANNNNNNNTTGG	2 cut(s)	1031, 1063
AluBI	AGCT	6 cut(s)	61, 170, 338, 463, 615, 822
AluI	AGCT	6 cut(s)	61, 170, 338, 463, 615, 822
Alw21I	GWGCWC	1 cut(s)	63
Alw26I	GTCTC	2 cut(s)	352, 680
AlwI	GGATC	2 cut(s)	140, 395
AoxI	GGCC	3 cut(s)	90, 236, 757
ApeKI	GCWGC	4 cut(s)	170, 248, 539, 882
ApoI	RAATTY	1 cut(s)	1033
AspLEI	GCGC	1 cut(s)	975
AsuC2I	CCSGG	1 cut(s)	829
AsuHPI	GGTGA	2 cut(s)	35, 191
BalI	TGGCCA	1 cut(s)	759
BanI	GGYRCC	1 cut(s)	298
BanII	GRGCYC	1 cut(s)	63
Bbv12I	GWGCWC	1 cut(s)	63
BbvI	GCAGC	4 cut(s)	157, 235, 551, 894
BccI	CCATC	7 cut(s)	122, 310, 641, 749, 946, 992, 1024
BciT130I	CCWGG	1 cut(s)	30
BciVI	GTATCC	1 cut(s)	231
BclI	TGATCA	2 cut(s)	556, 640
BcnI	CCSGG	1 cut(s)	829
BcoDI	GTCTC	2 cut(s)	352, 680
BcuI	ACTAGT	3 cut(s)	659, 740, 836
BfaI	CTAG	5 cut(s)	18, 660, 713, 741, 837
BfmI	CTRYAG	1 cut(s)	48
BfoI	RGCGCY	1 cut(s)	976
BfuI	GTATCC	1 cut(s)	231
BisI	GCNGC	7 cut(s)	171, 249, 252, 314, 540, 543, 883
BlsI	GCNGC	7 cut(s)	172, 250, 253, 315, 541, 544, 884
BmcAI	AGTACT	5 cut(s)	658, 664, 764, 835, 841
Bme1390I	CCNGG	2 cut(s)	30, 829
BmiI	GGNNCC	1 cut(s)	300
BmrFI	CCNGG	2 cut(s)	30, 829
BmsI	GCATC	1 cut(s)	263
BplI	GAGNNNNNCTC	2 cut(s)	1084, 1116
BpuEI	CTTGAG	1 cut(s)	662
BpuMI	CCSGG	1 cut(s)	829
BsaHI	GRCGYC	1 cut(s)	717
BsaI	GGTCTC	1 cut(s)	352
BsaJI	CCNNGG	3 cut(s)	149, 366, 720
BsaXI	ACNNNNNCTCC	2 cut(s)	823, 853
Bsc4I	CCNNNNNNNGG	4 cut(s)	258, 308, 368, 955
Bse118I	RCCGGY	1 cut(s)	963
Bse1I	ACTGG	6 cut(s)	280, 389, 760, 781, 787, 847
BseBI	CCWGG	1 cut(s)	30
BseDI	CCNNGG	3 cut(s)	149, 366, 720
BseGI	GGATG	4 cut(s)	63, 493, 633, 760
BseLI	CCNNNNNNNGG	4 cut(s)	258, 308, 368, 955
BseMII	CTCAG	3 cut(s)	698, 929, 1082
BseNI	ACTGG	6 cut(s)	280, 389, 760, 781, 787, 847
BseRI	GAGGAG	1 cut(s)	85
BseXI	GCAGC	4 cut(s)	157, 235, 551, 894
BshFI	GGCC	3 cut(s)	92, 238, 759
BshNI	GGYRCC	1 cut(s)	298
BsiHKAI	GWGCWC	1 cut(s)	63
BsiSI	CCGG	2 cut(s)	828, 964
BslFI	GGGAC	1 cut(s)	609
BslI	CCNNNNNNNGG	4 cut(s)	258, 308, 368, 955
BsmAI	GTCTC	2 cut(s)	352, 680
BsmFI	GGGAC	1 cut(s)	609
BsmI	GAATGC	1 cut(s)	979
BsnI	GGCC	3 cut(s)	92, 238, 759
Bso31I	GGTCTC	1 cut(s)	352
Bsp1286I	GDGCHC	1 cut(s)	63
Bsp143I	GATC	6 cut(s)	145, 211, 387, 556, 640, 994
Bsp19I	CCATGG	2 cut(s)	149, 720
