Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0016024

Physical Location & Seq

Genomic Coordinates Forward (+)

10549365 .. 10551907

Gene Structure 2543 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1137800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1788 bp

ATGGCTTCTTCAATCTCTCTCTCCTTCTCTTCCTCTCTCCTCCCTCATCCTCTTCCTTTCAACAAAAACTCCACCGCCGCCCAGAAACCCCAATACCCCAACTTTAAGCTGCTCCTCCGTGCATTCACCACCCCAGCTGTAAGCCGTCGCTCCACTTCATCTCCGTCTTCCGACACCAGAAAGAGGCACTGGAAGAAAGGTGAGTACCCAGGCGTCTCAGAGACGTCGACTCCGACGAATTACAGGAAAGCCCCCGGTCGCTCCACTTCATCTCCGTCTTCCGACACCAGAAAGAAGCACTGGAAGCGAGGCGAATTCCCTGGCGTCTCAGAGACGTCGACTCCGGCGACTTACAGAAAGCCCCCCGCTCGTTCCACTTCCTATCCGTCTTCGGAGACCAGAAAGAAGCACTGGAAGCAAGGGGAGTTCCCGGGGTTCTCGGAGACGTCGATTCCGGCGGTTTACAGAAAACCCCCTTTGAAAAATGTGAAGAAGAAGCTGGACCGGAAGAACAATGCCAAGGCCTGGGTGAACACCGTCACCGAAGCCCTTTCCGACGCCATTGACAAGAAGCAGTGGCTCCAAGCTCTTGAGGTGTTTGACATGCTTAGAGAGCAACCATTTTATCAACCGAAAGAAGGGACTTACATGAAACTCATTGGGCTGCTTGGAAGGTGCAGCCAACCCAATCGTGCCCGCCAGCTTTTCGATACAATGGTTGAAGAGGGCTGTGAACCAACTCTTGAACTTTACACAGCCTTGCTCACGGCTTATTGTCGGAACAATCTGATTGACGAGGCATTTTCTGTTCTCAACCTGATGAAGACCCTCCCACAATGCCAGCCTGACGTTTTTACCTATAGTACCTTGATTAAGGTTTGCATTGATCATTTGAAGTTTGATTTAGTTGAGTCCTTGTATGAGGAAATGGCTGAGCGGTTGATAATTCCAAACACGGTCACCCAAAACATCGTGTTGAGTGGATATGGTAAGGCTGGGAAGTATGACCAGATGGAAAAGGTGTTGTCGGGGATGCTGGAGGGTACAAGTTGCAAGCCAGATGTCTGGACAATGAATGTTATCCTTAGTGTGTTTGGAAACAAGGGTCAGATAGATATGATGGAGAGGTGGTATGAGAAATTCCGTGATTTTGGGATTGAGCCGGAAACTCGCACTTTTAACATTCTGATTGGTGCTTACGGGAAGAAGAGGTTGTATGATAAGATGTCAACTGTGATGGAGTACATGCGCAAGCTTCAATTCCCATGGACAACCGCAACTTACAACAATGTGATTGAGGCTTTTGCAGACGTAGGAGATGCAAAAAACATGGAATACACATTTGAACAGATGCGTGCTGAGGGCATGAAAGCAGACACCAAAACATTCTGCTGCCTTATTAATGGGTATGCCAATGCAGGCCTCTTCCATAAGGTGGTTAGCAGCGTTCAGTTGGCTGGAAAGTTTGAGATACCTGAGAATACCACATTTTATAATGCGGTGATAGCTGCATGTGCAAAGGCACAGGATTTGATGGAGATGGAGAGAGTTTTCAACCGGATGAAAGATAAGCAATGTCAACCAGATTCCACAACATACTCTCTTATGGTTGAGGCGTATAGTAAGGAAGGTATGAACGACAAGATCTACTACTTGGAGCAGGAGATTGGTGCTGATGGTAATCAGATTGATCAGATTAGTGCTGAAGGCAATCAAAATGATCAGATTAGTGTTGAAGATAATCAAAGTGATCAGGCTTCTGGAGCTGAGTCTGGAGTTGTTGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009553 GO:0009555 GO:0009790 GO:0009791 GO:0009793 GO:0009856 GO:0009987 GO:0010154 GO:0016070 GO:0016787 GO:0016788 GO:0019843 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0044706 GO:0046483 GO:0048229 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0048868 GO:0051704 GO:0061458 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

