FvH4_4g21400

Pentatricopeptide repeat-containing protein At3g06430

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
Physical Location & Seq
Forward (+)
24457429 .. 24459467
2039 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g21400.t1

Sequence Viewer

Length: 1455 bp
ATGGCTTCTTCAGTCTCACTCTCGTTCTCTTCTTCCCTCCACCCTCATCCCCTCAAAACCCCCACCACCCACAGAGCCCAAGACCCGAACTTCAACCCGACCCACTGCGCCTACGCACCTCCTTCCAAAACCAGGTCACCTTCTTCCTCCTGCTCCTCTTCTCAGACCAGAAAGAAGCACTGGAAGCAAGGCGAATTCCCCGGTGTTTCAGAGTCTTCAGCTCCCAGAAGAACCCCTCTCAAGAATATCAAGAAGAAACTCGACCGGAAAGAAAAGGCCAAGGCTTGGGTCAACACCGTCACTGAAGAATTCTCTACTTCCATCGAGAAAAAGCAATGGCTCCGAGCCCTTCAGGTGTTTGAAATGCTGAAAGAGCAGCCGTTTTATCAGCCAAAAGAAGGAACTTACATGAGGCTGCTGCTGCTGCTGGGGCGATCCGGCCAGCCGCAGCGTGCGCAGAGTCTTTTCGACGAGATGGTTGAGGAAGGGTGTCAGCCGACTGCTGAACTGTACACGGCGTTGCTTACAGCTTACTGTCGGAGCAATCTTATTCACGAGGCGTTTGGTGTACTTAACCAGATGAAAACGTTGGCGCAGTGCCAGCCGGATGTTTTTACTTACAGTACGTTGATAAAGGCGTGCATTGATAATTTGCAGTTTGAAATGGTGGAGTCGTTGTATGAGGAAATGGATACACGGTCGATTAGTCCAAACACAGTGACTCAAAATGTGGTGCTGAGTGGATATGGTAAGGCTGGGATGTATGACCAGATGGAGAGGGTGTTGTCGGGAATGCTGGAGGGTGAGAGTTGCAAGCCGGATGTTTGGACGATGAATGTTATCCTTACTATTTTTGGTAACAAGGGTCAGATAGAGATGATGGAGAGATGGTATCAGAAATTCCGTGATTTTGGGATTGAGCCAGAAACTCGCACTCTTAATATTCTGATTGGTGCTTATGGGAAGAAGAGAATGTATGATAAAATGTCAGCTGTGATGGAGTACATGCGAAAGCTTCACTTCCCCTGGACAACCGCAACTTACAACAATGTTATTGAGGCTTTTGCGGATGTGGGAGATGCAAAAAACATGGAATACACTTTTGATCAGATGCGTGCCGAGAACATGAAAGCAGACACGAAAACATTCTGCTGCCTTATAAATGGGTATGCCAATGCAGGTCTGTTCCATAAGGTGATTAGCAGTGTTCAGTTGGCTGGGAAGTTTGAGATACCCGAAAATACCACGTTTTATAATGCAGTCATATCTGCATGTGCAAAGGCAGATGATTTGATGGAAATGGAGAGAGTTTTTAACCGGATGAAAGAAAAGCAAATCTCGCCAGATTCCTCAACATATGCCGTCATGGTCGAGGCATATAGAAAGGAAGGTATGAACGACAAGATCTACTATTTGGAGCAGGAGATTAGTGCTGGTGGTATTCAAACCGATTAG

Protein Analysis

485

Amino Acids

55.17

Weight (kDa)

7.51

Isoelectric Point (pI)

