AT3G07910

Reactive oxygen species modulator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0017205
Physical Location & Seq
Reverse (-)
2522918 .. 2524168
1251 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G07910.1

Sequence Viewer

Length: 225 bp
ATGGCGAAAAATAGCTGTTTGGCCAAAATCACTGCCGGAGTTGCCGTTGGCGGCGCTCTTGGCGGCGCAGTAGGTGCTGTCTATGGAACTTACGAGGCGATTAGAGTCAAGGTTCCGGGGCTTCATAAGGTTAGATTCATTGGGCAAACTACCCTCAGCAGCGCAGCAATTTTCGGGCTTTTTCTAGGTGCGGGCAGTTTGATTCACTGTGGAAAAGGCTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Romo1

Protein Analysis

74

Amino Acids

7.37

Weight (kDa)

9.83

Isoelectric Point (pI)

13.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Romo1 PF10247 5 - 70 1.6e-21 Reactive mitochondrial oxygen species modulator 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017205)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07910
fragaria_vesca FvH4_3g28030
malus_domestica MD00G1126200.v1.1 MD00G1154200.v1.1
prunus_persica Prupe.4G268400_v2.0.a1
pyrus_communis pycom03g12330 pycom11g16150
rosa_chinensis RchiOBHm_Chr5g0050711
rosa_multiflora Rmu_sc0002117.1_g000026
rosa_roxburghii Rroxscaffold_1G00030070
rosa_rugosa Rorug05G0263200
rosa_samantha Rh5BG344500
rosa_wichuraiana Rw5G031630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 51, 63, 191
AcoI YGGCCR 1 cut(s) 21
AluBI AGCT 1 cut(s) 15
AluI AGCT 1 cut(s) 15
AoxI GGCC 1 cut(s) 21
ApeKI GCWGC 2 cut(s) 159, 164
AspLEI GCGC 3 cut(s) 56, 68, 164
AsuC2I CCSGG 1 cut(s) 117
BalI TGGCCA 1 cut(s) 23
BbvCI CCTCAGC 1 cut(s) 155
BbvI GCAGC 2 cut(s) 171, 176
BceAI ACGGC 1 cut(s) 29
BcnI CCSGG 1 cut(s) 117
BfaI CTAG 1 cut(s) 185
BfoI RGCGCY 1 cut(s) 57
BisI GCNGC 4 cut(s) 52, 64, 160, 165
BlsI GCNGC 4 cut(s) 53, 65, 161, 166
Bme1390I CCNGG 1 cut(s) 117
BmiI GGNNCC 1 cut(s) 114
BmrFI CCNGG 1 cut(s) 117
Bpu10I CCTNAGC 1 cut(s) 155
BpuMI CCSGG 1 cut(s) 117
BsaJI CCNNGG 1 cut(s) 116
BsaXI ACNNNNNCTCC 2 cut(s) 30, 60
BseDI CCNNGG 1 cut(s) 116
BseMII CTCAG 1 cut(s) 169
BseXI GCAGC 2 cut(s) 171, 176
BshFI GGCC 1 cut(s) 23
BsiSI CCGG 2 cut(s) 36, 116
BsnI GGCC 1 cut(s) 23
BspACI CCGC 3 cut(s) 51, 63, 191
BspANI GGCC 1 cut(s) 23
BspCNI CTCAG 1 cut(s) 168
BspLI GGNNCC 1 cut(s) 114
BssECI CCNNGG 1 cut(s) 116
Bst4CI ACNGT 1 cut(s) 209
