Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0015094

Physical Location & Seq

Genomic Coordinates Forward (+)

35162370 .. 35162832

Gene Structure 463 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0202500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGATCAAAAATGCATATGAAAAGGAGTCTGAGGGTCCAAAGCTTGGTAGGGTTCAGAAGAGTTTGAAGTGTAGCAACTGTGGCATACTGGGTCATAGTGTGAAGACCTGTCATAGACACCTTCCACCCAAGGAAAAGGCAGCTAAGAGGAGGAAACTGAACACAGGAGAGGTATCATCAACTCATACTCAAACTCAGGCCAAGGGTAGCAAAAAGCAGCCAAAGACCAAAAATGAGACCAAGCTGCAGGCCAAGGTCAGACCTCCAAAAGCTCCTTCAAGCAAGGTAGACCAGCTGCTTCTTCACAGGCTTCATCAAGATCATCTGCAAGGATCCGGGAAAATGCAAACAATGGTGGAAAATAGAGCAGGAGTTGTATGGGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

128

Amino Acids

14.24

Weight (kDa)

10.3

Isoelectric Point (pI)

36.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0015094)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06610
fragaria_vesca	FvH4_4g19820
malus_domestica	MD13G1153200.v1.1 MD16G1153600.v1.1
prunus_persica	Prupe.1G116800_v2.0.a1
pyrus_communis	pycom16g13040
rosa_chinensis	RchiOBHm_Chr4g0425361
rosa_laevigata	RLG00000007373
rosa_multiflora	Rmu_sc0001900.1_g000049
rosa_roxburghii	Rroxscaffold_5G00367350
rosa_rugosa	Rorug04G0202500
rosa_samantha	Rh4AG259700 Rh4BG265600 Rh4CG276900 Rh4DG261600
rosa_wichuraiana	Rw4G022480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	44
AccI	GTMKAC	1 cut(s)	288
AclWI	GGATC	2 cut(s)	327, 340
AfiI	CCNNNNNNNGG	1 cut(s)	44
AgsI	TTSAA	2 cut(s)	67, 279
AjuI	GAANNNNNNNTTGG	2 cut(s)	259, 291
AluBI	AGCT	5 cut(s)	43, 143, 244, 272, 295
AluI	AGCT	5 cut(s)	43, 143, 244, 272, 295
Alw26I	GTCTC	1 cut(s)	230
AlwI	GGATC	2 cut(s)	327, 340
AoxI	GGCC	2 cut(s)	198, 249
ApeKI	GCWGC	4 cut(s)	140, 217, 244, 295
AspS9I	GGNCC	1 cut(s)	35
AsuC2I	CCSGG	1 cut(s)	337
AvaII	GGWCC	1 cut(s)	35
BamHI	GGATCC	1 cut(s)	332
BbsI	GAAGAC	1 cut(s)	110
BbvI	GCAGC	4 cut(s)	152, 229, 231, 282
BclI	TGATCA	1 cut(s)	3
BcnI	CCSGG	1 cut(s)	337
BcoDI	GTCTC	1 cut(s)	230
BfmI	CTRYAG	1 cut(s)	245
BisI	GCNGC	4 cut(s)	141, 218, 245, 296
BlsI	GCNGC	4 cut(s)	142, 219, 246, 297
Bme1390I	CCNGG	1 cut(s)	337
Bme18I	GGWCC	1 cut(s)	35
BmgT120I	GGNCC	1 cut(s)	35
BmiI	GGNNCC	2 cut(s)	36, 334
BmrFI	CCNGG	1 cut(s)	337
BmrI	ACTGGG	1 cut(s)	98
BmuI	ACTGGG	1 cut(s)	98
BpiI	GAAGAC	1 cut(s)	110
BpuMI	CCSGG	1 cut(s)	337
BsaI	GGTCTC	1 cut(s)	230
BsaJI	CCNNGG	3 cut(s)	129, 201, 252
Bsc4I	CCNNNNNNNGG	1 cut(s)	44
Bse1I	ACTGG	1 cut(s)	93
BseDI	CCNNGG	3 cut(s)	129, 201, 252
BseLI	CCNNNNNNNGG	1 cut(s)	44
BseMII	CTCAG	2 cut(s)	21, 209
BseNI	ACTGG	1 cut(s)	93
BseRI	GAGGAG	1 cut(s)	163
BseXI	GCAGC	4 cut(s)	152, 229, 231, 282
BshFI	GGCC	2 cut(s)	200, 251
BsiSI	CCGG	1 cut(s)	336
BslI	CCNNNNNNNGG	1 cut(s)	44
BsmAI	GTCTC	1 cut(s)	230
BsnI	GGCC	2 cut(s)	200, 251
Bso31I	GGTCTC	1 cut(s)	230
Bsp143I	GATC	3 cut(s)	3, 319, 332
BspANI	GGCC	2 cut(s)	200, 251
BspCNI	CTCAG	2 cut(s)	22, 208
BspLI	GGNNCC	2 cut(s)	36, 334
BspMAI	CTGCAG	1 cut(s)	249
BspPI	GGATC	2 cut(s)	327, 340
BspTNI	GGTCTC	1 cut(s)	230
BsrI	ACTGG	1 cut(s)	93
BssECI	CCNNGG	3 cut(s)	129, 201, 252
BssMI	GATC	3 cut(s)	3, 319, 332