596

Amino Acids

67.37

Weight (kDa)

8.54

Isoelectric Point (pI)

41.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_3	PF13812	235 - 295	1.5e-08	Pentatricopeptide repeat domain
PPR_1	PF12854	243 - 275	6.2e-08	PPR repeat
PPR_2	PF13041	251 - 294	1.1e-11	PPR repeat family
PPR	PF01535	251 - 275	1e-05	PPR repeat
PPR_2	PF13041	282 - 330	2.2e-09	PPR repeat family
PPR_3	PF13812	306 - 367	3.2e-06	Pentatricopeptide repeat domain
PPR_2	PF13041	317 - 362	2.4e-07	PPR repeat family
PPR_2	PF13041	353 - 401	6.6e-08	PPR repeat family
PPR_2	PF13041	388 - 436	3e-06	PPR repeat family
PPR_2	PF13041	425 - 472	7.3e-08	PPR repeat family
PPR_2	PF13041	494 - 542	2.5e-11	PPR repeat family
PPR_3	PF13812	494 - 542	3.4e-07	Pentatricopeptide repeat domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016024)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06430
fragaria_vesca	FvH4_4g21400
malus_domestica	MD13G1141500.v1.1 MD16G1137800.v1.1
prunus_persica	Prupe.1G106700_v2.0.a1
pyrus_communis	pycom13g12300 pycom16g12170
rosa_chinensis	RchiOBHm_Chr4g0427331
rosa_multiflora	Rmu_sc0008400.1_g000001
rosa_rugosa	Rorug04G0216700
rosa_samantha	Rh4AG273000 Rh4BG278700 Rh4CG294000 Rh4DG276100
rosa_wichuraiana	Rw4G023690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1494
AatII	GACGTC	3 cut(s)	227, 338, 449
Acc16I	TGCGCA	1 cut(s)	1250
AccB7I	CCANNNNNTGG	2 cut(s)	525, 1435
AccBSI	CCGCTC	2 cut(s)	368, 937
AccI	GTMKAC	2 cut(s)	227, 338
AciI	CCGC	8 cut(s)	75, 78, 366, 458, 697, 937, 1275, 1499
AcsI	RAATTY	2 cut(s)	314, 1139
AcuI	CTGAAG	1 cut(s)	1725
AcyI	GRCGYC	6 cut(s)	213, 224, 324, 335, 446, 558
AfaI	GTAC	4 cut(s)	206, 865, 1045, 1244
AfiI	CCNNNNNNNGG	4 cut(s)	183, 525, 638, 1435
AjnI	CCWGG	3 cut(s)	208, 319, 524
AluBI	AGCT	8 cut(s)	109, 137, 499, 587, 703, 1255, 1508, 1766
AluI	AGCT	8 cut(s)	109, 137, 499, 587, 703, 1255, 1508, 1766
Alw26I	GTCTC	6 cut(s)	215, 220, 326, 331, 389, 437
Ama87I	CYCGRG	1 cut(s)	430
AoxI	GGCC	2 cut(s)	522, 1420
ApeKI	GCWGC	6 cut(s)	109, 664, 678, 1392, 1443, 1508
ApoI	RAATTY	2 cut(s)	314, 1139
AseI	ATTAAT	1 cut(s)	1401
AspLEI	GCGC	1 cut(s)	1251
AspS9I	GGNCC	1 cut(s)	502
AsuC2I	CCSGG	3 cut(s)	255, 431, 432