50.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_3 PF13812 154 - 217 2e-09 Pentatricopeptide repeat domain
PPR_1 PF12854 163 - 195 1.3e-07 PPR repeat
PPR_2 PF13041 168 - 214 8.9e-13 PPR repeat family
PPR_2 PF13041 202 - 250 3.5e-11 PPR repeat family
PPR_3 PF13812 225 - 287 2.3e-06 Pentatricopeptide repeat domain
PPR_2 PF13041 237 - 283 7.1e-07 PPR repeat family
PPR_2 PF13041 273 - 321 1.6e-06 PPR repeat family
PPR_2 PF13041 345 - 392 1.5e-07 PPR repeat family
PPR_long PF17177 368 - 482 1.6e-06 Pentacotripeptide-repeat region of PRORP
PPR_2 PF13041 414 - 460 8.6e-11 PPR repeat family
PPR_3 PF13812 414 - 460 2.9e-07 Pentatricopeptide repeat domain
PPR PF01535 418 - 445 4.8e-06 PPR repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0016024)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G06430
fragaria_vesca FvH4_4g21400
malus_domestica MD13G1141500.v1.1 MD16G1137800.v1.1
prunus_persica Prupe.1G106700_v2.0.a1
pyrus_communis pycom13g12300 pycom16g12170
rosa_chinensis RchiOBHm_Chr4g0427331
rosa_multiflora Rmu_sc0008400.1_g000001
rosa_rugosa Rorug04G0216700
rosa_samantha Rh4AG273000 Rh4BG278700 Rh4CG294000 Rh4DG276100
rosa_wichuraiana Rw4G023690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1160, 1254
Acc16I TGCGCA 1 cut(s) 456
Acc36I ACCTGC 1 cut(s) 1169
AccB7I CCANNNNNTGG 1 cut(s) 285
AciI CCGC 3 cut(s) 446, 1035, 1067
AclI AACGTT 1 cut(s) 587
AclWI GGATC 1 cut(s) 429
AcoI YGGCCR 1 cut(s) 439
AcsI RAATTY 3 cut(s) 194, 308, 899
AcuI CTGAAG 3 cut(s) 201, 324, 335
AfaI GTAC 4 cut(s) 512, 570, 625, 1004
AfiI CCNNNNNNNGG 3 cut(s) 132, 285, 398
AgsI TTSAA 4 cut(s) 94, 362, 662, 1445
AjnI CCWGG 2 cut(s) 131, 1025
AluBI AGCT 4 cut(s) 221, 530, 992, 1015
AluI AGCT 4 cut(s) 221, 530, 992, 1015
Alw26I GTCTC 1 cut(s) 19
AlwI GGATC 1 cut(s) 429
AoxI GGCC 2 cut(s) 276, 439
ApeKI GCWGC 7 cut(s) 376, 415, 418, 421, 424, 448, 1152
ApoI RAATTY 3 cut(s) 194, 308, 899
Asp700I GAANNNNTTC 1 cut(s) 1145
AspLEI GCGC 3 cut(s) 110, 457, 595
AsuC2I CCSGG 1 cut(s) 201
AsuHPI GGTGA 3 cut(s) 129, 815, 1207
BanII GRGCYC 2 cut(s) 79, 349
BauI CACGAG 1 cut(s) 554
BbsI GAAGAC 1 cut(s) 207
BbvI GCAGC 7 cut(s) 388, 402, 405, 408, 411, 460, 1139
BccI CCATC 7 cut(s) 329, 469, 766, 874, 882, 991, 1288
BceAI ACGGC 3 cut(s) 364, 531, 1346
BciT130I CCWGG 2 cut(s) 133, 1027
BciVI GTATCC 1 cut(s) 685
BclI TGATCA 1 cut(s) 1105
BcnI CCSGG 1 cut(s) 201
BcoDI GTCTC 1 cut(s) 19
BfuAI ACCTGC 1 cut(s) 1169
BfuI GTATCC 1 cut(s) 685
BglII AGATCT 1 cut(s) 1404
BisI GCNGC 8 cut(s) 377, 416, 419, 422, 425, 446, 449, 1153
BlsI GCNGC 8 cut(s) 378, 417, 420, 423, 426, 447, 450, 1154
Bme1390I CCNGG 3 cut(s) 133, 201, 1027
BmiI GGNNCC 1 cut(s) 341
