Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0019576

Physical Location & Seq

Genomic Coordinates Forward (+)

128094 .. 128956

Gene Structure 863 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g00080.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGCATGAGTATCGCCTTCCAGAAAACCCAAATAACCACACCACCACCAACCACCACCACAGAGTCATGAAGCTCAAAGATTTATCCATGAGGTTGGATGATTGGGTTCTTTGTCGAATCTACAAGAAGTCGAATGTTGGGACTTCAGCAGTGGCACTGCCAAGTGATCAAAACCAAGAAGTTCAAGAAGAAGAAGATTTCCTCCACGATATCCTTTCCCCAAGCTTGAAAAGTCCCTTTACCGGCCTTGATCACAACATGATGAGTACCAGTAATACTAGCAGTCTCAAGCCTCAGAAATCTTGTTCCTTCTCCAACTTACTAGACGCCATGGACTACTCATTACTCACCAGTATCCTGGCGGATGGCCAATACTCTATCCCAACTGGAACTGGATTTCAATCAACGACTCCTAATAAGTTTAGCTATAGCTGTACCGGGAGTAGTAGTATCGGTTTAGACCCGCAACTGCTGTTCAATACCGATATTAGCAGCAGCAGTCATTTGCTTCAAACTCTCCCTCAATACAACGGTTTGAACTTGCCATCATCAGCTTCAAGCACCGAAAACCGGCTCAAGCGCCAGCATTCCATCACAGATGATCGTGGCGTGTTATTATGTCCATCGAAGAAATACGTAAATTCCAACTGCAGTTTCACCAACACCGCCAATTCATTCTTGAATCAGCAATTACTTCTGAGTAGTCCTAGTTTTCATTTTCAAGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007568 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009825 GO:0009835 GO:0009889 GO:0009908 GO:0009987 GO:0010150 GO:0010154 GO:0010468 GO:0010556 GO:0016049 GO:0019219 GO:0019222 GO:0021700 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048366 GO:0048367 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0071695 GO:0080090 GO:0090567 GO:0090693 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

243

Amino Acids

26.99

Weight (kDa)

6.18

Isoelectric Point (pI)