AsuHPI	GGTGA	6 cut(s)	118, 212, 532, 541, 952, 1513
AvaI	CYCGRG	1 cut(s)	430
AvaII	GGWCC	1 cut(s)	502
BaeGI	GKGCMC	1 cut(s)	697
BaeI	ACNNNNGTAYC	2 cut(s)	702, 735
BbsI	GAAGAC	4 cut(s)	159, 270, 381, 830
BbvCI	CCTCAGC	1 cut(s)	1359
BbvI	GCAGC	6 cut(s)	96, 651, 690, 1379, 1455, 1495
BccI	CCATC	6 cut(s)	1006, 1114, 1231, 1528, 1534, 1670
BceAI	ACGGC	2 cut(s)	129, 783
BciT130I	CCWGG	3 cut(s)	210, 321, 526
BclI	TGATCA	4 cut(s)	886, 1690, 1720, 1750
BcnI	CCSGG	3 cut(s)	255, 431, 432
BcoDI	GTCTC	6 cut(s)	215, 220, 326, 331, 389, 437
BfmI	CTRYAG	1 cut(s)	859
BglII	AGATCT	1 cut(s)	1644
BisI	GCNGC	7 cut(s)	78, 110, 665, 679, 1393, 1444, 1509
BlpI	GCTNAGC	1 cut(s)	933
BlsI	GCNGC	7 cut(s)	79, 111, 666, 680, 1394, 1445, 1510
Bme1390I	CCNGG	6 cut(s)	210, 255, 321, 431, 432, 526
Bme18I	GGWCC	1 cut(s)	502
BmeT110I	CYCGRG	1 cut(s)	430
BmgT120I	GGNCC	1 cut(s)	502
BmiI	GGNNCC	1 cut(s)	581
BmrFI	CCNGG	6 cut(s)	210, 255, 321, 431, 432, 526
BmsI	GCATC	3 cut(s)	1023, 1309, 1341
BpiI	GAAGAC	4 cut(s)	159, 270, 381, 830
BpmI	CTGGAG	2 cut(s)	1058, 1782
Bpu10I	CCTNAGC	1 cut(s)	1359
Bpu1102I	GCTNAGC	1 cut(s)	933
BpuEI	CTTGAG	1 cut(s)	611
BpuMI	CCSGG	3 cut(s)	255, 431, 432
BsaBI	GATNNNNATC	1 cut(s)	1680
BsaHI	GRCGYC	6 cut(s)	213, 224, 324, 335, 446, 558
BsaI	GGTCTC	1 cut(s)	389
BsaJI	CCNNGG	8 cut(s)	208, 253, 319, 430, 431, 519, 525, 1265
BsaWI	WCCGGW	2 cut(s)	504, 1557
Bsc4I	CCNNNNNNNGG	4 cut(s)	183, 525, 638, 1435
Bse1I	ACTGG	3 cut(s)	194, 305, 416
Bse3DI	GCAATG	1 cut(s)	1580
Bse8I	GATNNNNATC	1 cut(s)	1680
BseBI	CCWGG	3 cut(s)	210, 321, 526
BseDI	CCNNGG	8 cut(s)	208, 253, 319, 430, 431, 519, 525, 1265
BseGI	GGATG	3 cut(s)	46, 1038, 1566
BseJI	GATNNNNATC	1 cut(s)	1680
BseLI	CCNNNNNNNGG	4 cut(s)	183, 525, 638, 1435
BseMI	GCAATG	1 cut(s)	1580
BseMII	CTCAG	6 cut(s)	231, 342, 924, 1350, 1467, 1758
BseNI	ACTGG	3 cut(s)	194, 305, 416
BseRI	GAGGAG	2 cut(s)	29, 104
BseSI	GKGCMC	1 cut(s)	697
BseXI	GCAGC	6 cut(s)	96, 651, 690, 1379, 1455, 1495
BseYI	CCCAGC	2 cut(s)	133, 995
BsgI	GTGCAG	1 cut(s)	697
Bsh1285I	CGRYCG	1 cut(s)	259
BshFI	GGCC	2 cut(s)	524, 1422
BsiEI	CGRYCG	1 cut(s)	259
BsiHKCI	CYCGRG	1 cut(s)	430
