Rh4BG265600

Huntingtin-interacting protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0015094
Physical Location & Seq
Reverse (-)
43938044 .. 43941898
3855 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG265600.1

Sequence Viewer

Length: 336 bp
ATGGAGGGCGCAGGAGAAGAAGGAATTGATAGGATCGAGGACTCGAAGGACTTGCAGCAACAGAGCAAAGCCTTCGATAAGCTCACTGACCGCGTCGAAGATCGCCAGCTCGACTCCACCCGAGTCCAGGAGGCCATGGCTTCCATCGCTGCCACCTCAGAAGCCGATTTGGAAGCTATGAGAAAGAGGGAGAAAGAATTGGCTACTGTGAAGATCAATCCACGCGACGTTGAGATAATTGCAAATGAACTAGAGCTGGACAAGTTGGTTGCTGAGAGGACCTTGAGGGAGCACAAAGGTGATGCTGTTGCTGCCATTAGGCACTTGCTTCACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

111

Amino Acids

12.52

Weight (kDa)

4.91

Isoelectric Point (pI)

39.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UBA_HYPK PF19026 70 - 110 2.2e-17 HYPK UBA domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015094)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G06610
fragaria_vesca FvH4_4g19820
malus_domestica MD13G1153200.v1.1 MD16G1153600.v1.1
prunus_persica Prupe.1G116800_v2.0.a1
pyrus_communis pycom16g13040
rosa_chinensis RchiOBHm_Chr4g0425361
rosa_laevigata RLG00000007373
rosa_multiflora Rmu_sc0001900.1_g000049
rosa_roxburghii Rroxscaffold_5G00367350
rosa_rugosa Rorug04G0202500
rosa_samantha Rh4AG259700 Rh4BG265600 Rh4CG276900 Rh4DG261600
rosa_wichuraiana Rw4G022480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 93, 225
AciI CCGC 1 cut(s) 91
AclWI GGATC 1 cut(s) 41
AfiI CCNNNNNNNGG 1 cut(s) 127
AjnI CCWGG 1 cut(s) 126
AleI CACNNNNGTG 1 cut(s) 297
AluBI AGCT 4 cut(s) 82, 109, 176, 256
AluI AGCT 4 cut(s) 82, 109, 176, 256
Alw21I GWGCWC 1 cut(s) 294
AlwI GGATC 1 cut(s) 41
Ama87I CYCGRG 1 cut(s) 120
AoxI GGCC 1 cut(s) 132
ApeKI GCWGC 3 cut(s) 55, 149, 311
AspLEI GCGC 1 cut(s) 11
AspS9I GGNCC 1 cut(s) 279
AsuHPI GGTGA 1 cut(s) 311
AvaI CYCGRG 1 cut(s) 120
AvaII GGWCC 1 cut(s) 279
Bbv12I GWGCWC 1 cut(s) 294
BbvI GCAGC 3 cut(s) 67, 136, 298
BccI CCATC 1 cut(s) 152
BcgI CGANNNNNNTGC 4 cut(s) 34, 55, 68, 89
BciT130I CCWGG 1 cut(s) 128
BfaI CTAG 2 cut(s) 251, 334
BisI GCNGC 3 cut(s) 56, 150, 312
BlsI GCNGC 3 cut(s) 57, 151, 313
Bme1390I CCNGG 1 cut(s) 128
Bme18I GGWCC 1 cut(s) 279
BmeT110I CYCGRG 1 cut(s) 120
BmgT120I GGNCC 1 cut(s) 279