BstAPI GCANNNNNTGC 1 cut(s) 74
BstC8I GCNNGC 1 cut(s) 193
BstDEI CTNAG 1 cut(s) 155
BstH2I RGCGCY 1 cut(s) 57
BstHHI GCGC 3 cut(s) 56, 68, 164
BstMWI GCNNNNNNNGC 3 cut(s) 41, 60, 74
BstSCI CCNGG 1 cut(s) 115
BstV1I GCAGC 2 cut(s) 171, 176
BsuRI GGCC 1 cut(s) 23
BtsI GCAGTG 1 cut(s) 30
BtsIMutI CAGTG 2 cut(s) 30, 205
Cac8I GCNNGC 1 cut(s) 193
CfoI GCGC 3 cut(s) 56, 68, 164
CviJI RGCY 5 cut(s) 15, 23, 121, 178, 219
CviKI_1 RGCY 5 cut(s) 15, 23, 121, 178, 219
DdeI CTNAG 1 cut(s) 155
EaeI YGGCCR 1 cut(s) 21
FaiI YATR 2 cut(s) 84, 126
FauI CCCGC 1 cut(s) 184
Fnu4HI GCNGC 4 cut(s) 52, 64, 160, 165
Fsp4HI GCNGC 4 cut(s) 52, 64, 160, 165
FspBI CTAG 1 cut(s) 185
GlaI GCGC 3 cut(s) 55, 67, 163
GluI GCNGC 4 cut(s) 52, 64, 160, 165
HaeII RGCGCY 1 cut(s) 57
HaeIII GGCC 1 cut(s) 23
HapII CCGG 2 cut(s) 36, 116
HhaI GCGC 3 cut(s) 56, 68, 164
Hin6I GCGC 3 cut(s) 54, 66, 162
HinP1I GCGC 3 cut(s) 54, 66, 162
HinfI GANTC 3 cut(s) 105, 135, 202
HpaII CCGG 2 cut(s) 36, 116
HpyCH4III ACNGT 1 cut(s) 209
HpyF10VI GCNNNNNNNGC 3 cut(s) 41, 60, 74
HpyF3I CTNAG 1 cut(s) 155
HspAI GCGC 3 cut(s) 54, 66, 162
LpnPI CCDG 2 cut(s) 49, 129
Lsp1109I GCAGC 2 cut(s) 171, 176
MaeI CTAG 1 cut(s) 185
MlsI TGGCCA 1 cut(s) 23
MluCI AATT 1 cut(s) 168
MluNI TGGCCA 1 cut(s) 23
MlyI GAGTC 1 cut(s) 114
MnlI CCTC 2 cut(s) 88, 164
Mox20I TGGCCA 1 cut(s) 23
MscI TGGCCA 1 cut(s) 23
Msp20I TGGCCA 1 cut(s) 23
MspI CCGG 2 cut(s) 36, 116
MspR9I CCNGG 1 cut(s) 117
MwoI GCNNNNNNNGC 3 cut(s) 41, 60, 74
NciI CCSGG 1 cut(s) 117
NlaIV GGNNCC 1 cut(s) 114
PfeI GAWTC 2 cut(s) 135, 202
PkrI GCNGC 4 cut(s) 53, 65, 161, 166
PleI GAGTC 1 cut(s) 113
PpsI GAGTC 1 cut(s) 113
PspN4I GGNNCC 1 cut(s) 114
SatI GCNGC 4 cut(s) 52, 64, 160, 165
SchI GAGTC 1 cut(s) 114
ScrFI CCNGG 1 cut(s) 117
SetI ASST 5 cut(s) 17, 76, 114, 132, 190
SgeI CNNG 9 cut(s) 48, 71, 106, 121, 128, 129, 187, 197, 204
Sse9I AATT 1 cut(s) 168
SsiI CCGC 3 cut(s) 51, 63, 191
SspMI CTAG 1 cut(s) 185
StyD4I CCNGG 1 cut(s) 115
TaaI ACNGT 1 cut(s) 209
TasI AATT 1 cut(s) 168
TauI GCSGC 2 cut(s) 54, 66
TfiI GAWTC 2 cut(s) 135, 202
TscAI CASTG 2 cut(s) 37, 212
TseI GCWGC 2 cut(s) 159, 164
TspDTI ATGAA 2 cut(s) 113, 127
TspRI CASTG 2 cut(s) 37, 212
XspI CTAG 1 cut(s) 185
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.