Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0001093

Physical Location & Seq

Genomic Coordinates Forward (+)

29881461 .. 29886151

Gene Structure 4691 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0263200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1227 bp

ATGGAAATGGTGAATTCTGTTGGTAATTGTATCCAAAGGAAGAATGTTGAGTGGTTGGATCTGGAATCTTTCGAAGGTGTGGTCGATAATGTACTTTCATCGCTTCCTGTCAAGTGCCTTCTAAATGTTAAGGCTGTTTCTAAATTCTTGCGTGATTTGATTCGTAGTCAAGCTTTCATTAGATTGCATTTAAGTCGGTCAAGAGAAAATGCCTTGTATATATTTTTCCCTTTTATGCCAATTAACAGAAACATATATATCATTGATGCTGATGCGGTAGTCACTGAAACAGTCACTCTTCCTACTGATGAGAATCTATCAACTCTTAGTATGGTTTGTTCCTATAATGGTTTGATTTGTCTCACCAATTTTCCCGTGACTCTTTACTCATATAGTTCTCAAGGAGTGGCAGTGGCAGACTTGGAAATCCTGATCTGCAATCCCGCCACTCATGAAGTTGGTTTACTTCCAAAATGTAGCCCATCAGAAGAGGACCTAGGCATTGGTGTTGCCTTTGGCCCAGAGATCAGTGAGTATAAAGTATTTCGGTTTTTCCGTTCCAAATCCAATTCTGAAATAGTCCTCCCTGAGCCAGAGGTTGTGCCATATTGGTTTTTGCTTCCCACATCCAGACCTGAAACAGTCCTCCCTCCAGAGTGTGAGATATATTCATCTAGAACTGGAACCTGGAGTTGCATAGGTCCTGTTCAGCATCGTCCTATGGGTGCACATCACGTGTTTGTTAATGGAAAAGTTTATTGGTTTATTCCCTCAGAAGAAAATTATGATATCCCTGGATCCATTCTTTCAGTTGATATGGAGGAACATTTTGAAGTTGTCGGGCTTCCAGATACACTCACAGAACTCTCCTTCTTAATTGATTTTGAAGGCTGCTTATCAGTAGTCGCGGTTTTTGATAAAGATGAGCCTGTGGTTATTTGGATTTTAAAGAATGAAAATGAATATGTTTGGGAGAAGAAATGCAGTGCTGGTATTCCCTACAAAGGAATGATGGAGGAACTTCACTCTGTAGCTGCTAGAGAAAGTGACATTTTTTTCATAACTGCACACGATTATATTATCTTAGACACAGATGACAGTTCCTGGGAACTTGTTGAGTTTGAGGAGTTTGAACCTAATGCTCACGCTGTTTTTCCATACACAGAAAGCCTCCTCCCTTGTAGTGGACGGTTTGCAGGGGAGGTGAACAATCAAAGAGCAGCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Romo1

Protein Analysis

408

Amino Acids

46.04

Weight (kDa)

4.55

Isoelectric Point (pI)