BspACI	CCGC	8 cut(s)	252, 313, 403, 542, 752, 854, 860, 1059
BspANI	GGCC	3 cut(s)	92, 238, 759
BspCNI	CTCAG	3 cut(s)	697, 928, 1083
BspLI	GGNNCC	1 cut(s)	300
BspPI	GGATC	2 cut(s)	140, 395
BspQI	GCTCTTC	1 cut(s)	51
BspT107I	GGYRCC	1 cut(s)	298
BspTNI	GGTCTC	1 cut(s)	352
BsrFI	RCCGGY	1 cut(s)	963
BsrI	ACTGG	6 cut(s)	280, 389, 760, 781, 787, 847
BssAI	RCCGGY	1 cut(s)	963
BssECI	CCNNGG	3 cut(s)	149, 366, 720
BssMI	GATC	6 cut(s)	145, 211, 387, 556, 640, 994
BssNI	GRCGYC	1 cut(s)	717
BssT1I	CCWWGG	3 cut(s)	149, 366, 720
Bst2UI	CCWGG	1 cut(s)	30
Bst4CI	ACNGT	1 cut(s)	926
Bst6I	CTCTTC	1 cut(s)	51
BstACI	GRCGYC	1 cut(s)	717
BstC8I	GCNNGC	2 cut(s)	162, 977
BstDEI	CTNAG	3 cut(s)	684, 915, 1091
BstDSI	CCRYGG	2 cut(s)	149, 720
BstF5I	GGATG	4 cut(s)	63, 493, 633, 760
BstH2I	RGCGCY	1 cut(s)	976
BstHHI	GCGC	1 cut(s)	975
BstKTI	GATC	6 cut(s)	148, 214, 390, 559, 643, 997
BstMAI	GTCTC	2 cut(s)	352, 680
BstMBI	GATC	6 cut(s)	145, 211, 387, 556, 640, 994
BstMWI	GCNNNNNNNGC	1 cut(s)	170
BstNI	CCWGG	1 cut(s)	30
BstNSI	RCATGY	1 cut(s)	1006
BstSCI	CCNGG	2 cut(s)	28, 827
BstSFI	CTRYAG	1 cut(s)	48
BstV1I	GCAGC	4 cut(s)	157, 235, 551, 894
BstXI	CCANNNNNNTGG	1 cut(s)	484
BsuI	GTATCC	1 cut(s)	231
BsuRI	GGCC	3 cut(s)	92, 238, 759
BtgI	CCRYGG	2 cut(s)	149, 720
BtgZI	GCGATG	1 cut(s)	103
BtsCI	GGATG	4 cut(s)	63, 493, 633, 760
BtsI	GCAGTG	1 cut(s)	545
BtsIMutI	CAGTG	1 cut(s)	545
Cac8I	GCNNGC	2 cut(s)	162, 977
CfoI	GCGC	1 cut(s)	975
Cfr10I	RCCGGY	1 cut(s)	963
CseI	GACGC	1 cut(s)	725
Csp6I	GTAC	8 cut(s)	193, 657, 663, 763, 825, 834, 840, 919
CviAII	CATG	8 cut(s)	150, 391, 395, 457, 478, 649, 721, 1003
CviQI	GTAC	8 cut(s)	193, 657, 663, 763, 825, 834, 840, 919
DdeI	CTNAG	3 cut(s)	684, 915, 1091
DpnI	GATC	6 cut(s)	147, 213, 389, 558, 642, 996
DpnII	GATC	6 cut(s)	145, 211, 387, 556, 640, 994
EaeI	YGGCCR	1 cut(s)	757
Eam1104I	CTCTTC	1 cut(s)	51
EarI	CTCTTC	1 cut(s)	51
EciI	GGCGGA	1 cut(s)	767
Ecl136II	GAGCTC	1 cut(s)	61
Eco130I	CCWWGG	3 cut(s)	149, 366, 720
Eco24I	GRGCYC	1 cut(s)	63
Eco31I	GGTCTC	1 cut(s)	352
Eco32I	GATATC	2 cut(s)	133, 601
Eco53kI	GAGCTC	1 cut(s)	61
Eco57I	CTGAAG	3 cut(s)	144, 184, 519
EcoICRI	GAGCTC	1 cut(s)	61
EcoRII	CCWGG	1 cut(s)	28
EcoRV	GATATC	2 cut(s)	133, 601