46.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019576)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04070 AT3G04070
malus_domestica	MD12G1000800.v1.1 MD14G1001000.v1.1
prunus_persica	Prupe.7G001200_v2.0.a1
pyrus_communis	pycom12g00080 pycom49g00050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	362, 464, 666
AcoI	YGGCCR	1 cut(s)	367
AcsI	RAATTY	1 cut(s)	640
AcuI	CTGAAG	1 cut(s)	129
AcyI	GRCGYC	1 cut(s)	327
AfaI	GTAC	2 cut(s)	268, 436
AfiI	CCNNNNNNNGG	2 cut(s)	242, 570
AgsI	TTSAA	9 cut(s)	185, 229, 401, 478, 512, 538, 558, 682, 722
AjnI	CCWGG	1 cut(s)	357
AjuI	GAANNNNNNNTTGG	2 cut(s)	638, 670
AluBI	AGCT	5 cut(s)	73, 225, 426, 432, 554
AluI	AGCT	5 cut(s)	73, 225, 426, 432, 554
Alw26I	GTCTC	1 cut(s)	290
AoxI	GGCC	2 cut(s)	244, 367
ApeKI	GCWGC	2 cut(s)	492, 495
ApoI	RAATTY	1 cut(s)	640
AspLEI	GCGC	1 cut(s)	582
AsuC2I	CCSGG	1 cut(s)	439
AsuHPI	GGTGA	2 cut(s)	340, 649
BalI	TGGCCA	1 cut(s)	369
BbvI	GCAGC	2 cut(s)	504, 507
BccI	CCATC	4 cut(s)	359, 553, 599, 631
BcgI	CGANNNNNNTGC	1 cut(s)	27
BciT130I	CCWGG	1 cut(s)	359
BciVI	GTATCC	1 cut(s)	365
BclI	TGATCA	2 cut(s)	166, 250
BcnI	CCSGG	1 cut(s)	439
BcoDI	GTCTC	1 cut(s)	290
BfaI	CTAG	3 cut(s)	279, 323, 708
BfmI	CTRYAG	2 cut(s)	427, 649
BfoI	RGCGCY	1 cut(s)	583
BfuI	GTATCC	1 cut(s)	365
BisI	GCNGC	2 cut(s)	493, 496
BlsI	GCNGC	2 cut(s)	494, 497
Bme1390I	CCNGG	2 cut(s)	359, 439
BmrFI	CCNGG	2 cut(s)	359, 439
BpuEI	CTTGAG	2 cut(s)	272, 560
BpuMI	CCSGG	1 cut(s)	439
BsaAI	YACGTR	1 cut(s)	637
BsaBI	GATNNNNATC	1 cut(s)	400
BsaHI	GRCGYC	1 cut(s)	327
BsaJI	CCNNGG	1 cut(s)	330
BsaXI	ACNNNNNCTCC	2 cut(s)	433, 463
Bsc4I	CCNNNNNNNGG	2 cut(s)	242, 570
Bse118I	RCCGGY	2 cut(s)	242, 570
Bse1I	ACTGG	4 cut(s)	270, 351, 391, 397
Bse8I	GATNNNNATC	1 cut(s)	400
BseBI	CCWGG	1 cut(s)	359
BseDI	CCNNGG	1 cut(s)	330
BseGI	GGATG	2 cut(s)	103, 370
BseJI	GATNNNNATC	1 cut(s)	400
BseLI	CCNNNNNNNGG	2 cut(s)	242, 570
BseMII	CTCAG	2 cut(s)	308, 689
BseNI	ACTGG	4 cut(s)	270, 351, 391, 397
BseXI	GCAGC	2 cut(s)	504, 507
BshFI	GGCC	2 cut(s)	246, 369
BsiSI	CCGG	3 cut(s)	243, 438, 571
BslFI	GGGAC	2 cut(s)	154, 219
BslI	CCNNNNNNNGG	2 cut(s)	242, 570
BsmAI	GTCTC	1 cut(s)	290
BsmFI	GGGAC	2 cut(s)	154, 219
BsmI	GAATGC	1 cut(s)	586
BsnI	GGCC	2 cut(s)	246, 369
Bsp143I	GATC	3 cut(s)	166, 250, 601
Bsp19I	CCATGG	1 cut(s)	330
BspACI	CCGC	3 cut(s)	362, 464, 666
BspANI	GGCC	2 cut(s)	246, 369
BspCNI	CTCAG	2 cut(s)	307, 690
BspHI	TCATGA	1 cut(s)	66
