MD13G1153200.v1.1

Huntingtin-interacting protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
OG0015094
Physical Location & Seq
Forward (+)
12006846 .. 12009414
2569 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1153200.v1.1.491

Sequence Viewer

Length: 333 bp
ATGGAGGGAGGTGGAGAAGGAGTAGAGATGGTGGTGGACTCCAAGGACTTGCAGCAGCAGAGCAAAGCCTTCGATAAGCTCACCGACCGCGTCGAAGATCGCCAGCTCAATTCCACCCGCGTCCAGGAGGCCATGGCTTCCATCGCCGCCTCCTCCGAAGCCGATAGGAATGCTATGCGATTGAGGGAGAAGGAATTGGCTGCTGTGAAGATCAATGCAGGCGATGTAGACATAATCGCAAATGAACTAGAGTTGGACAAGAAGGTAGCTGAGAGGACTTTGCGGGAGCACAAAGGTGATGCCGTTGCTGCCATTCGACACTTGCTTCGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

111

Amino Acids

12.17

Weight (kDa)

5.24

Isoelectric Point (pI)

33.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UBA_HYPK PF19026 69 - 109 1.2e-17 HYPK UBA domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015094)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G06610
fragaria_vesca FvH4_4g19820
malus_domestica MD13G1153200.v1.1 MD16G1153600.v1.1
prunus_persica Prupe.1G116800_v2.0.a1
pyrus_communis pycom16g13040
rosa_chinensis RchiOBHm_Chr4g0425361
rosa_laevigata RLG00000007373
rosa_multiflora Rmu_sc0001900.1_g000049
rosa_roxburghii Rroxscaffold_5G00367350
rosa_rugosa Rorug04G0202500
rosa_samantha Rh4AG259700 Rh4BG265600 Rh4CG276900 Rh4DG261600
rosa_wichuraiana Rw4G022480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 228
AccII CGCG 2 cut(s) 90, 120
AciI CCGC 4 cut(s) 88, 118, 147, 283
AfiI CCNNNNNNNGG 1 cut(s) 124
AjnI CCWGG 1 cut(s) 123
AleI CACNNNNGTG 1 cut(s) 294
AluBI AGCT 3 cut(s) 79, 106, 269
AluI AGCT 3 cut(s) 79, 106, 269
Alw21I GWGCWC 1 cut(s) 291
AoxI GGCC 1 cut(s) 129
ApeKI GCWGC 4 cut(s) 52, 55, 200, 308
ArsI GACNNNNNNTTYG 1 cut(s) 309
AsuHPI GGTGA 2 cut(s) 73, 308
Bbv12I GWGCWC 1 cut(s) 291
BbvI GCAGC 4 cut(s) 64, 67, 187, 295
BccI CCATC 2 cut(s) 22, 149
BceAI ACGGC 1 cut(s) 287
BcgI CGANNNNNNTGC 4 cut(s) 52, 86, 152, 186
BciT130I CCWGG 1 cut(s) 125
BfaI CTAG 2 cut(s) 248, 331
BisI GCNGC 5 cut(s) 53, 56, 147, 201, 309
BlsI GCNGC 5 cut(s) 54, 57, 148, 202, 310
Bme1390I CCNGG 1 cut(s) 125
BmrFI CCNGG 1 cut(s) 125
BmsI GCATC 1 cut(s) 289
BsaJI CCNNGG 2 cut(s) 42, 132
BsaXI ACNNNNNCTCC 2 cut(s) 6, 36
Bsc4I CCNNNNNNNGG 1 cut(s) 124
BseBI CCWGG 1 cut(s) 125
BseDI CCNNGG 2 cut(s) 42, 132
BseLI CCNNNNNNNGG 1 cut(s) 124
BseMII CTCAG 1 cut(s) 261
BseRI GAGGAG 1 cut(s) 142
BseXI GCAGC 4 cut(s) 64, 67, 187, 295
Bsh1236I CGCG 2 cut(s) 90, 120
Bsh1285I CGRYCG 1 cut(s) 88
BshFI GGCC 1 cut(s) 131
BsiEI CGRYCG 1 cut(s) 88
BsiHKAI GWGCWC 1 cut(s) 291
BslI CCNNNNNNNGG 1 cut(s) 124
BsmI GAATGC 1 cut(s) 175
BsnI GGCC 1 cut(s) 131
Bsp1286I GDGCHC 1 cut(s) 291
Bsp143I GATC 2 cut(s) 97, 210
Bsp19I CCATGG 1 cut(s) 132
BspACI CCGC 4 cut(s) 88, 118, 147, 283
BspANI GGCC 1 cut(s) 131
BspCNI CTCAG 1 cut(s) 262
BspFNI CGCG 2 cut(s) 90, 120
BssECI CCNNGG 2 cut(s) 42, 132
BssMI GATC 2 cut(s) 97, 210
BssT1I CCWWGG 2 cut(s) 42, 132
Bst2UI CCWGG 1 cut(s) 125
BstC8I GCNNGC 2 cut(s) 104, 220
BstDEI CTNAG 1 cut(s) 270
BstDSI CCRYGG 1 cut(s) 132
BstFNI CGCG 2 cut(s) 90, 120