EcoT14I	CCWWGG	3 cut(s)	149, 366, 720
EcoT22I	ATGCAT	1 cut(s)	396
EcoT38I	GRGCYC	1 cut(s)	63
ErhI	CCWWGG	3 cut(s)	149, 366, 720
FaeI	CATG	8 cut(s)	153, 394, 398, 460, 481, 652, 724, 1006
FaqI	GGGAC	1 cut(s)	609
FatI	CATG	8 cut(s)	149, 390, 394, 456, 477, 648, 720, 1002
FauI	CCCGC	1 cut(s)	861
FbaI	TGATCA	2 cut(s)	556, 640
Fnu4HI	GCNGC	7 cut(s)	171, 249, 252, 314, 540, 543, 883
FokI	GGATG	4 cut(s)	50, 500, 620, 767
FriOI	GRGCYC	1 cut(s)	63
Fsp4HI	GCNGC	7 cut(s)	171, 249, 252, 314, 540, 543, 883
FspBI	CTAG	5 cut(s)	18, 660, 713, 741, 837
GlaI	GCGC	1 cut(s)	974
GluI	GCNGC	7 cut(s)	171, 249, 252, 314, 540, 543, 883
HaeII	RGCGCY	1 cut(s)	976
HaeIII	GGCC	3 cut(s)	92, 238, 759
HapII	CCGG	2 cut(s)	828, 964
HgaI	GACGC	1 cut(s)	725
HhaI	GCGC	1 cut(s)	975
Hin1I	GRCGYC	1 cut(s)	717
Hin1II	CATG	8 cut(s)	153, 394, 398, 460, 481, 652, 724, 1006
Hin6I	GCGC	1 cut(s)	973
HinP1I	GCGC	1 cut(s)	973
HindIII	AAGCTT	1 cut(s)	613
HinfI	GANTC	4 cut(s)	14, 372, 507, 1075
HpaII	CCGG	2 cut(s)	828, 964
HphI	GGTGA	2 cut(s)	35, 191
Hpy188I	TCNGA	3 cut(s)	225, 687, 1092
Hpy188III	TCNNGA	6 cut(s)	306, 376, 410, 560, 1072, 1115
HpyAV	CCTTC	4 cut(s)	77, 79, 262, 416
HpyCH4III	ACNGT	1 cut(s)	926
HpyCH4IV	ACGT	2 cut(s)	570, 1029
HpyCH4V	TGCA	2 cut(s)	394, 1044
HpyF10VI	GCNNNNNNNGC	1 cut(s)	170
HpyF3I	CTNAG	3 cut(s)	684, 915, 1091
HpySE526I	ACGT	2 cut(s)	570, 1029
Hsp92I	GRCGYC	1 cut(s)	717
Hsp92II	CATG	8 cut(s)	153, 394, 398, 460, 481, 652, 724, 1006
HspAI	GCGC	1 cut(s)	973
Ksp22I	TGATCA	2 cut(s)	556, 640
Kzo9I	GATC	6 cut(s)	145, 211, 387, 556, 640, 994
LguI	GCTCTTC	1 cut(s)	51
Lsp1109I	GCAGC	4 cut(s)	157, 235, 551, 894
LweI	GCATC	1 cut(s)	263
MaeI	CTAG	5 cut(s)	18, 660, 713, 741, 837
MaeII	ACGT	2 cut(s)	570, 1029
MaeIII	GTNAC	1 cut(s)	529
MalI	GATC	6 cut(s)	147, 213, 389, 558, 642, 996
MboI	GATC	6 cut(s)	145, 211, 387, 556, 640, 994
MboII	GAAGA	6 cut(s)	68, 190, 343, 593, 596, 1033
MfeI	CAATTG	1 cut(s)	1039
MhlI	GDGCHC	1 cut(s)	63
MlsI	TGGCCA	1 cut(s)	759
MluCI	AATT	5 cut(s)	155, 1033, 1039, 1063, 1082
MluNI	TGGCCA	1 cut(s)	759
MmeI	TCCRAC	2 cut(s)	465, 729
MnlI	CCTC	9 cut(s)	103, 106, 228, 302, 474, 602, 693, 924, 1110
Mox20I	TGGCCA	1 cut(s)	759
Mph1103I	ATGCAT	1 cut(s)	396
MscI	TGGCCA	1 cut(s)	759