BmrFI CCNGG 3 cut(s) 133, 201, 1027
BmsI GCATC 2 cut(s) 1069, 1101
BpiI GAAGAC 1 cut(s) 207
BpmI CTGGAG 1 cut(s) 818
BpuEI CTTGAG 1 cut(s) 224
BpuMI CCSGG 1 cut(s) 201
BsaJI CCNNGG 3 cut(s) 199, 279, 1025
BsaWI WCCGGW 2 cut(s) 264, 1317
BsaXI ACNNNNNCTCC 6 cut(s) 662, 692, 767, 797, 875, 905
Bsc4I CCNNNNNNNGG 3 cut(s) 132, 285, 398
Bse1I ACTGG 1 cut(s) 185
Bse3DI GCAATG 1 cut(s) 341
BseBI CCWGG 2 cut(s) 133, 1027
BseDI CCNNGG 3 cut(s) 199, 279, 1025
BseGI GGATG 6 cut(s) 46, 613, 765, 826, 1075, 1326
BseLI CCNNNNNNNGG 3 cut(s) 132, 285, 398
BseMI GCAATG 1 cut(s) 341
BseMII CTCAG 2 cut(s) 176, 728
BseNI ACTGG 1 cut(s) 185
BseRI GAGGAG 1 cut(s) 145
BseXI GCAGC 7 cut(s) 388, 402, 405, 408, 411, 460, 1139
BseYI CCCAGC 3 cut(s) 427, 755, 1217
Bsh1285I CGRYCG 2 cut(s) 265, 701
BshFI GGCC 2 cut(s) 278, 441
BsiEI CGRYCG 2 cut(s) 265, 701
BsiSI CCGG 6 cut(s) 201, 265, 438, 605, 818, 1318
BslI CCNNNNNNNGG 3 cut(s) 132, 285, 398
BsmAI GTCTC 1 cut(s) 19
BsmI GAATGC 1 cut(s) 798
BsnI GGCC 2 cut(s) 278, 441
Bsp1286I GDGCHC 2 cut(s) 79, 349
Bsp1407I TGTACA 1 cut(s) 510
Bsp143I GATC 3 cut(s) 434, 1105, 1404
BspACI CCGC 3 cut(s) 446, 1035, 1067
BspANI GGCC 2 cut(s) 278, 441
BspCNI CTCAG 2 cut(s) 175, 729
BspLI GGNNCC 1 cut(s) 341
BspMI ACCTGC 1 cut(s) 1169
BspPI GGATC 1 cut(s) 429
BsrDI GCAATG 1 cut(s) 341
BsrGI TGTACA 1 cut(s) 510
BsrI ACTGG 1 cut(s) 185
BssECI CCNNGG 3 cut(s) 199, 279, 1025
BssMI GATC 3 cut(s) 434, 1105, 1404
BssSI CACGAG 1 cut(s) 554
BssT1I CCWWGG 1 cut(s) 279
Bst2BI CACGAG 1 cut(s) 554
Bst2UI CCWGG 2 cut(s) 133, 1027
Bst4CI ACNGT 6 cut(s) 298, 510, 536, 623, 699, 718
Bst6I CTCTTC 3 cut(s) 34, 163, 962
BstAUI TGTACA 1 cut(s) 510
BstC8I GCNNGC 6 cut(s) 443, 453, 602, 640, 815, 1116
BstDEI CTNAG 2 cut(s) 162, 737
BstEII GGTNACC 1 cut(s) 135
BstF5I GGATG 6 cut(s) 46, 613, 765, 826, 1075, 1326
BstHHI GCGC 3 cut(s) 110, 457, 595
BstKTI GATC 3 cut(s) 437, 1108, 1407
BstMAI GTCTC 1 cut(s) 19
BstMBI GATC 3 cut(s) 434, 1105, 1404
BstMCI CGRYCG 2 cut(s) 265, 701
BstMWI GCNNNNNNNGC 8 cut(s) 184, 373, 421, 424, 430, 454, 601, 1339
BstNI CCWGG 2 cut(s) 133, 1027
BstNSI RCATGY 2 cut(s) 1009, 1275
BstPI GGTNACC 1 cut(s) 135
BstSCI CCNGG 3 cut(s) 131, 199, 1025
BstV1I GCAGC 7 cut(s) 388, 402, 405, 408, 411, 460, 1139
BstV2I GAAGAC 1 cut(s) 207
BstX2I RGATCY 1 cut(s) 1404
BstYI RGATCY 1 cut(s) 1404
BsuI GTATCC 1 cut(s) 685
BsuRI GGCC 2 cut(s) 278, 441
BtsCI GGATG 6 cut(s) 46, 613, 765, 826, 1075, 1326
BtsI GCAGTG 3 cut(s) 103, 602, 1210
BtsIMutI CAGTG 6 cut(s) 103, 178, 300, 602, 723, 1210
BveI ACCTGC 1 cut(s) 1169
Cac8I GCNNGC 6 cut(s) 443, 453, 602, 640, 815, 1116
CfoI GCGC 3 cut(s) 110, 457, 595
CsiI ACCWGGT 1 cut(s) 131