BsiSI	CCGG	7 cut(s)	255, 344, 431, 455, 505, 1163, 1558
BslFI	GGGAC	1 cut(s)	655
BslI	CCNNNNNNNGG	4 cut(s)	183, 525, 638, 1435
BsmAI	GTCTC	6 cut(s)	215, 220, 326, 331, 389, 437
BsmBI	CGTCTC	5 cut(s)	215, 220, 326, 331, 437
BsmFI	GGGAC	1 cut(s)	655
BsmI	GAATGC	1 cut(s)	122
BsnI	GGCC	2 cut(s)	524, 1422
Bso31I	GGTCTC	1 cut(s)	389
BsoBI	CYCGRG	1 cut(s)	430
Bsp1286I	GDGCHC	1 cut(s)	697
Bsp143I	GATC	5 cut(s)	886, 1644, 1690, 1720, 1750
Bsp1720I	GCTNAGC	1 cut(s)	933
Bsp19I	CCATGG	1 cut(s)	1265
BspACI	CCGC	8 cut(s)	75, 78, 366, 458, 697, 937, 1275, 1499
BspANI	GGCC	2 cut(s)	524, 1422
BspCNI	CTCAG	6 cut(s)	230, 341, 925, 1351, 1468, 1759
BspLI	GGNNCC	1 cut(s)	581
BspTNI	GGTCTC	1 cut(s)	389
BsrBI	CCGCTC	2 cut(s)	368, 937
BsrDI	GCAATG	1 cut(s)	1580
BsrI	ACTGG	3 cut(s)	194, 305, 416
BssECI	CCNNGG	8 cut(s)	208, 253, 319, 430, 431, 519, 525, 1265
BssMI	GATC	5 cut(s)	886, 1644, 1690, 1720, 1750
BssNI	GRCGYC	6 cut(s)	213, 224, 324, 335, 446, 558
BssT1I	CCWWGG	2 cut(s)	519, 1265
Bst2UI	CCWGG	3 cut(s)	210, 321, 526
Bst4CI	ACNGT	3 cut(s)	538, 958, 1234
Bst6I	CTCTTC	5 cut(s)	34, 57, 717, 1202, 1430
BstACI	GRCGYC	6 cut(s)	213, 224, 324, 335, 446, 558
BstC8I	GCNNGC	7 cut(s)	697, 701, 842, 1055, 1253, 1356, 1420
BstDEI	CTNAG	8 cut(s)	217, 328, 608, 933, 1085, 1359, 1476, 1767
BstDSI	CCRYGG	1 cut(s)	1265
BstEII	GGTNACC	1 cut(s)	958
BstF5I	GGATG	3 cut(s)	46, 1038, 1566
BstHHI	GCGC	1 cut(s)	1251
BstKTI	GATC	5 cut(s)	889, 1647, 1693, 1723, 1753
BstMAI	GTCTC	6 cut(s)	215, 220, 326, 331, 389, 437
BstMBI	GATC	5 cut(s)	886, 1644, 1690, 1720, 1750
BstMCI	CGRYCG	1 cut(s)	259
BstMWI	GCNNNNNNNGC	6 cut(s)	304, 415, 613, 1505, 1514, 1763
BstNI	CCWGG	3 cut(s)	210, 321, 526
BstNSI	RCATGY	3 cut(s)	607, 1249, 1515
BstPI	GGTNACC	1 cut(s)	958
BstSCI	CCNGG	6 cut(s)	208, 253, 319, 429, 430, 524
BstSFI	CTRYAG	1 cut(s)	859
BstSLI	GKGCMC	1 cut(s)	697
BstV1I	GCAGC	6 cut(s)	96, 651, 690, 1379, 1455, 1495
BstV2I	GAAGAC	4 cut(s)	159, 270, 381, 830
BstX2I	RGATCY	1 cut(s)	1644
BstXI	CCANNNNNNTGG	1 cut(s)	1065
BstYI	RGATCY	1 cut(s)	1644
BsuRI	GGCC	2 cut(s)	524, 1422
BtgI	CCRYGG	1 cut(s)	1265
BtsCI	GGATG	3 cut(s)	46, 1038, 1566
BtsI	GCAGTG	1 cut(s)	581
BtsIMutI	CAGTG	4 cut(s)	187, 298, 409, 581