42.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FBA_3	PF08268	92 - 334	1.3e-16	F-box associated beta propeller domain
FBA_1	PF07734	94 - 361	1.6e-10	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001093)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G25400 AT1G25400 AT1G68440
fragaria_vesca	FvH4_4g27210 FvH4_5g09320 FvH4_5g18320 FvH4_5g36190 FvH4_5g36660 FvH4_6g02080 FvH4_6g18410 FvH4_6g37922 FvH4_6g48101
malus_domestica	MD13G1040500.v1.1 MD16G1041500.v1.1
prunus_persica	Prupe.1G312600_v2.0.a1
pyrus_communis	pycom13g03470 pycom16g03590
rosa_chinensis	RchiOBHm_Chr2g0089781 RchiOBHm_Chr2g0161601 RchiOBHm_Chr4g0435001 RchiOBHm_Chr5g0057351 RchiOBHm_Chr6g0279821 RchiOBHm_Chr7g0227101
rosa_laevigata	RLG00000006630 RLG00000007926
rosa_multiflora	Rmu_co7981798.1_g000001 Rmu_co8240437.1_g000001 Rmu_sc0000400.1_g000034 Rmu_sc0000869.1_g000026 Rmu_sc0001246.1_g000017 Rmu_sc0002430.1_g000001 Rmu_sc0004574.1_g000051 Rmu_sc0009868.1_g000002 Rmu_sc0010765.1_g000001
rosa_roxburghii	Rroxscaffold_1G00019050 Rroxscaffold_2G00088100 Rroxscaffold_5G00376170
rosa_rugosa	Rorug02G0108200 Rorug02G0398300 Rorug02G0435100 Rorug03G0104500 Rorug03G0112000 Rorug03G0209100 Rorug04G0021800 Rorug04G0169800 Rorug04G0281500 Rorug04G0390300 Rorug05G0263200 Rorug05G0281200 Rorug06G0472700 Rorug07G0039700 Rorug07G0207300
rosa_samantha	Rh4AG337000 Rh4BG161500 Rh4BG344900 Rh4CG359600 Rh4DG339400 Rh5DG431200
rosa_wichuraiana	Rw4G029380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	908
AciI	CCGC	3 cut(s)	275, 444, 908
AclWI	GGATC	3 cut(s)	66, 792, 805
AcsI	RAATTY	2 cut(s)	13, 143
AcvI	CACGTG	1 cut(s)	736
AfaI	GTAC	1 cut(s)	93
AfiI	CCNNNNNNNGG	2 cut(s)	1004, 1184
AflIII	ACRYGT	1 cut(s)	735
AgsI	TTSAA	3 cut(s)	833, 887, 1133
AjnI	CCWGG	3 cut(s)	686, 793, 1103
AjuI	GAANNNNNNNTTGG	2 cut(s)	742, 774
AluBI	AGCT	2 cut(s)	173, 1034
AluI	AGCT	2 cut(s)	173, 1034
Alw21I	GWGCWC	1 cut(s)	730
Alw26I	GTCTC	1 cut(s)	365
Alw44I	GTGCAC	1 cut(s)	726
AlwI	GGATC	3 cut(s)	66, 792, 805
AlwNI	CAGNNNCTG	1 cut(s)	1104
AoxI	GGCC	1 cut(s)	517
ApaLI	GTGCAC	1 cut(s)	726
ApeKI	GCWGC	3 cut(s)	891, 1034, 1220
ApoI	RAATTY	2 cut(s)	13, 143
ArsI	GACNNNNNNTTYG	2 cut(s)	66, 98
AspA2I	CCTAGG	1 cut(s)	496
AspS9I	GGNCC	3 cut(s)	493, 518, 701
AsuHPI	GGTGA	3 cut(s)	22, 355, 1216
AsuII	TTCGAA	1 cut(s)	72
AvaII	GGWCC	2 cut(s)	493, 701
AvrII	CCTAGG	1 cut(s)	496
BaeGI	GKGCMC	1 cut(s)	730