Csp6I GTAC 4 cut(s) 511, 569, 624, 1003
CviAII CATG 6 cut(s) 409, 1006, 1090, 1126, 1272, 1366
CviQI GTAC 4 cut(s) 511, 569, 624, 1003
DdeI CTNAG 2 cut(s) 162, 737
DpnI GATC 3 cut(s) 436, 1107, 1406
DpnII GATC 3 cut(s) 434, 1105, 1404
EaeI YGGCCR 1 cut(s) 439
Eam1104I CTCTTC 3 cut(s) 34, 163, 962
EarI CTCTTC 3 cut(s) 34, 163, 962
Eco130I CCWWGG 1 cut(s) 279
Eco24I GRGCYC 2 cut(s) 79, 349
Eco57I CTGAAG 3 cut(s) 201, 324, 335
Eco91I GGTNACC 1 cut(s) 135
EcoO65I GGTNACC 1 cut(s) 135
EcoRI GAATTC 2 cut(s) 194, 308
EcoRII CCWGG 2 cut(s) 131, 1025
EcoT14I CCWWGG 1 cut(s) 279
EcoT38I GRGCYC 2 cut(s) 79, 349
ErhI CCWWGG 1 cut(s) 279
FaeI CATG 6 cut(s) 412, 1009, 1093, 1129, 1275, 1369
FalI AAGNNNNNCTT 2 cut(s) 1004, 1036
FatI CATG 6 cut(s) 408, 1005, 1089, 1125, 1271, 1365
FauNDI CATATG 1 cut(s) 1357
FbaI TGATCA 1 cut(s) 1105
Fnu4HI GCNGC 8 cut(s) 377, 416, 419, 422, 425, 446, 449, 1153
FokI GGATG 6 cut(s) 33, 620, 772, 833, 1082, 1333
FriOI GRGCYC 2 cut(s) 79, 349
Fsp4HI GCNGC 8 cut(s) 377, 416, 419, 422, 425, 446, 449, 1153
FspI TGCGCA 1 cut(s) 456
GlaI GCGC 3 cut(s) 109, 456, 594
GluI GCNGC 8 cut(s) 377, 416, 419, 422, 425, 446, 449, 1153
GsaI CCCAGC 3 cut(s) 431, 759, 1221
GsuI CTGGAG 1 cut(s) 818
HaeIII GGCC 2 cut(s) 278, 441
HapII CCGG 6 cut(s) 201, 265, 438, 605, 818, 1318
HhaI GCGC 3 cut(s) 110, 457, 595
Hin1II CATG 6 cut(s) 412, 1009, 1093, 1129, 1275, 1369
Hin6I GCGC 3 cut(s) 108, 455, 593
HinP1I GCGC 3 cut(s) 108, 455, 593
HincII GTYRAC 1 cut(s) 292
HindII GTYRAC 1 cut(s) 292
HindIII AAGCTT 1 cut(s) 1013
HinfI GANTC 5 cut(s) 212, 460, 671, 721, 1346
HpaII CCGG 6 cut(s) 201, 265, 438, 605, 818, 1318
HphI GGTGA 3 cut(s) 129, 815, 1207
Hpy166II GTNNAC 3 cut(s) 292, 513, 569
Hpy188I TCNGA 8 cut(s) 165, 211, 344, 540, 870, 897, 948, 1110
Hpy188III TCNNGA 5 cut(s) 241, 250, 325, 554, 789
Hpy8I GTNNAC 3 cut(s) 292, 513, 569
Hpy99I CGWCG 1 cut(s) 473
HpyAV CCTTC 6 cut(s) 132, 150, 359, 392, 479, 1382
HpyCH4III ACNGT 6 cut(s) 298, 510, 536, 623, 699, 718
HpyCH4IV ACGT 3 cut(s) 587, 626, 1247
HpyCH4V TGCA 8 cut(s) 642, 655, 813, 1082, 1178, 1259, 1271, 1277
HpyF10VI GCNNNNNNNGC 8 cut(s) 184, 373, 421, 424, 430, 454, 601, 1339
HpyF3I CTNAG 2 cut(s) 162, 737
HpySE526I ACGT 3 cut(s) 587, 626, 1247
Hsp92II CATG 6 cut(s) 412, 1009, 1093, 1129, 1275, 1369
HspAI GCGC 3 cut(s) 108, 455, 593
Ksp22I TGATCA 1 cut(s) 1105
Kzo9I GATC 3 cut(s) 434, 1105, 1404
LmnI GCTCC 5 cut(s) 158, 226, 345, 540, 1417
Lsp1109I GCAGC 7 cut(s) 388, 402, 405, 408, 411, 460, 1139
LweI GCATC 2 cut(s) 1069, 1101
MabI ACCWGGT 1 cut(s) 131
MaeII ACGT 3 cut(s) 587, 626, 1247
MaeIII GTNAC 4 cut(s) 135, 298, 718, 857
MalI GATC 3 cut(s) 436, 1107, 1406
MboI GATC 3 cut(s) 434, 1105, 1404
