Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0001093

Physical Location & Seq

Genomic Coordinates Reverse (-)

10129868 .. 10130644

Gene Structure 777 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00088100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGGATCTTATGGCACTGGTCTTTTCTCTTAGGCGTGTGGCTGGGTGGAGGATAGAGTGTTGGAAAGGGATTCTCGAATTGATGGGAGGCCGGATTGGTTTCAAATCAATTTGGGATGGATTTGCACAATGGGTCGGTAATGAGTTCGCCAAGGAGGATGGTGGTGGCCCGAGATCTCAAGCTGGTTGTGGCGAGTACTTGGCTTGGGTGTCTTCGGTGGGGTGTGCTCACTTGGCTGCACTCATGGTGGTTTCTTGTCGGTATGTTGTCAATGGTCAAATAAAATGTCCCTACTCAATTGAGCTCGGGTTTGGAGGTTTTGGTCATGGTGTGGAGCCATCTATATGGTGTTACTCCTGGAAACAATATGTTACAATTTCGATGCTGTTTGGTTATCAACGGAAAGGTGGATTTCCCTTGCACGTGGTCCGGCGATTTATGGACACGGTGTGGAAGAGGGTGGAGTGGTTCGTTTGGATGTTGGTGACGAGATCGTATAGGGACAATCAAGATTGGTTATCGTTCTTTGTAGCATGGGGTGATAGGCGTAAAAATTGGTTAGGGGTTGGACCTTTTCGGTTCATGGAAGTTACTATTAGTGACGGACCCATAACTAGGGATCTTGGTAGGAATATGTGTCGTGGTGTTGATACCACAACCGGTTATTCCAATGCTTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

226

Amino Acids

25.79

Weight (kDa)

9.14

Isoelectric Point (pI)