BssT1I	CCWWGG	3 cut(s)	129, 201, 252
Bst4CI	ACNGT	1 cut(s)	80
Bst6I	CTCTTC	1 cut(s)	53
BstC8I	GCNNGC	1 cut(s)	249
BstDEI	CTNAG	3 cut(s)	30, 144, 195
BstKTI	GATC	3 cut(s)	6, 322, 335
BstMAI	GTCTC	1 cut(s)	230
BstMBI	GATC	3 cut(s)	3, 319, 332
BstMWI	GCNNNNNNNGC	1 cut(s)	81
BstSCI	CCNGG	1 cut(s)	335
BstSFI	CTRYAG	1 cut(s)	245
BstV1I	GCAGC	4 cut(s)	152, 229, 231, 282
BstV2I	GAAGAC	1 cut(s)	110
BstX2I	RGATCY	1 cut(s)	332
BstYI	RGATCY	1 cut(s)	332
BsuRI	GGCC	2 cut(s)	200, 251
Cac8I	GCNNGC	1 cut(s)	249
Cfr13I	GGNCC	1 cut(s)	35
CviJI	RGCY	9 cut(s)	43, 143, 200, 220, 244, 251, 272, 295, 310
CviKI_1	RGCY	9 cut(s)	43, 143, 200, 220, 244, 251, 272, 295, 310
DdeI	CTNAG	3 cut(s)	30, 144, 195
DpnI	GATC	3 cut(s)	5, 321, 334
DpnII	GATC	3 cut(s)	3, 319, 332
Eam1104I	CTCTTC	1 cut(s)	53
EarI	CTCTTC	1 cut(s)	53
Eco130I	CCWWGG	3 cut(s)	129, 201, 252
Eco31I	GGTCTC	1 cut(s)	230
Eco47I	GGWCC	1 cut(s)	35
EcoT14I	CCWWGG	3 cut(s)	129, 201, 252
EcoT22I	ATGCAT	1 cut(s)	16
ErhI	CCWWGG	3 cut(s)	129, 201, 252
FaiI	YATR	7 cut(s)	16, 18, 86, 96, 114, 186, 379
FauNDI	CATATG	1 cut(s)	16
FbaI	TGATCA	1 cut(s)	3
FblI	GTMKAC	1 cut(s)	288
Fnu4HI	GCNGC	4 cut(s)	141, 218, 245, 296
Fsp4HI	GCNGC	4 cut(s)	141, 218, 245, 296
GluI	GCNGC	4 cut(s)	141, 218, 245, 296
HaeIII	GGCC	2 cut(s)	200, 251
HapII	CCGG	1 cut(s)	336
HindIII	AAGCTT	1 cut(s)	41
HinfI	GANTC	1 cut(s)	26
HpaII	CCGG	1 cut(s)	336
Hpy166II	GTNNAC	1 cut(s)	289
Hpy188I	TCNGA	3 cut(s)	31, 57, 260
Hpy188III	TCNNGA	1 cut(s)	317
Hpy8I	GTNNAC	1 cut(s)	289
HpyAV	CCTTC	2 cut(s)	131, 285
HpyCH4III	ACNGT	1 cut(s)	80
HpyCH4V	TGCA	4 cut(s)	14, 247, 328, 346
HpyF10VI	GCNNNNNNNGC	1 cut(s)	81
HpyF3I	CTNAG	3 cut(s)	30, 144, 195
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	3 cut(s)	3, 319, 332
LmnI	GCTCC	1 cut(s)	277
LpnPI	CCDG	9 cut(s)	74, 121, 150, 182, 233, 292, 305, 349, 354
Lsp1109I	GCAGC	4 cut(s)	152, 229, 231, 282
MalI	GATC	3 cut(s)	5, 321, 334
MboI	GATC	3 cut(s)	3, 319, 332
MboII	GAAGA	3 cut(s)	70, 115, 293
MflI	RGATCY	1 cut(s)	332
MlyI	GAGTC	1 cut(s)	35
MnlI	CCTC	5 cut(s)	25, 141, 144, 163, 273
Mph1103I	ATGCAT	1 cut(s)	16
MspA1I	CMGCKG	1 cut(s)	295
MspI	CCGG	1 cut(s)	336
MspR9I	CCNGG	1 cut(s)	337
MwoI	GCNNNNNNNGC	1 cut(s)	81
NciI	CCSGG	1 cut(s)	337
NdeI	CATATG	1 cut(s)	16
NdeII	GATC	3 cut(s)	3, 319, 332
NlaIV	GGNNCC	2 cut(s)	36, 334
NsiI	ATGCAT	1 cut(s)	16
PflMI	CCANNNNNTGG	1 cut(s)	44
PfoI	TCCNGGA	1 cut(s)	335
PkrI	GCNGC	4 cut(s)	142, 219, 246, 297
PleI	GAGTC	1 cut(s)	34
PpsI	GAGTC	1 cut(s)	34
PspN4I	GGNNCC	2 cut(s)	36, 334
PspPI	GGNCC	1 cut(s)	35
PstI	CTGCAG	1 cut(s)	249
PsuI	RGATCY	1 cut(s)	332
PvuII	CAGCTG	1 cut(s)	295
SatI	GCNGC	4 cut(s)	141, 218, 245, 296
Sau3AI	GATC	3 cut(s)	3, 319, 332
Sau96I	GGNCC	1 cut(s)	35
SchI	GAGTC	1 cut(s)	35
ScrFI	CCNGG	1 cut(s)	337
SfcI	CTRYAG	1 cut(s)	245
SinI	GGWCC	1 cut(s)	35
StyD4I	CCNGG	1 cut(s)	335
StyI	CCWWGG	3 cut(s)	129, 201, 252
TaaI	ACNGT	1 cut(s)	80
TseI	GCWGC	4 cut(s)	140, 217, 244, 295
TspDTI	ATGAA	2 cut(s)	33, 302
Van91I	CCANNNNNTGG	1 cut(s)	44
VpaK11BI	GGWCC	1 cut(s)	35
XmiI	GTMKAC	1 cut(s)	288
Zsp2I	ATGCAT	1 cut(s)	16

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.