AT3G06610

Huntingtin-interacting protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0015094
Physical Location & Seq
Forward (+)
2060615 .. 2062153
1539 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G06610.1

Sequence Viewer

Length: 348 bp
ATGGAGGGAGCAGAGGAAGCTGGGGCTGAGATAGCGGTTGATTCAAAGGACTTGCAGCAACAAAGCAAAGCTTTCGACAAGCTCACCGATCGTGTCGAGGATCGCCAGCTCGATTCCTCTCGTGTTCAATCGGCTATGGCTTCGATTGCTGCTTCTAGGGAGGCTGATCTGAATGCTAAGAGGTTGAGGGAGAAAGAACTGGCCTCTGTGAAGATCAATCCTGCAGATGTTGAGTTTATTGTAAACGAACTTGAGATAGAAAAGAATGTGGCGGAAAGAACTCTAAGGGAGCACAAAGGTGATGCGGTTGCTGCGACTAGGCAATTGCTTTCACGATATCCTCTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

115

Amino Acids

12.8

Weight (kDa)

4.99

Isoelectric Point (pI)

50.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UBA_HYPK PF19026 70 - 110 7.5e-18 HYPK UBA domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015094)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G06610
fragaria_vesca FvH4_4g19820
malus_domestica MD13G1153200.v1.1 MD16G1153600.v1.1
prunus_persica Prupe.1G116800_v2.0.a1
pyrus_communis pycom16g13040
rosa_chinensis RchiOBHm_Chr4g0425361
rosa_laevigata RLG00000007373
rosa_multiflora Rmu_sc0001900.1_g000049
rosa_roxburghii Rroxscaffold_5G00367350
rosa_rugosa Rorug04G0202500
rosa_samantha Rh4AG259700 Rh4BG265600 Rh4CG276900 Rh4DG261600
rosa_wichuraiana Rw4G022480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 35, 272, 305
AclWI GGATC 1 cut(s) 108
AgsI TTSAA 2 cut(s) 45, 128
AleI CACNNNNGTG 1 cut(s) 297
AluBI AGCT 4 cut(s) 20, 71, 82, 109
AluI AGCT 4 cut(s) 20, 71, 82, 109
Alw21I GWGCWC 1 cut(s) 294
AlwI GGATC 1 cut(s) 108
AoxI GGCC 1 cut(s) 201
ApeKI GCWGC 3 cut(s) 55, 149, 311
AsuHPI GGTGA 2 cut(s) 76, 311
BauI CACGAG 1 cut(s) 120
Bbv12I GWGCWC 1 cut(s) 294
BbvI GCAGC 3 cut(s) 67, 136, 298
BcgI CGANNNNNNTGC 2 cut(s) 55, 89
BfaI CTAG 2 cut(s) 156, 318
BfmI CTRYAG 1 cut(s) 222
BisI GCNGC 3 cut(s) 56, 150, 312
BlsI GCNGC 3 cut(s) 57, 151, 313
BmsI GCATC 1 cut(s) 292
BpuEI CTTGAG 1 cut(s) 272
Bse1I ACTGG 1 cut(s) 204
BseMII CTCAG 1 cut(s) 18
BseNI ACTGG 1 cut(s) 204
BseXI GCAGC 3 cut(s) 67, 136, 298
BseYI CCCAGC 1 cut(s) 20
Bsh1285I CGRYCG 1 cut(s) 91
BshFI GGCC 1 cut(s) 203
BsiEI CGRYCG 1 cut(s) 91
BsiHKAI GWGCWC 1 cut(s) 294
BsmI GAATGC 1 cut(s) 178
BsnI GGCC 1 cut(s) 203
Bsp1286I GDGCHC 1 cut(s) 294
Bsp143I GATC 4 cut(s) 88, 100, 166, 213
BspACI CCGC 3 cut(s) 35, 272, 305
BspANI GGCC 1 cut(s) 203
BspCNI CTCAG 1 cut(s) 19
BspMAI CTGCAG 1 cut(s) 226
BspPI GGATC 1 cut(s) 108
BsrI ACTGG 1 cut(s) 204
BssMI GATC 4 cut(s) 88, 100, 166, 213
BssSI CACGAG 1 cut(s) 120
