RchiOBHm_Chr2g0161601

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0001093
Physical Location & Seq
Reverse (-)
77519702 .. 77520709
1008 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ52995

Sequence Viewer

Length: 927 bp
ATGGCAGGTATTGCCGGACGGGAGATGGGGGTCTTGAGACCTTCGATCTTGTCTTCTTTGCGGTGGTCGGGGCTTGGCATGATTCTTCTCTACTCTCAGGCAGAGGCGCAGGCGGGGAGGAGGAATTCGGCGGCGGTGCAGGCTTGGAGCAAGGGGTCAGAGACCAGATCGTGGCGGCGGCTTGCCATGGATCGTATGGCGTTGATCTCTGTTCGGAGGTGGGTCGCTCGGCGATGTTTGCAGCTGTGGGTTCGGGCTCCCGGGAGGATGGGCACAGATGGGTGGAGCGATTTCGTTCCGAGGTGGAAGTGCTCGGCAATTCCATTCTTGTTTCTCGGTGGATTGGATTGGAGTGGATGTGTTTCCAGATCTGGATCCGGCCGACGACAGGCAGGTGAATCGGTGTGGCTTGCGGTGTTGAATGGGTACCTCTGGGGTGGTGAGCTCGAAGGGCAAGAGTTGTGGCGGTGGTCTGCCGGCGGGCAAATTGGAGAGAGGGAAGTTGTTCGTCATAGCTTTGGTCTGGTGCGTGAAGGGATGGTCAATCATGGTAGGTTTGGAGGTTCTGGTCGTGTTGTGGAGCCATCTATATGGTGTTACTCCTGGGAACAATATGTTATAATTTTGATGCTGGTTGGTTATCAACGGAAAGGTGGATTTCCCTTTCACGTGGTCTGGCGGTTTATGGACACGGTGTGGAAGAGGGTGGAGTGGTTCGTCTGGATGTTGGTGACGAGGTTGTATCGTGACGCTCGGGATTGGTTATCGTTCTTTGTAGCCTGGGGTGATAGGCGGAAAAATTGGTTAGGGGTTGAACCTTTTCGGTTCATGGATGTTACTATTAGTGACGGACCCATAACTATGGATCTTGGTAGGAATATGTGTCGTGGTGTTGATACCACAACCGGTTATTCCAATGCTTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

308

Amino Acids

35.27

Weight (kDa)

10.37

Isoelectric Point (pI)

