Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0016024

Physical Location & Seq

Genomic Coordinates Reverse (-)

1956409 .. 1958304

Gene Structure 1896 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G06430.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1461 bp

ATGGCGTCAATGTCTCTCTCCTTTTCTTCTTCGCTATGTTCATCCAGAATCCCCGAAGGTAAGCGTAGGTTTCGTCACAGAGATGTGGGCATCGTTAGATGCGTTTTGGCTGCTTCGAAATCTTCTCCGGGAAGTGTTACGAAGAAGAGGCTTTGGAAAGACGGCGAATTCCCCGGAATCACGGAGCCGGTTAATCAGAGAAGAACTCCGATAAAGAATGTGAAGAAGAAACTTGACAGGAGAAGCAAAGCTAACGGATGGGTTAACACCGTCACTGAAACTTTGTCCGATCTCATCGCCAAAAAGCAGTGGTTACAAGCTCTCGAGGTTTTTGATATGTTGAGGGAACAAACATTTTATCAACCAAAGGAAGGAACTTACATGAAGCTGCTTGTTCTTCTCGGTAAATCTGGTCAACCCAATCGTGCACAGAAGCTGTTCGACGAAATGCTTGAAGAAGGACTTGAACCAACTGTTGAACTCTACACTGCTCTTCTCGCTGCTTACACTCGCAGCAATCTCATCGACGATGCTTTTTCAATTCTTGATAAAATGAAAAGCTTTCCTCAATGCCAACCTGATGTTTTCACGTACAGCACTCTGCTCAAGGCTTGTGTGGATGCTTCTCAGTTTGACTTGGTGGATTCGTTATACAAGGAAATGGACGAGCGTTTGATAACTCCAAACACTGTGACCCAGAACATAGTTTTAAGTGGGTACGGTAGGGTCGGAAGGTTTGATCAGATGGAGAAAGTTTTGTCTGATATGTTGGTGAGTACTGCTTGCAAACCCGATGTGTGGACTATGAATATCATCCTTAGTGTGTTTGGAAACATGGGTAAGATAGACATGATGGAGAGCTGGTACGAAAAGTTCAGGAACTTTGGGATTGAGCCAGAGACTCGGACTTTCAATATTTTGATTGGTTCTTATGGGAAGAAGAGAATGTATGATAAGATGTCGTCTGTCATGGAATACATGCGAAAGCTAGAGTTTCCGTGGACAACATCAACCTACAACAATATCATCGAGGCGTTTGCGGATGTTGGTGATGCAAAGAACATGGAGTTGACATTTGATCAGATGCGTAGCGAAGGTATGAAAGCAGACACAAAGACCTTTTGCTGTCTCATAAACGGATATGCCAATGCCGGTCTTTTCCACAAGGTGATAAGTAGTGTTCAGTTGGCTGCTAAGTTTGAGATACCCGAGAATACTGCCTTTTACAACGCGGTGATATCAGCGTGTGCTAAAGCAGATGATCTGATAGAGATGGAAAGAGTGTACATAAGAATGAAGGAGAGACAATGCGTATGCGATTCAAGAACGTTTGAGATCATGGTCGAGGCGTATGAAAAAGAAGGTATGAATGATAAGATCTATTACTTGGAACAAGAGAGGCAAAAGCTTATGGATCGCACTGTTGCTACAAAAGAGATGGAGAATCTTCCGGCAGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009553 GO:0009555 GO:0009790 GO:0009791 GO:0009793 GO:0009856 GO:0009987 GO:0010154 GO:0016070 GO:0016787 GO:0016788 GO:0019843 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0044706 GO:0046483 GO:0048229 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0048868 GO:0051704 GO:0061458 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

486

Amino Acids

55.7

Weight (kDa)

7.89

Isoelectric Point (pI)