Cac8I	GCNNGC	7 cut(s)	697, 701, 842, 1055, 1253, 1356, 1420
CfoI	GCGC	1 cut(s)	1251
Cfr13I	GGNCC	1 cut(s)	502
Cfr9I	CCCGGG	1 cut(s)	430
CseI	GACGC	3 cut(s)	202, 313, 566
Csp6I	GTAC	4 cut(s)	205, 864, 1044, 1243
CviAII	CATG	7 cut(s)	604, 649, 1246, 1266, 1330, 1366, 1512
CviQI	GTAC	4 cut(s)	205, 864, 1044, 1243
DdeI	CTNAG	8 cut(s)	217, 328, 608, 933, 1085, 1359, 1476, 1767
DpnI	GATC	5 cut(s)	888, 1646, 1692, 1722, 1752
DpnII	GATC	5 cut(s)	886, 1644, 1690, 1720, 1750
Eam1104I	CTCTTC	5 cut(s)	34, 57, 717, 1202, 1430
EarI	CTCTTC	5 cut(s)	34, 57, 717, 1202, 1430
Eco130I	CCWWGG	2 cut(s)	519, 1265
Eco147I	AGGCCT	2 cut(s)	524, 1422
Eco31I	GGTCTC	1 cut(s)	389
Eco47I	GGWCC	1 cut(s)	502
Eco57I	CTGAAG	1 cut(s)	1725
Eco88I	CYCGRG	1 cut(s)	430
Eco91I	GGTNACC	1 cut(s)	958
EcoO65I	GGTNACC	1 cut(s)	958
EcoRI	GAATTC	1 cut(s)	314
EcoRII	CCWGG	3 cut(s)	208, 319, 524
EcoT14I	CCWWGG	2 cut(s)	519, 1265
ErhI	CCWWGG	2 cut(s)	519, 1265
Esp3I	CGTCTC	5 cut(s)	215, 220, 326, 331, 437
FaeI	CATG	7 cut(s)	607, 652, 1249, 1269, 1333, 1369, 1515
FaqI	GGGAC	1 cut(s)	655
FatI	CATG	7 cut(s)	603, 648, 1245, 1265, 1329, 1365, 1511
FauI	CCCGC	2 cut(s)	373, 704
FbaI	TGATCA	4 cut(s)	886, 1690, 1720, 1750
FblI	GTMKAC	2 cut(s)	227, 338
Fnu4HI	GCNGC	7 cut(s)	78, 110, 665, 679, 1393, 1444, 1509
FokI	GGATG	3 cut(s)	33, 1045, 1573
Fsp4HI	GCNGC	7 cut(s)	78, 110, 665, 679, 1393, 1444, 1509
FspI	TGCGCA	1 cut(s)	1250
GlaI	GCGC	1 cut(s)	1250
GluI	GCNGC	7 cut(s)	78, 110, 665, 679, 1393, 1444, 1509
GsaI	CCCAGC	2 cut(s)	137, 999
GsuI	CTGGAG	2 cut(s)	1058, 1782
HaeIII	GGCC	2 cut(s)	524, 1422
HapII	CCGG	7 cut(s)	255, 344, 431, 455, 505, 1163, 1558
HgaI	GACGC	3 cut(s)	202, 313, 566
HhaI	GCGC	1 cut(s)	1251
Hin1I	GRCGYC	6 cut(s)	213, 224, 324, 335, 446, 558
Hin1II	CATG	7 cut(s)	607, 652, 1249, 1269, 1333, 1369, 1515
Hin6I	GCGC	1 cut(s)	1249
HinP1I	GCGC	1 cut(s)	1249
HincII	GTYRAC	4 cut(s)	228, 339, 1230, 1580
HindII	GTYRAC	4 cut(s)	228, 339, 1230, 1580
HindIII	AAGCTT	1 cut(s)	1253
HinfI	GANTC	6 cut(s)	229, 340, 451, 911, 1586, 1769
HpaII	CCGG	7 cut(s)	255, 344, 431, 455, 505, 1163, 1558
HphI	GGTGA	6 cut(s)	118, 212, 532, 541, 952, 1513