BamHI	GGATCC	1 cut(s)	797
BarI	GAAGNNNNNNTAC	2 cut(s)	447, 479
BbrPI	CACGTG	1 cut(s)	736
Bbv12I	GWGCWC	1 cut(s)	730
BbvI	GCAGC	2 cut(s)	878, 1021
BccI	CCATC	2 cut(s)	490, 1006
BcgI	CGANNNNNNTGC	2 cut(s)	176, 210
BciT130I	CCWGG	3 cut(s)	688, 795, 1105
BciVI	GTATCC	1 cut(s)	41
BcoDI	GTCTC	1 cut(s)	365
BfaI	CTAG	3 cut(s)	497, 675, 1038
BfmI	CTRYAG	1 cut(s)	1029
BfuI	GTATCC	1 cut(s)	41
BisI	GCNGC	3 cut(s)	892, 1035, 1221
BlnI	CCTAGG	1 cut(s)	496
BlsI	GCNGC	3 cut(s)	893, 1036, 1222
Bme1390I	CCNGG	3 cut(s)	688, 795, 1105
Bme18I	GGWCC	2 cut(s)	493, 701
BmgT120I	GGNCC	3 cut(s)	493, 518, 701
BmiI	GGNNCC	2 cut(s)	685, 799
BmrFI	CCNGG	3 cut(s)	688, 795, 1105
BmsI	GCATC	3 cut(s)	256, 262, 721
BpmI	CTGGAG	2 cut(s)	636, 709
Bpu10I	CCTNAGC	1 cut(s)	588
Bpu14I	TTCGAA	1 cut(s)	72
BpuEI	CTTGAG	1 cut(s)	384
BsaAI	YACGTR	1 cut(s)	736
BsaBI	GATNNNNATC	1 cut(s)	312
BsaJI	CCNNGG	3 cut(s)	496, 793, 1104
BsaXI	ACNNNNNCTCC	2 cut(s)	396, 426
Bsc4I	CCNNNNNNNGG	2 cut(s)	1004, 1184
Bse1I	ACTGG	1 cut(s)	685
Bse8I	GATNNNNATC	1 cut(s)	312
BseBI	CCWGG	3 cut(s)	688, 795, 1105
BseDI	CCNNGG	3 cut(s)	496, 793, 1104
BseGI	GGATG	1 cut(s)	626
BseJI	GATNNNNATC	1 cut(s)	312
BseLI	CCNNNNNNNGG	2 cut(s)	1004, 1184
BseMII	CTCAG	2 cut(s)	579, 786
BseNI	ACTGG	1 cut(s)	685
BseRI	GAGGAG	2 cut(s)	1139, 1163
BseSI	GKGCMC	1 cut(s)	730
BseXI	GCAGC	2 cut(s)	878, 1021
BsgI	GTGCAG	1 cut(s)	1050
Bsh1236I	CGCG	1 cut(s)	908
BshFI	GGCC	1 cut(s)	519
BsiHKAI	GWGCWC	1 cut(s)	730
BslI	CCNNNNNNNGG	2 cut(s)	1004, 1184
BsmAI	GTCTC	1 cut(s)	365
BsnI	GGCC	1 cut(s)	519
Bsp119I	TTCGAA	1 cut(s)	72
Bsp1286I	GDGCHC	1 cut(s)	730
Bsp143I	GATC	4 cut(s)	58, 432, 525, 797
BspACI	CCGC	3 cut(s)	275, 444, 908
BspANI	GGCC	1 cut(s)	519
BspCNI	CTCAG	2 cut(s)	580, 785
BspFNI	CGCG	1 cut(s)	908
BspHI	TCATGA	1 cut(s)	451
BspLI	GGNNCC	2 cut(s)	685, 799
BspPI	GGATC	3 cut(s)	66, 792, 805
BspT104I	TTCGAA	1 cut(s)	72
BsrI	ACTGG	1 cut(s)	685
BssECI	CCNNGG	3 cut(s)	496, 793, 1104
BssMI	GATC	4 cut(s)	58, 432, 525, 797
BssT1I	CCWWGG	1 cut(s)	496
Bst2UI	CCWGG	3 cut(s)	688, 795, 1105
Bst4CI	ACNGT	4 cut(s)	292, 643, 1100, 1191
Bst6I	CTCTTC	2 cut(s)	303, 483
BstBAI	YACGTR	1 cut(s)	736
BstBI	TTCGAA	1 cut(s)	72
BstDEI	CTNAG	4 cut(s)	326, 588, 772, 1084
BstF5I	GGATG	1 cut(s)	626
BstFNI	CGCG	1 cut(s)	908
BstKTI	GATC	4 cut(s)	61, 435, 528, 800
BstMAI	GTCTC	1 cut(s)	365
BstMBI	GATC	4 cut(s)	58, 432, 525, 797
BstNI	CCWGG	3 cut(s)	688, 795, 1105