46.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_long	PF17177	105 - 234	4.9e-09	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	145 - 207	2.8e-10	Pentatricopeptide repeat domain
PPR_2	PF13041	157 - 206	2.9e-11	PPR repeat family
PPR_3	PF13812	181 - 241	1.4e-06	Pentatricopeptide repeat domain
PPR_2	PF13041	193 - 241	3.3e-10	PPR repeat family
PPR_2	PF13041	228 - 276	1e-08	PPR repeat family
PPR_2	PF13041	264 - 311	3.7e-07	PPR repeat family
PPR_2	PF13041	299 - 347	2.4e-06	PPR repeat family
TPR_24	PF23276	321 - 429	4.9e-08	Fungal tetratrico peptide repeats
PPR_2	PF13041	336 - 383	1.8e-08	PPR repeat family
PPR_2	PF13041	405 - 451	7.3e-08	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016024)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06430
fragaria_vesca	FvH4_4g21400
malus_domestica	MD13G1141500.v1.1 MD16G1137800.v1.1
prunus_persica	Prupe.1G106700_v2.0.a1
pyrus_communis	pycom13g12300 pycom16g12170
rosa_chinensis	RchiOBHm_Chr4g0427331
rosa_multiflora	Rmu_sc0008400.1_g000001
rosa_rugosa	Rorug04G0216700
rosa_samantha	Rh4AG273000 Rh4BG278700 Rh4CG294000 Rh4DG276100
rosa_wichuraiana	Rw4G023690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	1232
AciI	CCGC	2 cut(s)	1040, 1232
AclI	AACGTT	1 cut(s)	1328
AclWI	GGATC	1 cut(s)	1422
AcsI	RAATTY	1 cut(s)	167
AcyI	GRCGYC	1 cut(s)	5
AdeI	CACNNNGTG	1 cut(s)	1168
AfaI	GTAC	5 cut(s)	593, 719, 778, 866, 1286
AfiI	CCNNNNNNNGG	2 cut(s)	371, 798
AgsI	TTSAA	6 cut(s)	455, 467, 479, 540, 913, 1323
AluBI	AGCT	8 cut(s)	251, 320, 388, 436, 561, 861, 988, 1408
AluI	AGCT	8 cut(s)	251, 320, 388, 436, 561, 861, 988, 1408
Alw21I	GWGCWC	1 cut(s)	430
Alw26I	GTCTC	4 cut(s)	18, 893, 1133, 1297
Alw44I	GTGCAC	1 cut(s)	426
AlwI	GGATC	1 cut(s)	1422
AlwNI	CAGNNNCTG	1 cut(s)	436
Ama87I	CYCGRG	2 cut(s)	323, 1208
ApaLI	GTGCAC	1 cut(s)	426
ApeKI	GCWGC	5 cut(s)	110, 388, 500, 513, 1190
ApoI	RAATTY	1 cut(s)	167
Asp700I	GAANNNNTTC	1 cut(s)	437
AsuC2I	CCSGG	2 cut(s)	129, 174
AsuHPI	GGTGA	4 cut(s)	784, 1061, 1180, 1246
AsuII	TTCGAA	1 cut(s)	116
AvaI	CYCGRG	2 cut(s)	323, 1208
BaeGI	GKGCMC	1 cut(s)	430
Bbv12I	GWGCWC	1 cut(s)	430
BbvI	GCAGC	5 cut(s)	97, 375, 487, 525, 1177
BccI	CCATC	5 cut(s)	252, 739, 847, 1267, 1432
BceAI	ACGGC	1 cut(s)	178
BcgI	CGANNNNNNTGC	6 cut(s)	505, 539, 1019, 1053, 1199, 1233
BclI	TGATCA	2 cut(s)	739, 1078
BcnI	CCSGG	2 cut(s)	129, 174
BcoDI	GTCTC	4 cut(s)	18, 893, 1133, 1297
BfaI	CTAG	1 cut(s)	989
BglII	AGATCT	1 cut(s)	1377
BisI	GCNGC	5 cut(s)	111, 389, 501, 514, 1191
BlsI	GCNGC	5 cut(s)	112, 390, 502, 515, 1192
BmcAI	AGTACT	1 cut(s)	778
Bme1390I	CCNGG	2 cut(s)	129, 174