Hpy166II	GTNNAC	7 cut(s)	228, 339, 463, 532, 734, 1230, 1580
Hpy188III	TCNNGA	5 cut(s)	590, 743, 1066, 1761, 1773
Hpy8I	GTNNAC	7 cut(s)	228, 339, 463, 532, 734, 1230, 1580
Hpy99I	CGWCG	6 cut(s)	150, 229, 238, 340, 451, 560
HpyAV	CCTTC	5 cut(s)	34, 632, 666, 1622, 1700
HpyCH4III	ACNGT	3 cut(s)	538, 958, 1234
HpyCH4IV	ACGT	5 cut(s)	224, 335, 446, 849, 1311
HpyCH4V	TGCA	9 cut(s)	122, 678, 882, 1053, 1307, 1322, 1418, 1511, 1517
HpyF10VI	GCNNNNNNNGC	6 cut(s)	304, 415, 613, 1505, 1514, 1763
HpyF3I	CTNAG	8 cut(s)	217, 328, 608, 933, 1085, 1359, 1476, 1767
HpySE526I	ACGT	5 cut(s)	224, 335, 446, 849, 1311
Hsp92I	GRCGYC	6 cut(s)	213, 224, 324, 335, 446, 558
Hsp92II	CATG	7 cut(s)	607, 652, 1249, 1269, 1333, 1369, 1515
HspAI	GCGC	1 cut(s)	1249
Ksp22I	TGATCA	4 cut(s)	886, 1690, 1720, 1750
Kzo9I	GATC	5 cut(s)	886, 1644, 1690, 1720, 1750
LmnI	GCTCC	6 cut(s)	117, 155, 266, 585, 1657, 1763
Lsp1109I	GCAGC	6 cut(s)	96, 651, 690, 1379, 1455, 1495
LweI	GCATC	3 cut(s)	1023, 1309, 1341
MaeII	ACGT	5 cut(s)	224, 335, 446, 849, 1311
MaeIII	GTNAC	2 cut(s)	538, 958
MalI	GATC	5 cut(s)	888, 1646, 1692, 1722, 1752
MbiI	CCGCTC	2 cut(s)	368, 937
MboI	GATC	5 cut(s)	886, 1644, 1690, 1720, 1750
MflI	RGATCY	1 cut(s)	1644
MhlI	GDGCHC	1 cut(s)	697
MluCI	AATT	5 cut(s)	238, 314, 945, 1139, 1259
MlyI	GAGTC	4 cut(s)	223, 334, 920, 1778
MmeI	TCCRAC	5 cut(s)	195, 257, 306, 579, 758
MseI	TTAA	4 cut(s)	105, 873, 1179, 1401
MspA1I	CMGCKG	1 cut(s)	137
MspI	CCGG	7 cut(s)	255, 344, 431, 455, 505, 1163, 1558
MspR9I	CCNGG	6 cut(s)	210, 255, 321, 431, 432, 526
Mva1269I	GAATGC	1 cut(s)	122
MvaI	CCWGG	3 cut(s)	210, 321, 526
MwoI	GCNNNNNNNGC	6 cut(s)	304, 415, 613, 1505, 1514, 1763
NciI	CCSGG	3 cut(s)	255, 431, 432
NcoI	CCATGG	1 cut(s)	1265
NdeII	GATC	5 cut(s)	886, 1644, 1690, 1720, 1750
NlaIII	CATG	7 cut(s)	607, 652, 1249, 1269, 1333, 1369, 1515
NlaIV	GGNNCC	1 cut(s)	581
NmuCI	GTSAC	2 cut(s)	538, 958
NsbI	TGCGCA	1 cut(s)	1250
NspI	RCATGY	3 cut(s)	607, 1249, 1515
PceI	AGGCCT	2 cut(s)	524, 1422
PcsI	WCGNNNNNNNCGW	4 cut(s)	230, 233, 344, 446
PctI	GAATGC	1 cut(s)	122
PfeI	GAWTC	2 cut(s)	451, 1586
PflMI	CCANNNNNTGG	2 cut(s)	525, 1435
PkrI	GCNGC	7 cut(s)	79, 111, 666, 680, 1394, 1445, 1510