BstSCI	CCNGG	3 cut(s)	686, 793, 1103
BstSFI	CTRYAG	1 cut(s)	1029
BstSLI	GKGCMC	1 cut(s)	730
BstUI	CGCG	1 cut(s)	908
BstV1I	GCAGC	2 cut(s)	878, 1021
BstX2I	RGATCY	2 cut(s)	58, 797
BstYI	RGATCY	2 cut(s)	58, 797
BsuI	GTATCC	1 cut(s)	41
BsuRI	GGCC	1 cut(s)	519
BtgZI	GCGATG	1 cut(s)	84
BtsCI	GGATG	1 cut(s)	626
BtsI	GCAGTG	2 cut(s)	417, 991
BtsIMutI	CAGTG	4 cut(s)	282, 417, 535, 991
CaiI	CAGNNNCTG	1 cut(s)	1104
CciI	TCATGA	1 cut(s)	451
Cfr13I	GGNCC	3 cut(s)	493, 518, 701
Csp6I	GTAC	1 cut(s)	92
CviAII	CATG	1 cut(s)	452
CviQI	GTAC	1 cut(s)	92
DdeI	CTNAG	4 cut(s)	326, 588, 772, 1084
DpnI	GATC	4 cut(s)	60, 434, 527, 799
DpnII	GATC	4 cut(s)	58, 432, 525, 797
DraI	TTTAAA	1 cut(s)	948
Eam1104I	CTCTTC	2 cut(s)	303, 483
EarI	CTCTTC	2 cut(s)	303, 483
Eco130I	CCWWGG	1 cut(s)	496
Eco32I	GATATC	1 cut(s)	790
Eco47I	GGWCC	2 cut(s)	493, 701
Eco72I	CACGTG	1 cut(s)	736
EcoO109I	RGGNCCY	2 cut(s)	493, 701
EcoRI	GAATTC	1 cut(s)	13
EcoRII	CCWGG	3 cut(s)	686, 793, 1103
EcoRV	GATATC	1 cut(s)	790
EcoT14I	CCWWGG	1 cut(s)	496
ErhI	CCWWGG	1 cut(s)	496
FaeI	CATG	1 cut(s)	455
FatI	CATG	1 cut(s)	451
FauI	CCCGC	1 cut(s)	451
Fnu4HI	GCNGC	3 cut(s)	892, 1035, 1221
FokI	GGATG	1 cut(s)	613
Fsp4HI	GCNGC	3 cut(s)	892, 1035, 1221
FspBI	CTAG	3 cut(s)	497, 675, 1038
GluI	GCNGC	3 cut(s)	892, 1035, 1221
GsuI	CTGGAG	2 cut(s)	636, 709
HaeIII	GGCC	1 cut(s)	519
Hin1II	CATG	1 cut(s)	455
HindIII	AAGCTT	1 cut(s)	171
HinfI	GANTC	4 cut(s)	65, 160, 313, 379
HphI	GGTGA	3 cut(s)	22, 355, 1216
Hpy166II	GTNNAC	4 cut(s)	464, 728, 1187, 1207
Hpy188I	TCNGA	3 cut(s)	487, 574, 775
Hpy188III	TCNNGA	8 cut(s)	62, 201, 430, 452, 630, 653, 675, 848
Hpy8I	GTNNAC	4 cut(s)	464, 728, 1187, 1207
HpyAV	CCTTC	4 cut(s)	68, 128, 880, 881
HpyCH4III	ACNGT	4 cut(s)	292, 643, 1100, 1191
HpyCH4IV	ACGT	1 cut(s)	735
HpyCH4V	TGCA	7 cut(s)	187, 438, 696, 728, 984, 1067, 1196
HpyF3I	CTNAG	4 cut(s)	326, 588, 772, 1084
HpySE526I	ACGT	1 cut(s)	735
Hsp92II	CATG	1 cut(s)	455
Kzo9I	GATC	4 cut(s)	58, 432, 525, 797
Lsp1109I	GCAGC	2 cut(s)	878, 1021
LweI	GCATC	3 cut(s)	256, 262, 721
MaeI	CTAG	3 cut(s)	497, 675, 1038
MaeII	ACGT	1 cut(s)	735
MaeIII	GTNAC	4 cut(s)	280, 292, 376, 1046
MalI	GATC	4 cut(s)	60, 434, 527, 799
MboI	GATC	4 cut(s)	58, 432, 525, 797
MboII	GAAGA	5 cut(s)	52, 290, 500, 788, 988
MflI	RGATCY	2 cut(s)	58, 797
MhlI	GDGCHC	1 cut(s)	730
MluCI	AATT	8 cut(s)	13, 25, 143, 240, 367, 568, 781, 876
MlyI	GAGTC	1 cut(s)	373
MmeI	TCCRAC	1 cut(s)	36