BstKTI GATC 2 cut(s) 100, 213
BstMBI GATC 2 cut(s) 97, 210
BstMCI CGRYCG 1 cut(s) 88
BstMWI GCNNNNNNNGC 2 cut(s) 143, 308
BstNI CCWGG 1 cut(s) 125
BstSCI CCNGG 1 cut(s) 123
BstUI CGCG 2 cut(s) 90, 120
BstV1I GCAGC 4 cut(s) 64, 67, 187, 295
BsuRI GGCC 1 cut(s) 131
BtgI CCRYGG 1 cut(s) 132
BtgZI GCGATG 2 cut(s) 127, 237
Cac8I GCNNGC 2 cut(s) 104, 220
CseI GACGC 2 cut(s) 79, 109
CviAII CATG 1 cut(s) 133
CviJI RGCY 8 cut(s) 68, 79, 106, 131, 137, 161, 200, 269
CviKI_1 RGCY 8 cut(s) 68, 79, 106, 131, 137, 161, 200, 269
DdeI CTNAG 1 cut(s) 270
DpnI GATC 2 cut(s) 99, 212
DpnII GATC 2 cut(s) 97, 210
Eco130I CCWWGG 2 cut(s) 42, 132
EcoRII CCWGG 1 cut(s) 123
EcoT14I CCWWGG 2 cut(s) 42, 132
ErhI CCWWGG 2 cut(s) 42, 132
FaeI CATG 1 cut(s) 136
FaiI YATR 3 cut(s) 134, 176, 233
FatI CATG 1 cut(s) 132
FauI CCCGC 2 cut(s) 125, 276
FblI GTMKAC 1 cut(s) 228
Fnu4HI GCNGC 5 cut(s) 53, 56, 147, 201, 309
Fsp4HI GCNGC 5 cut(s) 53, 56, 147, 201, 309
FspBI CTAG 2 cut(s) 248, 331
GluI GCNGC 5 cut(s) 53, 56, 147, 201, 309
HaeIII GGCC 1 cut(s) 131
HgaI GACGC 2 cut(s) 79, 109
Hin1II CATG 1 cut(s) 136
HinfI GANTC 1 cut(s) 38
HphI GGTGA 2 cut(s) 73, 308
Hpy166II GTNNAC 2 cut(s) 37, 229
Hpy188I TCNGA 1 cut(s) 157
Hpy8I GTNNAC 2 cut(s) 37, 229
Hpy99I CGWCG 1 cut(s) 95
HpyAV CCTTC 4 cut(s) 11, 79, 184, 256
HpyCH4V TGCA 2 cut(s) 52, 218
HpyF10VI GCNNNNNNNGC 2 cut(s) 143, 308
HpyF3I CTNAG 1 cut(s) 270
Hsp92II CATG 1 cut(s) 136
Kzo9I GATC 2 cut(s) 97, 210
LmnI GCTCC 1 cut(s) 286
LpnPI CCDG 4 cut(s) 110, 116, 137, 204
Lsp1109I GCAGC 4 cut(s) 64, 67, 187, 295
LweI GCATC 1 cut(s) 289
MaeI CTAG 2 cut(s) 248, 331
MalI GATC 2 cut(s) 99, 212
MboI GATC 2 cut(s) 97, 210
MboII GAAGA 2 cut(s) 107, 220
MhlI GDGCHC 1 cut(s) 291
MluCI AATT 2 cut(s) 109, 194
MlyI GAGTC 1 cut(s) 32
MmeI TCCRAC 1 cut(s) 234
MnlI CCTC 5 cut(s) 121, 160, 163, 177, 267
MslI CAYNNNNRTG 1 cut(s) 294
MspR9I CCNGG 1 cut(s) 125
Mva1269I GAATGC 1 cut(s) 175
MvaI CCWGG 1 cut(s) 125
MvnI CGCG 2 cut(s) 90, 120
MwoI GCNNNNNNNGC 2 cut(s) 143, 308
NcoI CCATGG 1 cut(s) 132
NdeII GATC 2 cut(s) 97, 210
NlaIII CATG 1 cut(s) 136
OliI CACNNNNGTG 1 cut(s) 294
PctI GAATGC 1 cut(s) 175
PflFI GACNNNGTC 1 cut(s) 89
PfoI TCCNGGA 1 cut(s) 123
PkrI GCNGC 5 cut(s) 54, 57, 148, 202, 310
PleI GAGTC 1 cut(s) 32
PpsI GAGTC 1 cut(s) 32
Psp6I CCWGG 1 cut(s) 123
PspGI CCWGG 1 cut(s) 123
PsyI GACNNNGTC 1 cut(s) 89
RseI CAYNNNNRTG 1 cut(s) 294
SatI GCNGC 5 cut(s) 53, 56, 147, 201, 309
Sau3AI GATC 2 cut(s) 97, 210
SchI GAGTC 1 cut(s) 32
ScrFI CCNGG 1 cut(s) 125
SduI GDGCHC 1 cut(s) 291
SetI ASST 6 cut(s) 13, 81, 108, 267, 271, 298
SfaNI GCATC 1 cut(s) 289
SmiMI CAYNNNNRTG 1 cut(s) 294
Sse9I AATT 2 cut(s) 109, 194
SsiI CCGC 4 cut(s) 88, 118, 147, 283
SspMI CTAG 2 cut(s) 248, 331
StyD4I CCNGG 1 cut(s) 123
StyI CCWWGG 2 cut(s) 42, 132
TaqI TCGA 3 cut(s) 72, 93, 316
TasI AATT 2 cut(s) 109, 194
TauI GCSGC 1 cut(s) 149
TseI GCWGC 4 cut(s) 52, 55, 200, 308
TspDTI ATGAA 1 cut(s) 258
Tth111I GACNNNGTC 1 cut(s) 89
XmiI GTMKAC 1 cut(s) 228
XspI CTAG 2 cut(s) 248, 331
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.