BspMAI	CTGCAG	1 cut(s)	653
BsrFI	RCCGGY	2 cut(s)	242, 570
BsrI	ACTGG	4 cut(s)	270, 351, 391, 397
BssAI	RCCGGY	2 cut(s)	242, 570
BssECI	CCNNGG	1 cut(s)	330
BssMI	GATC	3 cut(s)	166, 250, 601
BssNI	GRCGYC	1 cut(s)	327
BssT1I	CCWWGG	1 cut(s)	330
Bst2UI	CCWGG	1 cut(s)	359
Bst4CI	ACNGT	1 cut(s)	533
BstACI	GRCGYC	1 cut(s)	327
BstBAI	YACGTR	1 cut(s)	637
BstC8I	GCNNGC	1 cut(s)	584
BstDEI	CTNAG	2 cut(s)	294, 698
BstDSI	CCRYGG	1 cut(s)	330
BstF5I	GGATG	2 cut(s)	103, 370
BstH2I	RGCGCY	1 cut(s)	583
BstHHI	GCGC	1 cut(s)	582
BstKTI	GATC	3 cut(s)	169, 253, 604
BstMAI	GTCTC	1 cut(s)	290
BstMBI	GATC	3 cut(s)	166, 250, 601
BstNI	CCWGG	1 cut(s)	359
BstSCI	CCNGG	2 cut(s)	357, 437
BstSFI	CTRYAG	2 cut(s)	427, 649
BstSNI	TACGTA	1 cut(s)	637
BstV1I	GCAGC	2 cut(s)	504, 507
BstXI	CCANNNNNNTGG	2 cut(s)	94, 358
BsuI	GTATCC	1 cut(s)	365
BsuRI	GGCC	2 cut(s)	246, 369
BtgI	CCRYGG	1 cut(s)	330
BtsCI	GGATG	2 cut(s)	103, 370
BtsI	GCAGTG	2 cut(s)	155, 156
BtsIMutI	CAGTG	2 cut(s)	155, 156
Cac8I	GCNNGC	1 cut(s)	584
CciI	TCATGA	1 cut(s)	66
CfoI	GCGC	1 cut(s)	582
Cfr10I	RCCGGY	2 cut(s)	242, 570
CseI	GACGC	1 cut(s)	335
Csp6I	GTAC	2 cut(s)	267, 435
CviAII	CATG	5 cut(s)	5, 67, 88, 259, 331
CviJI	RGCY	9 cut(s)	73, 225, 246, 292, 369, 426, 432, 554, 574
CviKI_1	RGCY	9 cut(s)	73, 225, 246, 292, 369, 426, 432, 554, 574
CviQI	GTAC	2 cut(s)	267, 435
DdeI	CTNAG	2 cut(s)	294, 698
DpnI	GATC	3 cut(s)	168, 252, 603
DpnII	GATC	3 cut(s)	166, 250, 601
EaeI	YGGCCR	1 cut(s)	367
EciI	GGCGGA	1 cut(s)	377
Eco105I	TACGTA	1 cut(s)	637
Eco130I	CCWWGG	1 cut(s)	330
Eco32I	GATATC	1 cut(s)	211
Eco57I	CTGAAG	1 cut(s)	129
EcoRII	CCWGG	1 cut(s)	357
EcoRV	GATATC	1 cut(s)	211
EcoT14I	CCWWGG	1 cut(s)	330
EcoT22I	ATGCAT	1 cut(s)	6
ErhI	CCWWGG	1 cut(s)	330
FaeI	CATG	5 cut(s)	8, 70, 91, 262, 334
FaiI	YATR	7 cut(s)	6, 68, 89, 260, 332, 429, 619
FaqI	GGGAC	2 cut(s)	154, 219
FatI	CATG	5 cut(s)	4, 66, 87, 258, 330
FauI	CCCGC	1 cut(s)	471
FbaI	TGATCA	2 cut(s)	166, 250
Fnu4HI	GCNGC	2 cut(s)	493, 496
FokI	GGATG	2 cut(s)	110, 377
Fsp4HI	GCNGC	2 cut(s)	493, 496
FspBI	CTAG	3 cut(s)	279, 323, 708
GlaI	GCGC	1 cut(s)	581
GluI	GCNGC	2 cut(s)	493, 496
HaeII	RGCGCY	1 cut(s)	583
HaeIII	GGCC	2 cut(s)	246, 369
HapII	CCGG	3 cut(s)	243, 438, 571
HgaI	GACGC	1 cut(s)	335
HhaI	GCGC	1 cut(s)	582
Hin1I	GRCGYC	1 cut(s)	327
Hin1II	CATG	5 cut(s)	8, 70, 91, 262, 334
Hin6I	GCGC	1 cut(s)	580
HinP1I	GCGC	1 cut(s)	580
HindIII	AAGCTT	1 cut(s)	223