BmrFI CCNGG 1 cut(s) 128
BmsI GCATC 1 cut(s) 292
BpuEI CTTGAG 1 cut(s) 304
BsaJI CCNNGG 1 cut(s) 135
Bsc4I CCNNNNNNNGG 1 cut(s) 127
BseBI CCWGG 1 cut(s) 128
BseDI CCNNGG 1 cut(s) 135
BseLI CCNNNNNNNGG 1 cut(s) 127
BseMII CTCAG 2 cut(s) 171, 264
BseXI GCAGC 3 cut(s) 67, 136, 298
Bsh1236I CGCG 2 cut(s) 93, 225
BshFI GGCC 1 cut(s) 134
BsiHKAI GWGCWC 1 cut(s) 294
BsiHKCI CYCGRG 1 cut(s) 120
BslI CCNNNNNNNGG 1 cut(s) 127
BsnI GGCC 1 cut(s) 134
BsoBI CYCGRG 1 cut(s) 120
Bsp1286I GDGCHC 1 cut(s) 294
Bsp143I GATC 3 cut(s) 33, 100, 213
Bsp19I CCATGG 1 cut(s) 135
BspACI CCGC 1 cut(s) 91
BspANI GGCC 1 cut(s) 134
BspCNI CTCAG 2 cut(s) 170, 265
BspFNI CGCG 2 cut(s) 93, 225
BspPI GGATC 1 cut(s) 41
BssECI CCNNGG 1 cut(s) 135
BssMI GATC 3 cut(s) 33, 100, 213
BssT1I CCWWGG 1 cut(s) 135
Bst2UI CCWGG 1 cut(s) 128
Bst4CI ACNGT 1 cut(s) 208
BstC8I GCNNGC 1 cut(s) 107
BstDEI CTNAG 2 cut(s) 157, 273
BstDSI CCRYGG 1 cut(s) 135
BstFNI CGCG 2 cut(s) 93, 225
BstHHI GCGC 1 cut(s) 11
BstKTI GATC 3 cut(s) 36, 103, 216
BstMBI GATC 3 cut(s) 33, 100, 213
BstMWI GCNNNNNNNGC 2 cut(s) 146, 311
BstNI CCWGG 1 cut(s) 128
BstSCI CCNGG 1 cut(s) 126
BstUI CGCG 2 cut(s) 93, 225
BstV1I GCAGC 3 cut(s) 67, 136, 298
BsuRI GGCC 1 cut(s) 134
BtgI CCRYGG 1 cut(s) 135
BtgZI GCGATG 1 cut(s) 130
BtsIMutI CAGTG 1 cut(s) 84
Cac8I GCNNGC 1 cut(s) 107
CfoI GCGC 1 cut(s) 11
Cfr13I GGNCC 1 cut(s) 279
CseI GACGC 1 cut(s) 82
CviAII CATG 1 cut(s) 136
CviJI RGCY 9 cut(s) 71, 82, 109, 134, 140, 164, 176, 203, 256
CviKI_1 RGCY 9 cut(s) 71, 82, 109, 134, 140, 164, 176, 203, 256
DdeI CTNAG 2 cut(s) 157, 273
DpnI GATC 3 cut(s) 35, 102, 215
DpnII GATC 3 cut(s) 33, 100, 213
Eco130I CCWWGG 1 cut(s) 135
Eco47I GGWCC 1 cut(s) 279
Eco88I CYCGRG 1 cut(s) 120
EcoO109I RGGNCCY 1 cut(s) 279
EcoRII CCWGG 1 cut(s) 126
EcoT14I CCWWGG 1 cut(s) 135
ErhI CCWWGG 1 cut(s) 135
FaeI CATG 1 cut(s) 139
FaiI YATR 2 cut(s) 137, 179
FatI CATG 1 cut(s) 135
Fnu4HI GCNGC 3 cut(s) 56, 150, 312
Fsp4HI GCNGC 3 cut(s) 56, 150, 312
FspBI CTAG 2 cut(s) 251, 334
GlaI GCGC 1 cut(s) 10
GluI GCNGC 3 cut(s) 56, 150, 312
HaeIII GGCC 1 cut(s) 134
HgaI GACGC 1 cut(s) 82
HhaI GCGC 1 cut(s) 11
Hin1II CATG 1 cut(s) 139
Hin6I GCGC 1 cut(s) 9
HinP1I GCGC 1 cut(s) 9
HinfI GANTC 3 cut(s) 41, 113, 123
HphI GGTGA 1 cut(s) 311