Bst2BI CACGAG 1 cut(s) 120
BstC8I GCNNGC 1 cut(s) 107
BstDEI CTNAG 3 cut(s) 27, 177, 284
BstKTI GATC 4 cut(s) 91, 103, 169, 216
BstMBI GATC 4 cut(s) 88, 100, 166, 213
BstMCI CGRYCG 1 cut(s) 91
BstMWI GCNNNNNNNGC 4 cut(s) 17, 32, 146, 311
BstSFI CTRYAG 1 cut(s) 222
BstV1I GCAGC 3 cut(s) 67, 136, 298
BsuRI GGCC 1 cut(s) 203
Cac8I GCNNGC 1 cut(s) 107
CviJI RGCY 9 cut(s) 20, 26, 71, 82, 109, 134, 140, 164, 203
CviKI_1 RGCY 9 cut(s) 20, 26, 71, 82, 109, 134, 140, 164, 203
DdeI CTNAG 3 cut(s) 27, 177, 284
DpnI GATC 4 cut(s) 90, 102, 168, 215
DpnII GATC 4 cut(s) 88, 100, 166, 213
EciI GGCGGA 1 cut(s) 287
Eco32I GATATC 1 cut(s) 338
EcoRV GATATC 1 cut(s) 338
FaiI YATR 2 cut(s) 137, 346
FalI AAGNNNNNCTT 2 cut(s) 55, 87
Fnu4HI GCNGC 3 cut(s) 56, 150, 312
Fsp4HI GCNGC 3 cut(s) 56, 150, 312
FspBI CTAG 2 cut(s) 156, 318
GluI GCNGC 3 cut(s) 56, 150, 312
GsaI CCCAGC 1 cut(s) 24
HaeIII GGCC 1 cut(s) 203
HindIII AAGCTT 1 cut(s) 69
HinfI GANTC 2 cut(s) 41, 113
HphI GGTGA 2 cut(s) 76, 311
Hpy166II GTNNAC 1 cut(s) 244
Hpy188I TCNGA 1 cut(s) 171
Hpy188III TCNNGA 1 cut(s) 333
Hpy8I GTNNAC 1 cut(s) 244
HpyCH4V TGCA 2 cut(s) 55, 224
HpyF10VI GCNNNNNNNGC 4 cut(s) 17, 32, 146, 311
HpyF3I CTNAG 3 cut(s) 27, 177, 284
Kzo9I GATC 4 cut(s) 88, 100, 166, 213
LmnI GCTCC 2 cut(s) 8, 289
LpnPI CCDG 4 cut(s) 6, 119, 185, 234
Lsp1109I GCAGC 3 cut(s) 67, 136, 298
LweI GCATC 1 cut(s) 292
MaeI CTAG 2 cut(s) 156, 318
MalI GATC 4 cut(s) 90, 102, 168, 215
MboI GATC 4 cut(s) 88, 100, 166, 213
MboII GAAGA 1 cut(s) 223
MfeI CAATTG 1 cut(s) 323
MhlI GDGCHC 1 cut(s) 294
MluCI AATT 1 cut(s) 323
MnlI CCTC 7 cut(s) 7, 91, 127, 154, 174, 180, 214
MslI CAYNNNNRTG 1 cut(s) 297
MunI CAATTG 1 cut(s) 323
Mva1269I GAATGC 1 cut(s) 178
MwoI GCNNNNNNNGC 4 cut(s) 17, 32, 146, 311
NdeII GATC 4 cut(s) 88, 100, 166, 213
OliI CACNNNNGTG 1 cut(s) 297
PctI GAATGC 1 cut(s) 178
PfeI GAWTC 2 cut(s) 41, 113
PkrI GCNGC 3 cut(s) 57, 151, 313
Ple19I CGATCG 1 cut(s) 91
PspFI CCCAGC 1 cut(s) 20
PstI CTGCAG 1 cut(s) 226
PvuI CGATCG 1 cut(s) 91
RseI CAYNNNNRTG 1 cut(s) 297
SatI GCNGC 3 cut(s) 56, 150, 312
Sau3AI GATC 4 cut(s) 88, 100, 166, 213
SduI GDGCHC 1 cut(s) 294
SetI ASST 6 cut(s) 22, 73, 84, 111, 185, 301
SfaNI GCATC 1 cut(s) 292
SfcI CTRYAG 1 cut(s) 222
SmiMI CAYNNNNRTG 1 cut(s) 297
SmlI CTYRAG 1 cut(s) 251
SmoI CTYRAG 1 cut(s) 251
Sse9I AATT 1 cut(s) 323
SsiI CCGC 3 cut(s) 35, 272, 305
SspMI CTAG 2 cut(s) 156, 318
TaqI TCGA 4 cut(s) 75, 96, 111, 143
TasI AATT 1 cut(s) 323
TfiI GAWTC 2 cut(s) 41, 113
TseI GCWGC 3 cut(s) 55, 149, 311
XspI CTAG 2 cut(s) 156, 318
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.