HinfI	GANTC	4 cut(s)	63, 117, 409, 682
HpaII	CCGG	3 cut(s)	243, 438, 571
HphI	GGTGA	2 cut(s)	340, 649
Hpy188I	TCNGA	2 cut(s)	297, 699
Hpy188III	TCNNGA	5 cut(s)	20, 67, 185, 679, 722
HpyAV	CCTTC	2 cut(s)	26, 319
HpyCH4III	ACNGT	1 cut(s)	533
HpyCH4IV	ACGT	1 cut(s)	636
HpyCH4V	TGCA	2 cut(s)	4, 651
HpyF3I	CTNAG	2 cut(s)	294, 698
HpySE526I	ACGT	1 cut(s)	636
Hsp92I	GRCGYC	1 cut(s)	327
Hsp92II	CATG	5 cut(s)	8, 70, 91, 262, 334
HspAI	GCGC	1 cut(s)	580
Ksp22I	TGATCA	2 cut(s)	166, 250
Kzo9I	GATC	3 cut(s)	166, 250, 601
Lsp1109I	GCAGC	2 cut(s)	504, 507
MaeI	CTAG	3 cut(s)	279, 323, 708
MaeII	ACGT	1 cut(s)	636
MalI	GATC	3 cut(s)	168, 252, 603
MboI	GATC	3 cut(s)	166, 250, 601
MboII	GAAGA	4 cut(s)	200, 203, 206, 640
MlsI	TGGCCA	1 cut(s)	369
MluCI	AATT	3 cut(s)	640, 670, 689
MluNI	TGGCCA	1 cut(s)	369
MlyI	GAGTC	2 cut(s)	72, 403
MmeI	TCCRAC	3 cut(s)	75, 339, 669
MnlI	CCTC	4 cut(s)	84, 212, 303, 531
Mox20I	TGGCCA	1 cut(s)	369
Mph1103I	ATGCAT	1 cut(s)	6
MscI	TGGCCA	1 cut(s)	369
Msp20I	TGGCCA	1 cut(s)	369
MspI	CCGG	3 cut(s)	243, 438, 571
MspR9I	CCNGG	2 cut(s)	359, 439
Mva1269I	GAATGC	1 cut(s)	586
MvaI	CCWGG	1 cut(s)	359
NciI	CCSGG	1 cut(s)	439
NcoI	CCATGG	1 cut(s)	330
NdeII	GATC	3 cut(s)	166, 250, 601
NlaIII	CATG	5 cut(s)	8, 70, 91, 262, 334
NsiI	ATGCAT	1 cut(s)	6
PagI	TCATGA	1 cut(s)	66
PctI	GAATGC	1 cut(s)	586
PfeI	GAWTC	2 cut(s)	117, 682
PkrI	GCNGC	2 cut(s)	494, 497
PleI	GAGTC	2 cut(s)	71, 403
PpsI	GAGTC	2 cut(s)	71, 403
Ppu21I	YACGTR	1 cut(s)	637
Psp6I	CCWGG	1 cut(s)	357
PspGI	CCWGG	1 cut(s)	357
PstI	CTGCAG	1 cut(s)	653
RsaI	GTAC	2 cut(s)	268, 436
RsaNI	GTAC	2 cut(s)	267, 435
SatI	GCNGC	2 cut(s)	493, 496
Sau3AI	GATC	3 cut(s)	166, 250, 601
SchI	GAGTC	2 cut(s)	72, 403
ScrFI	CCNGG	2 cut(s)	359, 439
SetI	ASST	7 cut(s)	75, 95, 227, 428, 434, 556, 639
SfcI	CTRYAG	2 cut(s)	427, 649
SmlI	CTYRAG	2 cut(s)	287, 575
SmoI	CTYRAG	2 cut(s)	287, 575
SnaBI	TACGTA	1 cut(s)	637
Sse9I	AATT	3 cut(s)	640, 670, 689
SsiI	CCGC	3 cut(s)	362, 464, 666
SspMI	CTAG	3 cut(s)	279, 323, 708
StyD4I	CCNGG	2 cut(s)	357, 437
StyI	CCWWGG	1 cut(s)	330
TaaI	ACNGT	1 cut(s)	533
TaiI	ACGT	1 cut(s)	639
TaqI	TCGA	3 cut(s)	115, 131, 626
TasI	AATT	3 cut(s)	640, 670, 689
TfiI	GAWTC	2 cut(s)	117, 682
TscAI	CASTG	2 cut(s)	156, 162
TseI	GCWGC	2 cut(s)	492, 495
TspDTI	ATGAA	3 cut(s)	83, 663, 704
TspRI	CASTG	2 cut(s)	156, 162
XapI	RAATTY	1 cut(s)	640
XspI	CTAG	3 cut(s)	279, 323, 708
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.