33.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001093)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G25400 AT1G25400 AT1G68440
fragaria_vesca	FvH4_4g27210 FvH4_5g09320 FvH4_5g18320 FvH4_5g36190 FvH4_5g36660 FvH4_6g02080 FvH4_6g18410 FvH4_6g37922 FvH4_6g48101
malus_domestica	MD13G1040500.v1.1 MD16G1041500.v1.1
prunus_persica	Prupe.1G312600_v2.0.a1
pyrus_communis	pycom13g03470 pycom16g03590
rosa_chinensis	RchiOBHm_Chr2g0089781 RchiOBHm_Chr2g0161601 RchiOBHm_Chr4g0435001 RchiOBHm_Chr5g0057351 RchiOBHm_Chr6g0279821 RchiOBHm_Chr7g0227101
rosa_laevigata	RLG00000006630 RLG00000007926
rosa_multiflora	Rmu_co7981798.1_g000001 Rmu_co8240437.1_g000001 Rmu_sc0000400.1_g000034 Rmu_sc0000869.1_g000026 Rmu_sc0001246.1_g000017 Rmu_sc0002430.1_g000001 Rmu_sc0004574.1_g000051 Rmu_sc0009868.1_g000002 Rmu_sc0010765.1_g000001
rosa_roxburghii	Rroxscaffold_1G00019050 Rroxscaffold_2G00088100 Rroxscaffold_5G00376170
rosa_rugosa	Rorug02G0108200 Rorug02G0398300 Rorug02G0435100 Rorug03G0104500 Rorug03G0112000 Rorug03G0209100 Rorug04G0021800 Rorug04G0169800 Rorug04G0281500 Rorug04G0390300 Rorug05G0263200 Rorug05G0281200 Rorug06G0472700 Rorug07G0039700 Rorug07G0207300
rosa_samantha	Rh4AG337000 Rh4BG161500 Rh4BG344900 Rh4CG359600 Rh4DG339400 Rh5DG431200
rosa_wichuraiana	Rw4G029380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	12, 627
AcvI	CACGTG	1 cut(s)	424
AdeI	CACNNNGTG	1 cut(s)	450
AfaI	GTAC	1 cut(s)	197
AfiI	CCNNNNNNNGG	1 cut(s)	615
AgeI	ACCGGT	1 cut(s)	659
AgsI	TTSAA	1 cut(s)	103
AjnI	CCWGG	1 cut(s)	356
AluBI	AGCT	2 cut(s)	182, 304
AluI	AGCT	2 cut(s)	182, 304
Alw21I	GWGCWC	2 cut(s)	229, 306
AlwI	GGATC	2 cut(s)	12, 627
Ama87I	CYCGRG	2 cut(s)	169, 305
AoxI	GGCC	2 cut(s)	88, 166
ApeKI	GCWGC	1 cut(s)	236
ArsI	GACNNNNNNTTYG	2 cut(s)	271, 303
AsiGI	ACCGGT	1 cut(s)	659
AspS9I	GGNCC	4 cut(s)	167, 427, 569, 605
AsuHPI	GGTGA	2 cut(s)	496, 551
AvaI	CYCGRG	2 cut(s)	169, 305
AvaII	GGWCC	3 cut(s)	427, 569, 605
BanII	GRGCYC	1 cut(s)	306
BbrPI	CACGTG	1 cut(s)	424
BbsI	GAAGAC	1 cut(s)	204
Bbv12I	GWGCWC	2 cut(s)	229, 306
BbvI	GCAGC	1 cut(s)	223
BccI	CCATC	4 cut(s)	76, 110, 152, 346
BciT130I	CCWGG	1 cut(s)	358
BfaI	CTAG	1 cut(s)	615
BglII	AGATCT	1 cut(s)	173
BisI	GCNGC	1 cut(s)	237
BlsI	GCNGC	1 cut(s)	238
BmcAI	AGTACT	1 cut(s)	197
Bme1390I	CCNGG	1 cut(s)	358
Bme18I	GGWCC	3 cut(s)	427, 569, 605
BmeT110I	CYCGRG	2 cut(s)	169, 305
BmgT120I	GGNCC	4 cut(s)	167, 427, 569, 605
BmiI	GGNNCC	2 cut(s)	336, 607
BmrFI	CCNGG	1 cut(s)	358
BmsI	GCATC	1 cut(s)	372
BpiI	GAAGAC	1 cut(s)	204
BpuEI	CTTGAG	1 cut(s)	162
BsaAI	YACGTR	1 cut(s)	424
BsaJI	CCNNGG	1 cut(s)	150
BsaWI	WCCGGW	1 cut(s)	659
Bsc4I	CCNNNNNNNGG	1 cut(s)	615
Bse118I	RCCGGY	1 cut(s)	659
Bse1I	ACTGG	1 cut(s)	21