PleI	GAGTC	4 cut(s)	223, 334, 919, 1777
PpsI	GAGTC	4 cut(s)	223, 334, 919, 1777
PshBI	ATTAAT	1 cut(s)	1401
PsiI	TTATAA	1 cut(s)	1494
Psp6I	CCWGG	3 cut(s)	208, 319, 524
PspEI	GGTNACC	1 cut(s)	958
PspFI	CCCAGC	2 cut(s)	133, 995
PspGI	CCWGG	3 cut(s)	208, 319, 524
PspN4I	GGNNCC	1 cut(s)	581
PspPI	GGNCC	1 cut(s)	502
PsuI	RGATCY	1 cut(s)	1644
PvuII	CAGCTG	1 cut(s)	137
RsaI	GTAC	4 cut(s)	206, 865, 1045, 1244
RsaNI	GTAC	4 cut(s)	205, 864, 1044, 1243
SalI	GTCGAC	2 cut(s)	226, 337
SaqAI	TTAA	4 cut(s)	105, 873, 1179, 1401
SatI	GCNGC	7 cut(s)	78, 110, 665, 679, 1393, 1444, 1509
Sau3AI	GATC	5 cut(s)	886, 1644, 1690, 1720, 1750
Sau96I	GGNCC	1 cut(s)	502
SchI	GAGTC	4 cut(s)	223, 334, 920, 1778
ScrFI	CCNGG	6 cut(s)	210, 255, 321, 431, 432, 526
SduI	GDGCHC	1 cut(s)	697
SfaNI	GCATC	3 cut(s)	1023, 1309, 1341
SfcI	CTRYAG	1 cut(s)	859
SinI	GGWCC	1 cut(s)	502
SmaI	CCCGGG	1 cut(s)	432
SmlI	CTYRAG	1 cut(s)	590
SmoI	CTYRAG	1 cut(s)	590
Sse9I	AATT	5 cut(s)	238, 314, 945, 1139, 1259
SseBI	AGGCCT	2 cut(s)	524, 1422
SsiI	CCGC	8 cut(s)	75, 78, 366, 458, 697, 937, 1275, 1499
StuI	AGGCCT	2 cut(s)	524, 1422
StyD4I	CCNGG	6 cut(s)	208, 253, 319, 429, 430, 524
StyI	CCWWGG	2 cut(s)	519, 1265
TaaI	ACNGT	3 cut(s)	538, 958, 1234
TaiI	ACGT	5 cut(s)	227, 338, 449, 852, 1314
TaqI	TCGA	4 cut(s)	227, 338, 449, 708
TasI	AATT	5 cut(s)	238, 314, 945, 1139, 1259
TatI	WGTACW	1 cut(s)	1242
TauI	GCSGC	1 cut(s)	80
TfiI	GAWTC	2 cut(s)	451, 1586
Tru1I	TTAA	4 cut(s)	105, 873, 1179, 1401
Tru9I	TTAA	4 cut(s)	105, 873, 1179, 1401
TscAI	CASTG	4 cut(s)	194, 305, 416, 581
TseFI	GTSAC	2 cut(s)	538, 958
TseI	GCWGC	6 cut(s)	109, 664, 678, 1392, 1443, 1508
Tsp45I	GTSAC	2 cut(s)	538, 958
TspDTI	ATGAA	8 cut(s)	147, 258, 665, 836, 1088, 1382, 1577, 1649
TspGWI	ACGGA	5 cut(s)	107, 153, 264, 375, 1133
TspMI	CCCGGG	1 cut(s)	430
TspRI	CASTG	4 cut(s)	194, 305, 416, 581
Van91I	CCANNNNNTGG	2 cut(s)	525, 1435
VpaK11BI	GGWCC	1 cut(s)	502
VspI	ATTAAT	1 cut(s)	1401
XapI	RAATTY	2 cut(s)	314, 1139
XceI	RCATGY	3 cut(s)	607, 1249, 1515
XmaI	CCCGGG	1 cut(s)	430
XmiI	GTMKAC	2 cut(s)	227, 338
ZraI	GACGTC	3 cut(s)	225, 336, 447

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.