Hpy188I TCNGA 1 cut(s) 160
Hpy99I CGWCG 2 cut(s) 98, 230
HpyAV CCTTC 3 cut(s) 14, 40, 82
HpyCH4III ACNGT 1 cut(s) 208
HpyCH4IV ACGT 1 cut(s) 228
HpyCH4V TGCA 2 cut(s) 55, 242
HpyF10VI GCNNNNNNNGC 2 cut(s) 146, 311
HpyF3I CTNAG 2 cut(s) 157, 273
HpySE526I ACGT 1 cut(s) 228
Hsp92II CATG 1 cut(s) 139
HspAI GCGC 1 cut(s) 9
Kzo9I GATC 3 cut(s) 33, 100, 213
LmnI GCTCC 1 cut(s) 289
LpnPI CCDG 4 cut(s) 113, 119, 140, 242
Lsp1109I GCAGC 3 cut(s) 67, 136, 298
LweI GCATC 1 cut(s) 292
MaeI CTAG 2 cut(s) 251, 334
MaeII ACGT 1 cut(s) 228
MalI GATC 3 cut(s) 35, 102, 215
MboI GATC 3 cut(s) 33, 100, 213
MboII GAAGA 3 cut(s) 29, 110, 223
MhlI GDGCHC 1 cut(s) 294
MluCI AATT 3 cut(s) 24, 197, 237
MlyI GAGTC 3 cut(s) 35, 107, 132
MnlI CCTC 6 cut(s) 31, 124, 166, 180, 270, 279
MslI CAYNNNNRTG 1 cut(s) 297
MspR9I CCNGG 1 cut(s) 128
MvaI CCWGG 1 cut(s) 128
MvnI CGCG 2 cut(s) 93, 225
MwoI GCNNNNNNNGC 2 cut(s) 146, 311
NcoI CCATGG 1 cut(s) 135
NdeII GATC 3 cut(s) 33, 100, 213
NlaIII CATG 1 cut(s) 139
OliI CACNNNNGTG 1 cut(s) 297
PflFI GACNNNGTC 1 cut(s) 92
PfoI TCCNGGA 1 cut(s) 126
PkrI GCNGC 3 cut(s) 57, 151, 313
PleI GAGTC 3 cut(s) 35, 107, 131
PpsI GAGTC 3 cut(s) 35, 107, 131
PpuMI RGGWCCY 1 cut(s) 279
Psp5II RGGWCCY 1 cut(s) 279
Psp6I CCWGG 1 cut(s) 126
PspGI CCWGG 1 cut(s) 126
PspPI GGNCC 1 cut(s) 279
PspPPI RGGWCCY 1 cut(s) 279
PsyI GACNNNGTC 1 cut(s) 92
RseI CAYNNNNRTG 1 cut(s) 297
SatI GCNGC 3 cut(s) 56, 150, 312
Sau3AI GATC 3 cut(s) 33, 100, 213
Sau96I GGNCC 1 cut(s) 279
SchI GAGTC 3 cut(s) 35, 107, 132
ScrFI CCNGG 1 cut(s) 128
SduI GDGCHC 1 cut(s) 294
SetI ASST 8 cut(s) 84, 111, 158, 178, 231, 258, 284, 301
SfaNI GCATC 1 cut(s) 292
SinI GGWCC 1 cut(s) 279
SmiMI CAYNNNNRTG 1 cut(s) 297
SmlI CTYRAG 1 cut(s) 283
SmoI CTYRAG 1 cut(s) 283
Sse9I AATT 3 cut(s) 24, 197, 237
SsiI CCGC 1 cut(s) 91
SspMI CTAG 2 cut(s) 251, 334
StyD4I CCNGG 1 cut(s) 126
StyI CCWWGG 1 cut(s) 135
TaaI ACNGT 1 cut(s) 208
TaiI ACGT 1 cut(s) 231
TaqI TCGA 5 cut(s) 36, 44, 75, 96, 111
TasI AATT 3 cut(s) 24, 197, 237
TscAI CASTG 1 cut(s) 91
TseI GCWGC 3 cut(s) 55, 149, 311
TspDTI ATGAA 1 cut(s) 261
TspRI CASTG 1 cut(s) 91
Tth111I GACNNNGTC 1 cut(s) 92
VpaK11BI GGWCC 1 cut(s) 279
XspI CTAG 2 cut(s) 251, 334
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.