BmeT110I	CYCGRG	2 cut(s)	323, 1208
BmiI	GGNNCC	1 cut(s)	186
BmrFI	CCNGG	2 cut(s)	129, 174
BmsI	GCATC	6 cut(s)	89, 99, 520, 610, 1042, 1074
BplI	GAGNNNNNCTC	2 cut(s)	190, 222
Bpu14I	TTCGAA	1 cut(s)	116
BpuEI	CTTGAG	1 cut(s)	590
BpuMI	CCSGG	2 cut(s)	129, 174
BsaAI	YACGTR	1 cut(s)	591
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	2 cut(s)	172, 998
BsaXI	ACNNNNNCTCC	2 cut(s)	848, 878
Bsc4I	CCNNNNNNNGG	2 cut(s)	371, 798
Bse118I	RCCGGY	2 cut(s)	187, 1151
BseDI	CCNNGG	2 cut(s)	172, 998
BseGI	GGATG	5 cut(s)	41, 263, 625, 813, 1048
BseLI	CCNNNNNNNGG	2 cut(s)	371, 798
BseMII	CTCAG	1 cut(s)	641
BseSI	GKGCMC	1 cut(s)	430
BseXI	GCAGC	5 cut(s)	97, 375, 487, 525, 1177
Bsh1236I	CGCG	1 cut(s)	1232
BsiHKAI	GWGCWC	1 cut(s)	430
BsiHKCI	CYCGRG	2 cut(s)	323, 1208
BsiSI	CCGG	5 cut(s)	128, 174, 188, 1152, 1451
BslI	CCNNNNNNNGG	2 cut(s)	371, 798
BsmAI	GTCTC	4 cut(s)	18, 893, 1133, 1297
BsoBI	CYCGRG	2 cut(s)	323, 1208
Bsp119I	TTCGAA	1 cut(s)	116
Bsp1286I	GDGCHC	1 cut(s)	430
Bsp1407I	TGTACA	1 cut(s)	1284
Bsp143I	GATC	7 cut(s)	289, 739, 1078, 1261, 1335, 1377, 1414
BspACI	CCGC	2 cut(s)	1040, 1232
BspCNI	CTCAG	1 cut(s)	640
BspFNI	CGCG	1 cut(s)	1232
BspLI	GGNNCC	1 cut(s)	186
BspPI	GGATC	1 cut(s)	1422
BspQI	GCTCTTC	1 cut(s)	498
BspT104I	TTCGAA	1 cut(s)	116
BsrFI	RCCGGY	2 cut(s)	187, 1151
BsrGI	TGTACA	1 cut(s)	1284
BssAI	RCCGGY	2 cut(s)	187, 1151
BssECI	CCNNGG	2 cut(s)	172, 998
BssMI	GATC	7 cut(s)	289, 739, 1078, 1261, 1335, 1377, 1414
BssNI	GRCGYC	1 cut(s)	5
Bst4CI	ACNGT	5 cut(s)	271, 475, 691, 722, 1423
Bst6I	CTCTTC	3 cut(s)	140, 498, 935
BstACI	GRCGYC	1 cut(s)	5
BstAUI	TGTACA	1 cut(s)	1284
BstBAI	YACGTR	1 cut(s)	591
BstBI	TTCGAA	1 cut(s)	116
BstC8I	GCNNGC	1 cut(s)	784
BstDEI	CTNAG	3 cut(s)	627, 818, 1194
BstDSI	CCRYGG	1 cut(s)	998
BstF5I	GGATG	5 cut(s)	41, 263, 625, 813, 1048
BstFNI	CGCG	1 cut(s)	1232
BstKTI	GATC	7 cut(s)	292, 742, 1081, 1264, 1338, 1380, 1417
BstMAI	GTCTC	4 cut(s)	18, 893, 1133, 1297
BstMBI	GATC	7 cut(s)	289, 739, 1078, 1261, 1335, 1377, 1414
BstMWI	GCNNNNNNNGC	1 cut(s)	497
BstNSI	RCATGY	1 cut(s)	982
BstSCI	CCNGG	2 cut(s)	127, 172
BstSLI	GKGCMC	1 cut(s)	430
BstUI	CGCG	1 cut(s)	1232
BstV1I	GCAGC	5 cut(s)	97, 375, 487, 525, 1177
BstX2I	RGATCY	1 cut(s)	1377
BstYI	RGATCY	1 cut(s)	1377
BtgI	CCRYGG	1 cut(s)	998
BtgZI	GCGATG	1 cut(s)	280
BtsCI	GGATG	5 cut(s)	41, 263, 625, 813, 1048
BtsI	GCAGTG	2 cut(s)	314, 486
BtsIMutI	CAGTG	5 cut(s)	273, 314, 486, 687, 1419
Cac8I	GCNNGC	1 cut(s)	784
CaiI	CAGNNNCTG	1 cut(s)	436
Cfr10I	RCCGGY	2 cut(s)	187, 1151
Csp6I	GTAC	5 cut(s)	592, 718, 777, 865, 1285