BseBI	CCWGG	1 cut(s)	358
BseDI	CCNNGG	1 cut(s)	150
BseGI	GGATG	3 cut(s)	121, 163, 483
BseLI	CCNNNNNNNGG	1 cut(s)	615
BseNI	ACTGG	1 cut(s)	21
BseXI	GCAGC	1 cut(s)	223
BseYI	CCCAGC	1 cut(s)	41
BsgI	GTGCAG	1 cut(s)	222
BshFI	GGCC	2 cut(s)	90, 168
BshTI	ACCGGT	1 cut(s)	659
BsiHKAI	GWGCWC	2 cut(s)	229, 306
BsiHKCI	CYCGRG	2 cut(s)	169, 305
BsiSI	CCGG	3 cut(s)	91, 430, 660
BslFI	GGGAC	2 cut(s)	273, 515
BslI	CCNNNNNNNGG	1 cut(s)	615
BsmFI	GGGAC	2 cut(s)	273, 515
BsnI	GGCC	2 cut(s)	90, 168
BsoBI	CYCGRG	2 cut(s)	169, 305
Bsp1286I	GDGCHC	2 cut(s)	229, 306
Bsp143I	GATC	4 cut(s)	4, 173, 491, 619
BspANI	GGCC	2 cut(s)	90, 168
BspLI	GGNNCC	2 cut(s)	336, 607
BspPI	GGATC	2 cut(s)	12, 627
BsrFI	RCCGGY	1 cut(s)	659
BsrI	ACTGG	1 cut(s)	21
BssAI	RCCGGY	1 cut(s)	659
BssECI	CCNNGG	1 cut(s)	150
BssMI	GATC	4 cut(s)	4, 173, 491, 619
BssT1I	CCWWGG	1 cut(s)	150
Bst2UI	CCWGG	1 cut(s)	358
Bst4CI	ACNGT	1 cut(s)	448
Bst6I	CTCTTC	1 cut(s)	449
BstBAI	YACGTR	1 cut(s)	424
BstDEI	CTNAG	1 cut(s)	29
BstF5I	GGATG	3 cut(s)	121, 163, 483
BstKTI	GATC	4 cut(s)	7, 176, 494, 622
BstMBI	GATC	4 cut(s)	4, 173, 491, 619
BstMWI	GCNNNNNNNGC	1 cut(s)	233
BstNI	CCWGG	1 cut(s)	358
BstSCI	CCNGG	1 cut(s)	356
BstV1I	GCAGC	1 cut(s)	223
BstV2I	GAAGAC	1 cut(s)	204
BstX2I	RGATCY	3 cut(s)	4, 173, 619
BstXI	CCANNNNNNTGG	1 cut(s)	345
BstYI	RGATCY	3 cut(s)	4, 173, 619
BsuRI	GGCC	2 cut(s)	90, 168
BtsCI	GGATG	3 cut(s)	121, 163, 483
BtsIMutI	CAGTG	1 cut(s)	14
Cfr10I	RCCGGY	1 cut(s)	659
Cfr13I	GGNCC	4 cut(s)	167, 427, 569, 605
Csp6I	GTAC	1 cut(s)	196
CspAI	ACCGGT	1 cut(s)	659
CviAII	CATG	4 cut(s)	244, 326, 534, 583
CviJI	RGCY	8 cut(s)	41, 90, 168, 182, 203, 236, 304, 337
CviKI_1	RGCY	8 cut(s)	41, 90, 168, 182, 203, 236, 304, 337
CviQI	GTAC	1 cut(s)	196
DdeI	CTNAG	1 cut(s)	29
DpnI	GATC	4 cut(s)	6, 175, 493, 621
DpnII	GATC	4 cut(s)	4, 173, 491, 619
DraIII	CACNNNGTG	1 cut(s)	450
Eam1104I	CTCTTC	1 cut(s)	449
EarI	CTCTTC	1 cut(s)	449
Ecl136II	GAGCTC	1 cut(s)	304
Eco130I	CCWWGG	1 cut(s)	150
Eco24I	GRGCYC	1 cut(s)	306
Eco47I	GGWCC	3 cut(s)	427, 569, 605
Eco53kI	GAGCTC	1 cut(s)	304
Eco72I	CACGTG	1 cut(s)	424
Eco88I	CYCGRG	2 cut(s)	169, 305
EcoICRI	GAGCTC	1 cut(s)	304
EcoRII	CCWGG	1 cut(s)	356
EcoT14I	CCWWGG	1 cut(s)	150
EcoT38I	GRGCYC	1 cut(s)	306
ErhI	CCWWGG	1 cut(s)	150
FaeI	CATG	4 cut(s)	247, 329, 537, 586
FaqI	GGGAC	2 cut(s)	273, 515
FatI	CATG	4 cut(s)	243, 325, 533, 582
Fnu4HI	GCNGC	1 cut(s)	237
FokI	GGATG	3 cut(s)	128, 170, 490
FriOI	GRGCYC	1 cut(s)	306
Fsp4HI	GCNGC	1 cut(s)	237
FspBI	CTAG	1 cut(s)	615
GluI	GCNGC	1 cut(s)	237
GsaI	CCCAGC	1 cut(s)	45
HaeIII	GGCC	2 cut(s)	90, 168
HapII	CCGG	3 cut(s)	91, 430, 660
Hin1II	CATG	4 cut(s)	247, 329, 537, 586
HinfI	GANTC	1 cut(s)	70
HpaII	CCGG	3 cut(s)	91, 430, 660