Msp20I	TGGCCA	1 cut(s)	759
MspA1I	CMGCKG	2 cut(s)	542, 862
MspI	CCGG	2 cut(s)	828, 964
MspR9I	CCNGG	2 cut(s)	30, 829
MunI	CAATTG	1 cut(s)	1039
Mva1269I	GAATGC	1 cut(s)	979
MvaI	CCWGG	1 cut(s)	30
MwoI	GCNNNNNNNGC	1 cut(s)	170
NciI	CCSGG	1 cut(s)	829
NcoI	CCATGG	2 cut(s)	149, 720
NdeII	GATC	6 cut(s)	145, 211, 387, 556, 640, 994
NlaIII	CATG	8 cut(s)	153, 394, 398, 460, 481, 652, 724, 1006
NlaIV	GGNNCC	1 cut(s)	300
NmuCI	GTSAC	1 cut(s)	529
NsiI	ATGCAT	1 cut(s)	396
NspI	RCATGY	1 cut(s)	1006
PciSI	GCTCTTC	1 cut(s)	51
PctI	GAATGC	1 cut(s)	979
PfeI	GAWTC	4 cut(s)	14, 372, 507, 1075
PkrI	GCNGC	7 cut(s)	172, 250, 253, 315, 541, 544, 884
PsiI	TTATAA	1 cut(s)	80
Psp124BI	GAGCTC	1 cut(s)	63
Psp6I	CCWGG	1 cut(s)	28
PspGI	CCWGG	1 cut(s)	28
PspN4I	GGNNCC	1 cut(s)	300
RsaI	GTAC	8 cut(s)	194, 658, 664, 764, 826, 835, 841, 920
RsaNI	GTAC	8 cut(s)	193, 657, 663, 763, 825, 834, 840, 919
SacI	GAGCTC	1 cut(s)	63
SapI	GCTCTTC	1 cut(s)	51
SatI	GCNGC	7 cut(s)	171, 249, 252, 314, 540, 543, 883
Sau3AI	GATC	6 cut(s)	145, 211, 387, 556, 640, 994
ScaI	AGTACT	5 cut(s)	658, 664, 764, 835, 841
ScrFI	CCNGG	2 cut(s)	30, 829
SduI	GDGCHC	1 cut(s)	63
SfaNI	GCATC	1 cut(s)	263
SfcI	CTRYAG	1 cut(s)	48
SmlI	CTYRAG	1 cut(s)	677
SmoI	CTYRAG	1 cut(s)	677
SpeI	ACTAGT	3 cut(s)	659, 740, 836
Sse9I	AATT	5 cut(s)	155, 1033, 1039, 1063, 1082
SsiI	CCGC	8 cut(s)	252, 313, 403, 542, 752, 854, 860, 1059
SspMI	CTAG	5 cut(s)	18, 660, 713, 741, 837
SstI	GAGCTC	1 cut(s)	63
StyD4I	CCNGG	2 cut(s)	28, 827
StyI	CCWWGG	3 cut(s)	149, 366, 720
TaaI	ACNGT	1 cut(s)	926
TaiI	ACGT	2 cut(s)	573, 1032
TaqI	TCGA	3 cut(s)	505, 521, 1019
TasI	AATT	5 cut(s)	155, 1033, 1039, 1063, 1082
TatI	WGTACW	6 cut(s)	656, 662, 762, 833, 839, 918
TauI	GCSGC	3 cut(s)	254, 316, 545
TfiI	GAWTC	4 cut(s)	14, 372, 507, 1075
TscAI	CASTG	1 cut(s)	552
TseFI	GTSAC	1 cut(s)	529
TseI	GCWGC	4 cut(s)	170, 248, 539, 882
Tsp45I	GTSAC	1 cut(s)	529
TspDTI	ATGAA	6 cut(s)	17, 69, 411, 473, 1056, 1097
TspGWI	ACGGA	1 cut(s)	971
TspRI	CASTG	1 cut(s)	552
XapI	RAATTY	1 cut(s)	1033
XceI	RCATGY	1 cut(s)	1006
XspI	CTAG	5 cut(s)	18, 660, 713, 741, 837
ZrmI	AGTACT	5 cut(s)	658, 664, 764, 835, 841
Zsp2I	ATGCAT	1 cut(s)	396

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.