CviAII	CATG	7 cut(s)	382, 835, 850, 970, 979, 1063, 1339
CviQI	GTAC	5 cut(s)	592, 718, 777, 865, 1285
DdeI	CTNAG	3 cut(s)	627, 818, 1194
DpnI	GATC	7 cut(s)	291, 741, 1080, 1263, 1337, 1379, 1416
DpnII	GATC	7 cut(s)	289, 739, 1078, 1261, 1335, 1377, 1414
DraIII	CACNNNGTG	1 cut(s)	1168
Eam1104I	CTCTTC	3 cut(s)	140, 498, 935
EarI	CTCTTC	3 cut(s)	140, 498, 935
Eco32I	GATATC	1 cut(s)	1239
Eco88I	CYCGRG	2 cut(s)	323, 1208
EcoRI	GAATTC	1 cut(s)	167
EcoRV	GATATC	1 cut(s)	1239
FaeI	CATG	7 cut(s)	385, 838, 853, 973, 982, 1066, 1342
FalI	AAGNNNNNCTT	2 cut(s)	447, 479
FatI	CATG	7 cut(s)	381, 834, 849, 969, 978, 1062, 1338
FbaI	TGATCA	2 cut(s)	739, 1078
Fnu4HI	GCNGC	5 cut(s)	111, 389, 501, 514, 1191
FokI	GGATG	5 cut(s)	28, 270, 632, 800, 1055
Fsp4HI	GCNGC	5 cut(s)	111, 389, 501, 514, 1191
FspBI	CTAG	1 cut(s)	989
GluI	GCNGC	5 cut(s)	111, 389, 501, 514, 1191
HapII	CCGG	5 cut(s)	128, 174, 188, 1152, 1451
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	7 cut(s)	385, 838, 853, 973, 982, 1066, 1342
HincII	GTYRAC	3 cut(s)	265, 416, 1071
HindII	GTYRAC	3 cut(s)	265, 416, 1071
HindIII	AAGCTT	2 cut(s)	559, 1406
HinfI	GANTC	6 cut(s)	48, 177, 644, 901, 1319, 1444
HpaI	GTTAAC	1 cut(s)	265
HpaII	CCGG	5 cut(s)	128, 174, 188, 1152, 1451
HphI	GGTGA	4 cut(s)	784, 1061, 1180, 1246
Hpy166II	GTNNAC	7 cut(s)	265, 416, 428, 801, 1002, 1071, 1285
Hpy188I	TCNGA	9 cut(s)	198, 210, 289, 731, 744, 763, 906, 1083, 1266
Hpy188III	TCNNGA	5 cut(s)	45, 323, 545, 877, 1323
Hpy8I	GTNNAC	7 cut(s)	265, 416, 428, 801, 1002, 1071, 1285
Hpy99I	CGWCG	2 cut(s)	446, 530
HpyAV	CCTTC	7 cut(s)	50, 365, 452, 726, 1088, 1291, 1355
HpyCH4III	ACNGT	5 cut(s)	271, 475, 691, 722, 1423
HpyCH4IV	ACGT	2 cut(s)	590, 1328
HpyCH4V	TGCA	3 cut(s)	428, 786, 1055
HpyF10VI	GCNNNNNNNGC	1 cut(s)	497
HpyF3I	CTNAG	3 cut(s)	627, 818, 1194
HpySE526I	ACGT	2 cut(s)	590, 1328
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	7 cut(s)	385, 838, 853, 973, 982, 1066, 1342
Ksp22I	TGATCA	2 cut(s)	739, 1078
KspAI	GTTAAC	1 cut(s)	265
Kzo9I	GATC	7 cut(s)	289, 739, 1078, 1261, 1335, 1377, 1414
LguI	GCTCTTC	1 cut(s)	498
LmnI	GCTCC	1 cut(s)	184
Lsp1109I	GCAGC	5 cut(s)	97, 375, 487, 525, 1177
LweI	GCATC	6 cut(s)	89, 99, 520, 610, 1042, 1074
MaeI	CTAG	1 cut(s)	989
MaeII	ACGT	2 cut(s)	590, 1328
MaeIII	GTNAC	5 cut(s)	74, 136, 271, 312, 691
MalI	GATC	7 cut(s)	291, 741, 1080, 1263, 1337, 1379, 1416
MboI	GATC	7 cut(s)	289, 739, 1078, 1261, 1335, 1377, 1414
MflI	RGATCY	1 cut(s)	1377
MhlI	GDGCHC	1 cut(s)	430
MluCI	AATT	2 cut(s)	167, 540
MlyI	GAGTC	1 cut(s)	895
MmeI	TCCRAC	1 cut(s)	709
MnlI	CCTC	7 cut(s)	141, 319, 336, 576, 1024, 1339, 1392