HphI	GGTGA	2 cut(s)	496, 551
Hpy188III	TCNNGA	2 cut(s)	74, 509
HpyCH4III	ACNGT	1 cut(s)	448
HpyCH4IV	ACGT	1 cut(s)	423
HpyCH4V	TGCA	3 cut(s)	125, 239, 421
HpyF10VI	GCNNNNNNNGC	1 cut(s)	233
HpyF3I	CTNAG	1 cut(s)	29
HpySE526I	ACGT	1 cut(s)	423
Hsp92II	CATG	4 cut(s)	247, 329, 537, 586
Kzo9I	GATC	4 cut(s)	4, 173, 491, 619
LmnI	GCTCC	1 cut(s)	334
LpnPI	CCDG	8 cut(s)	2, 27, 104, 168, 343, 370, 443, 673
Lsp1109I	GCAGC	1 cut(s)	223
LweI	GCATC	1 cut(s)	372
MaeI	CTAG	1 cut(s)	615
MaeII	ACGT	1 cut(s)	423
MaeIII	GTNAC	5 cut(s)	350, 370, 484, 589, 599
MalI	GATC	4 cut(s)	6, 175, 493, 621
MboI	GATC	4 cut(s)	4, 173, 491, 619
MboII	GAAGA	2 cut(s)	204, 466
MfeI	CAATTG	1 cut(s)	297
MflI	RGATCY	3 cut(s)	4, 173, 619
MhlI	GDGCHC	2 cut(s)	229, 306
MluCI	AATT	5 cut(s)	77, 108, 297, 375, 553
MmeI	TCCRAC	2 cut(s)	41, 547
MnlI	CCTC	5 cut(s)	42, 80, 148, 308, 450
MslI	CAYNNNNRTG	1 cut(s)	343
MspI	CCGG	3 cut(s)	91, 430, 660
MspR9I	CCNGG	1 cut(s)	358
MunI	CAATTG	1 cut(s)	297
MvaI	CCWGG	1 cut(s)	358
MwoI	GCNNNNNNNGC	1 cut(s)	233
NdeII	GATC	4 cut(s)	4, 173, 491, 619
NlaIII	CATG	4 cut(s)	247, 329, 537, 586
NlaIV	GGNNCC	2 cut(s)	336, 607
NmuCI	GTSAC	2 cut(s)	484, 599
PfeI	GAWTC	1 cut(s)	70
PfoI	TCCNGGA	1 cut(s)	356
PinAI	ACCGGT	1 cut(s)	659
PkrI	GCNGC	1 cut(s)	238
PmaCI	CACGTG	1 cut(s)	424
PmlI	CACGTG	1 cut(s)	424
Ppu21I	YACGTR	1 cut(s)	424
Psp124BI	GAGCTC	1 cut(s)	306
Psp6I	CCWGG	1 cut(s)	356
PspCI	CACGTG	1 cut(s)	424
PspFI	CCCAGC	1 cut(s)	41
PspGI	CCWGG	1 cut(s)	356
PspN4I	GGNNCC	2 cut(s)	336, 607
PspPI	GGNCC	4 cut(s)	167, 427, 569, 605
PsuI	RGATCY	3 cut(s)	4, 173, 619
RsaI	GTAC	1 cut(s)	197
RsaNI	GTAC	1 cut(s)	196
RseI	CAYNNNNRTG	1 cut(s)	343
SacI	GAGCTC	1 cut(s)	306
SatI	GCNGC	1 cut(s)	237
Sau3AI	GATC	4 cut(s)	4, 173, 491, 619
Sau96I	GGNCC	4 cut(s)	167, 427, 569, 605
ScaI	AGTACT	1 cut(s)	197
ScrFI	CCNGG	1 cut(s)	358
SduI	GDGCHC	2 cut(s)	229, 306
SetI	ASST	6 cut(s)	184, 306, 319, 409, 426, 574
SfaNI	GCATC	1 cut(s)	372
SinI	GGWCC	3 cut(s)	427, 569, 605
SmiMI	CAYNNNNRTG	1 cut(s)	343
SmlI	CTYRAG	1 cut(s)	177
SmoI	CTYRAG	1 cut(s)	177
Sse9I	AATT	5 cut(s)	77, 108, 297, 375, 553
SspMI	CTAG	1 cut(s)	615
SstI	GAGCTC	1 cut(s)	306
StyD4I	CCNGG	1 cut(s)	356
StyI	CCWWGG	1 cut(s)	150
TaaI	ACNGT	1 cut(s)	448
TaiI	ACGT	1 cut(s)	426
TaqI	TCGA	2 cut(s)	75, 380
TasI	AATT	5 cut(s)	77, 108, 297, 375, 553
TatI	WGTACW	1 cut(s)	195
TfiI	GAWTC	1 cut(s)	70
TscAI	CASTG	1 cut(s)	21
TseFI	GTSAC	2 cut(s)	484, 599
TseI	GCWGC	1 cut(s)	236
Tsp45I	GTSAC	2 cut(s)	484, 599
TspDTI	ATGAA	1 cut(s)	571
TspGWI	ACGGA	2 cut(s)	415, 618
TspRI	CASTG	1 cut(s)	21
VpaK11BI	GGWCC	3 cut(s)	427, 569, 605
XspI	CTAG	1 cut(s)	615
ZrmI	AGTACT	1 cut(s)	197

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.