MflI RGATCY 1 cut(s) 1404
MhlI GDGCHC 2 cut(s) 79, 349
MluCI AATT 4 cut(s) 194, 308, 649, 899
MlyI GAGTC 4 cut(s) 221, 469, 680, 715
MmeI TCCRAC 1 cut(s) 518
MroXI GAANNNNTTC 1 cut(s) 1145
MseI TTAA 3 cut(s) 573, 939, 1314
MspA1I CMGCKG 1 cut(s) 992
MspI CCGG 6 cut(s) 201, 265, 438, 605, 818, 1318
MspR9I CCNGG 3 cut(s) 133, 201, 1027
Mva1269I GAATGC 1 cut(s) 798
MvaI CCWGG 2 cut(s) 133, 1027
MwoI GCNNNNNNNGC 8 cut(s) 184, 373, 421, 424, 430, 454, 601, 1339
NciI CCSGG 1 cut(s) 201
NdeI CATATG 1 cut(s) 1357
NdeII GATC 3 cut(s) 434, 1105, 1404
NlaIII CATG 6 cut(s) 412, 1009, 1093, 1129, 1275, 1369
NlaIV GGNNCC 1 cut(s) 341
NmeAIII GCCGAG 1 cut(s) 1144
NmuCI GTSAC 3 cut(s) 135, 298, 718
NsbI TGCGCA 1 cut(s) 456
NspI RCATGY 2 cut(s) 1009, 1275
PctI GAATGC 1 cut(s) 798
PdmI GAANNNNTTC 1 cut(s) 1145
PfeI GAWTC 1 cut(s) 1346
PflMI CCANNNNNTGG 1 cut(s) 285
PkrI GCNGC 8 cut(s) 378, 417, 420, 423, 426, 447, 450, 1154
PleI GAGTC 4 cut(s) 220, 468, 679, 715
PpsI GAGTC 4 cut(s) 220, 468, 679, 715
PsiI TTATAA 2 cut(s) 1160, 1254
Psp1406I AACGTT 1 cut(s) 587
Psp6I CCWGG 2 cut(s) 131, 1025
PspEI GGTNACC 1 cut(s) 135
PspFI CCCAGC 3 cut(s) 427, 755, 1217
PspGI CCWGG 2 cut(s) 131, 1025
PspN4I GGNNCC 1 cut(s) 341
PsuI RGATCY 1 cut(s) 1404
PvuII CAGCTG 1 cut(s) 992
RsaI GTAC 4 cut(s) 512, 570, 625, 1004
RsaNI GTAC 4 cut(s) 511, 569, 624, 1003
SaqAI TTAA 3 cut(s) 573, 939, 1314
SatI GCNGC 8 cut(s) 377, 416, 419, 422, 425, 446, 449, 1153
Sau3AI GATC 3 cut(s) 434, 1105, 1404
SchI GAGTC 4 cut(s) 221, 469, 680, 715
ScrFI CCNGG 3 cut(s) 133, 201, 1027
SduI GDGCHC 2 cut(s) 79, 349
SexAI ACCWGGT 1 cut(s) 131
SfaNI GCATC 2 cut(s) 1069, 1101
SmlI CTYRAG 1 cut(s) 239
SmoI CTYRAG 1 cut(s) 239
Sse9I AATT 4 cut(s) 194, 308, 649, 899
SsiI CCGC 3 cut(s) 446, 1035, 1067
SspI AATATT 1 cut(s) 943
StyD4I CCNGG 3 cut(s) 131, 199, 1025
StyI CCWWGG 1 cut(s) 279
TaaI ACNGT 6 cut(s) 298, 510, 536, 623, 699, 718
TaiI ACGT 3 cut(s) 590, 629, 1250
TaqI TCGA 5 cut(s) 261, 324, 468, 701, 1371
TasI AATT 4 cut(s) 194, 308, 649, 899
TatI WGTACW 3 cut(s) 510, 568, 1002
TauI GCSGC 1 cut(s) 448
TfiI GAWTC 1 cut(s) 1346
Tru1I TTAA 3 cut(s) 573, 939, 1314
Tru9I TTAA 3 cut(s) 573, 939, 1314
TscAI CASTG 6 cut(s) 110, 185, 307, 602, 723, 1210
TseFI GTSAC 3 cut(s) 135, 298, 718
TseI GCWGC 7 cut(s) 376, 415, 418, 421, 424, 448, 1152
Tsp45I GTSAC 3 cut(s) 135, 298, 718
TspDTI ATGAA 5 cut(s) 596, 848, 1142, 1337, 1409
TspGWI ACGGA 1 cut(s) 893
TspRI CASTG 6 cut(s) 110, 185, 307, 602, 723, 1210
Van91I CCANNNNNTGG 1 cut(s) 285
XapI RAATTY 3 cut(s) 194, 308, 899
XceI RCATGY 2 cut(s) 1009, 1275
XmnI GAANNNNTTC 1 cut(s) 1145
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.