MroXI	GAANNNNTTC	1 cut(s)	437
MseI	TTAA	3 cut(s)	192, 264, 710
MslI	CAYNNNNRTG	2 cut(s)	81, 1292
MspI	CCGG	5 cut(s)	128, 174, 188, 1152, 1451
MspR9I	CCNGG	2 cut(s)	129, 174
MvnI	CGCG	1 cut(s)	1232
MwoI	GCNNNNNNNGC	1 cut(s)	497
NciI	CCSGG	2 cut(s)	129, 174
NdeII	GATC	7 cut(s)	289, 739, 1078, 1261, 1335, 1377, 1414
NlaIII	CATG	7 cut(s)	385, 838, 853, 973, 982, 1066, 1342
NlaIV	GGNNCC	1 cut(s)	186
NmuCI	GTSAC	3 cut(s)	74, 271, 691
NspI	RCATGY	1 cut(s)	982
NspV	TTCGAA	1 cut(s)	116
PaeR7I	CTCGAG	1 cut(s)	323
PciSI	GCTCTTC	1 cut(s)	498
PcsI	WCGNNNNNNNCGW	1 cut(s)	99
PdmI	GAANNNNTTC	1 cut(s)	437
PfeI	GAWTC	5 cut(s)	48, 177, 644, 1319, 1444
PfoI	TCCNGGA	1 cut(s)	127
PkrI	GCNGC	5 cut(s)	112, 390, 502, 515, 1192
PleI	GAGTC	1 cut(s)	895
PpsI	GAGTC	1 cut(s)	895
Ppu21I	YACGTR	1 cut(s)	591
Psp1406I	AACGTT	1 cut(s)	1328
PspN4I	GGNNCC	1 cut(s)	186
PsrI	GAACNNNNNNTAC	2 cut(s)	857, 889
PstNI	CAGNNNCTG	1 cut(s)	436
PsuI	RGATCY	1 cut(s)	1377
RsaI	GTAC	5 cut(s)	593, 719, 778, 866, 1286
RsaNI	GTAC	5 cut(s)	592, 718, 777, 865, 1285
RseI	CAYNNNNRTG	2 cut(s)	81, 1292
SapI	GCTCTTC	1 cut(s)	498
SaqAI	TTAA	3 cut(s)	192, 264, 710
SatI	GCNGC	5 cut(s)	111, 389, 501, 514, 1191
Sau3AI	GATC	7 cut(s)	289, 739, 1078, 1261, 1335, 1377, 1414
ScaI	AGTACT	1 cut(s)	778
SchI	GAGTC	1 cut(s)	895
ScrFI	CCNGG	2 cut(s)	129, 174
SduI	GDGCHC	1 cut(s)	430
SfaNI	GCATC	6 cut(s)	89, 99, 520, 610, 1042, 1074
Sfr274I	CTCGAG	1 cut(s)	323
SfuI	TTCGAA	1 cut(s)	116
SlaI	CTCGAG	1 cut(s)	323
SmiMI	CAYNNNNRTG	2 cut(s)	81, 1292
SmlI	CTYRAG	2 cut(s)	323, 605
SmoI	CTYRAG	2 cut(s)	323, 605
Sse9I	AATT	2 cut(s)	167, 540
SsiI	CCGC	2 cut(s)	1040, 1232
SspI	AATATT	1 cut(s)	916
SspMI	CTAG	1 cut(s)	989
StyD4I	CCNGG	2 cut(s)	127, 172
TaaI	ACNGT	5 cut(s)	271, 475, 691, 722, 1423
TaiI	ACGT	2 cut(s)	593, 1331
TaqI	TCGA	6 cut(s)	116, 324, 441, 525, 1029, 1344
TasI	AATT	2 cut(s)	167, 540
TatI	WGTACW	2 cut(s)	776, 1284
TfiI	GAWTC	5 cut(s)	48, 177, 644, 1319, 1444
Tru1I	TTAA	3 cut(s)	192, 264, 710
Tru9I	TTAA	3 cut(s)	192, 264, 710
TscAI	CASTG	5 cut(s)	280, 314, 493, 694, 1426
TseFI	GTSAC	3 cut(s)	74, 271, 691
TseI	GCWGC	5 cut(s)	110, 388, 500, 513, 1190
Tsp45I	GTSAC	3 cut(s)	74, 271, 691
TspDTI	ATGAA	8 cut(s)	30, 398, 569, 821, 1115, 1310, 1368, 1382
TspGWI	ACGGA	4 cut(s)	197, 270, 987, 1152
TspRI	CASTG	5 cut(s)	280, 314, 493, 694, 1426
VneI	GTGCAC	1 cut(s)	426
XapI	RAATTY	1 cut(s)	167
XceI	RCATGY	1 cut(s)	982
XhoI	CTCGAG	1 cut(s)	323
XmnI	GAANNNNTTC	1 cut(s)	437
XspI	CTAG	1 cut(s)	989
ZrmI	AGTACT	1 cut(s)	778

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.