MseI	TTAA	6 cut(s)	129, 191, 243, 744, 875, 947
MspR9I	CCNGG	3 cut(s)	688, 795, 1105
MvaI	CCWGG	3 cut(s)	688, 795, 1105
MvnI	CGCG	1 cut(s)	908
NdeII	GATC	4 cut(s)	58, 432, 525, 797
NlaIII	CATG	1 cut(s)	455
NlaIV	GGNNCC	2 cut(s)	685, 799
NmuCI	GTSAC	4 cut(s)	280, 292, 376, 1046
NspV	TTCGAA	1 cut(s)	72
PagI	TCATGA	1 cut(s)	451
PcsI	WCGNNNNNNNCGW	1 cut(s)	553
PfeI	GAWTC	3 cut(s)	65, 160, 313
PkrI	GCNGC	3 cut(s)	893, 1036, 1222
PleI	GAGTC	1 cut(s)	373
PmaCI	CACGTG	1 cut(s)	736
PmlI	CACGTG	1 cut(s)	736
PpsI	GAGTC	1 cut(s)	373
Ppu21I	YACGTR	1 cut(s)	736
PpuMI	RGGWCCY	2 cut(s)	493, 701
Psp5II	RGGWCCY	2 cut(s)	493, 701
Psp6I	CCWGG	3 cut(s)	686, 793, 1103
PspCI	CACGTG	1 cut(s)	736
PspGI	CCWGG	3 cut(s)	686, 793, 1103
PspN4I	GGNNCC	2 cut(s)	685, 799
PspPI	GGNCC	3 cut(s)	493, 518, 701
PspPPI	RGGWCCY	2 cut(s)	493, 701
PsrI	GAACNNNNNNTAC	2 cut(s)	322, 354
PstNI	CAGNNNCTG	1 cut(s)	1104
PsuI	RGATCY	2 cut(s)	58, 797
RsaI	GTAC	1 cut(s)	93
RsaNI	GTAC	1 cut(s)	92
SaqAI	TTAA	6 cut(s)	129, 191, 243, 744, 875, 947
SatI	GCNGC	3 cut(s)	892, 1035, 1221
Sau3AI	GATC	4 cut(s)	58, 432, 525, 797
Sau96I	GGNCC	3 cut(s)	493, 518, 701
SchI	GAGTC	1 cut(s)	373
ScrFI	CCNGG	3 cut(s)	688, 795, 1105
SduI	GDGCHC	1 cut(s)	730
SfaNI	GCATC	3 cut(s)	256, 262, 721
SfcI	CTRYAG	1 cut(s)	1029
SfuI	TTCGAA	1 cut(s)	72
SinI	GGWCC	2 cut(s)	493, 701
SmlI	CTYRAG	1 cut(s)	399
SmoI	CTYRAG	1 cut(s)	399
Sse9I	AATT	8 cut(s)	13, 25, 143, 240, 367, 568, 781, 876
SsiI	CCGC	3 cut(s)	275, 444, 908
SspMI	CTAG	3 cut(s)	497, 675, 1038
StyD4I	CCNGG	3 cut(s)	686, 793, 1103
StyI	CCWWGG	1 cut(s)	496
TaaI	ACNGT	4 cut(s)	292, 643, 1100, 1191
TaiI	ACGT	1 cut(s)	738
TaqI	TCGA	2 cut(s)	72, 84
TaqII	GACCGA	1 cut(s)	186
TasI	AATT	8 cut(s)	13, 25, 143, 240, 367, 568, 781, 876
TatI	WGTACW	1 cut(s)	91
TfiI	GAWTC	3 cut(s)	65, 160, 313
Tru1I	TTAA	6 cut(s)	129, 191, 243, 744, 875, 947
Tru9I	TTAA	6 cut(s)	129, 191, 243, 744, 875, 947
TscAI	CASTG	4 cut(s)	289, 417, 535, 991
TseFI	GTSAC	4 cut(s)	280, 292, 376, 1046
TseI	GCWGC	3 cut(s)	891, 1034, 1220
Tsp45I	GTSAC	4 cut(s)	280, 292, 376, 1046
TspDTI	ATGAA	7 cut(s)	87, 166, 468, 660, 969, 975, 1048
TspGWI	ACGGA	1 cut(s)	545
TspRI	CASTG	4 cut(s)	289, 417, 535, 991
VneI	GTGCAC	1 cut(s)	726
VpaK11BI	GGWCC	2 cut(s)	493, 701
XapI	RAATTY	2 cut(s)	13, 143
XbaI	TCTAGA	1 cut(s)	674
XmaJI	CCTAGG	1 cut(s)	496
XspI	CTAG	3 cut(s)	497, 675, 1038

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.