47.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 620
AarI CACCTGC 1 cut(s) 383
Acc36I ACCTGC 1 cut(s) 383
Acc65I GGTACC 1 cut(s) 426
AccB1I GGYRCC 1 cut(s) 426
AccB7I CCANNNNNTGG 1 cut(s) 171
AclWI GGATC 4 cut(s) 198, 369, 382, 873
AcoI YGGCCR 1 cut(s) 379
AcsI RAATTY 1 cut(s) 124
AcvI CACGTG 1 cut(s) 670
AdeI CACNNNGTG 1 cut(s) 696
AfaI GTAC 1 cut(s) 428
AfiI CCNNNNNNNGG 2 cut(s) 171, 388
AgeI ACCGGT 1 cut(s) 905
AgsI TTSAA 2 cut(s) 421, 815
AjnI CCWGG 2 cut(s) 602, 779
AluBI AGCT 3 cut(s) 244, 445, 516
AluI AGCT 3 cut(s) 244, 445, 516
Alw21I GWGCWC 2 cut(s) 314, 447
Alw26I GTCTC 2 cut(s) 31, 155
AlwI GGATC 4 cut(s) 198, 369, 382, 873
Ama87I CYCGRG 2 cut(s) 260, 753
AoxI GGCC 1 cut(s) 379
ApeKI GCWGC 1 cut(s) 241
ApoI RAATTY 1 cut(s) 124
AsiGI ACCGGT 1 cut(s) 905
Asp700I GAANNNNTTC 2 cut(s) 504, 819
Asp718I GGTACC 1 cut(s) 426
AspLEI GCGC 1 cut(s) 109
AspS9I GGNCC 1 cut(s) 851
AsuC2I CCSGG 2 cut(s) 261, 262
AsuHPI GGTGA 4 cut(s) 407, 452, 742, 797
AvaI CYCGRG 2 cut(s) 260, 753
AvaII GGWCC 1 cut(s) 851
BaeGI GKGCMC 1 cut(s) 275
BamHI GGATCC 1 cut(s) 374
BanI GGYRCC 1 cut(s) 426
BanII GRGCYC 2 cut(s) 259, 447
BbrPI CACGTG 1 cut(s) 670
BbsI GAAGAC 1 cut(s) 45
Bbv12I GWGCWC 2 cut(s) 314, 447
BbvI GCAGC 1 cut(s) 253
BccI CCATC 5 cut(s) 19, 262, 272, 532, 592
BcgI CGANNNNNNTGC 2 cut(s) 381, 415
BciT130I CCWGG 2 cut(s) 604, 781
BcnI CCSGG 2 cut(s) 261, 262
BcoDI GTCTC 2 cut(s) 31, 155
BfuAI ACCTGC 1 cut(s) 383
BglII AGATCT 1 cut(s) 368
BisI GCNGC 4 cut(s) 132, 176, 179, 242
BlsI GCNGC 4 cut(s) 133, 177, 180, 243
Bme1390I CCNGG 4 cut(s) 261, 262, 604, 781
Bme18I GGWCC 1 cut(s) 851
BmeT110I CYCGRG 2 cut(s) 260, 753
BmgT120I GGNCC 1 cut(s) 851
BmiI GGNNCC 5 cut(s) 258, 376, 428, 582, 853
BmrFI CCNGG 4 cut(s) 261, 262, 604, 781
BmsI GCATC 1 cut(s) 618
BpiI GAAGAC 1 cut(s) 45
BpuEI CTTGAG 1 cut(s) 55
BpuMI CCSGG 2 cut(s) 261, 262
BsaAI YACGTR 1 cut(s) 670
BsaBI GATNNNNATC 1 cut(s) 373
BsaI GGTCTC 2 cut(s) 31, 155
BsaJI CCNNGG 5 cut(s) 186, 260, 299, 603, 780
BsaWI WCCGGW 1 cut(s) 905
BsaXI ACNNNNNCTCC 2 cut(s) 343, 373
Bsc4I CCNNNNNNNGG 2 cut(s) 171, 388
Bse118I RCCGGY 2 cut(s) 476, 905
Bse8I GATNNNNATC 1 cut(s) 373
BseBI CCWGG 2 cut(s) 604, 781
BseDI CCNNGG 5 cut(s) 186, 260, 299, 603, 780
BseGI GGATG 5 cut(s) 273, 362, 543, 729, 838
BseJI GATNNNNATC 1 cut(s) 373
BseLI CCNNNNNNNGG 2 cut(s) 171, 388
BseMII CTCAG 1 cut(s) 110
BseRI GAGGAG 1 cut(s) 133
BseSI GKGCMC 1 cut(s) 275
BseX3I CGGCCG 1 cut(s) 379
BseXI GCAGC 1 cut(s) 253
BsgI GTGCAG 1 cut(s) 158
Bsh1285I CGRYCG 1 cut(s) 382
BshFI GGCC 1 cut(s) 381
BshNI GGYRCC 1 cut(s) 426
BshTI ACCGGT 1 cut(s) 905
BsiEI CGRYCG 1 cut(s) 382
BsiHKAI GWGCWC 2 cut(s) 314, 447
BsiHKCI CYCGRG 2 cut(s) 260, 753
BsiSI CCGG 5 cut(s) 15, 261, 378, 477, 906
BslI CCNNNNNNNGG 2 cut(s) 171, 388
BsmAI GTCTC 2 cut(s) 31, 155
BsnI GGCC 1 cut(s) 381
Bso31I GGTCTC 2 cut(s) 31, 155
BsoBI CYCGRG 2 cut(s) 260, 753
Bsp1286I GDGCHC 4 cut(s) 259, 275, 314, 447
Bsp143I GATC 7 cut(s) 45, 167, 190, 204, 368, 374, 865
Bsp19I CCATGG 1 cut(s) 186
BspANI GGCC 1 cut(s) 381
BspCNI CTCAG 1 cut(s) 109
BspLI GGNNCC 5 cut(s) 258, 376, 428, 582, 853
BspMI ACCTGC 1 cut(s) 383
BspPI GGATC 4 cut(s) 198, 369, 382, 873
BspT107I GGYRCC 1 cut(s) 426
BspTNI GGTCTC 2 cut(s) 31, 155
BsrFI RCCGGY 2 cut(s) 476, 905
BssAI RCCGGY 2 cut(s) 476, 905
BssECI CCNNGG 5 cut(s) 186, 260, 299, 603, 780
BssMI GATC 7 cut(s) 45, 167, 190, 204, 368, 374, 865
BssT1I CCWWGG 1 cut(s) 186
Bst2UI CCWGG 2 cut(s) 604, 781
Bst4CI ACNGT 1 cut(s) 694
Bst6I CTCTTC 1 cut(s) 695
BstAPI GCANNNNNTGC 1 cut(s) 11
BstBAI YACGTR 1 cut(s) 670
BstC8I GCNNGC 6 cut(s) 111, 141, 183, 411, 478, 482
BstDEI CTNAG 1 cut(s) 96
BstDSI CCRYGG 1 cut(s) 186
BstF5I GGATG 5 cut(s) 273, 362, 543, 729, 838
BstHHI GCGC 1 cut(s) 109
BstKTI GATC 7 cut(s) 48, 170, 193, 207, 371, 377, 868
BstMAI GTCTC 2 cut(s) 31, 155
BstMBI GATC 7 cut(s) 45, 167, 190, 204, 368, 374, 865
BstMCI CGRYCG 1 cut(s) 382
BstMWI GCNNNNNNNGC 4 cut(s) 11, 140, 238, 451
BstNI CCWGG 2 cut(s) 604, 781
BstSCI CCNGG 4 cut(s) 259, 260, 602, 779
BstSLI GKGCMC 1 cut(s) 275
BstV1I GCAGC 1 cut(s) 253
BstV2I GAAGAC 1 cut(s) 45
BstX2I RGATCY 3 cut(s) 368, 374, 865
BstXI CCANNNNNNTGG 2 cut(s) 591, 862
BstYI RGATCY 3 cut(s) 368, 374, 865
BstZI CGGCCG 1 cut(s) 379
BsuRI GGCC 1 cut(s) 381
BtgI CCRYGG 1 cut(s) 186
BtgZI GCGATG 1 cut(s) 247
BtsCI GGATG 5 cut(s) 273, 362, 543, 729, 838
BveI ACCTGC 1 cut(s) 383
Cac8I GCNNGC 6 cut(s) 111, 141, 183, 411, 478, 482
CfoI GCGC 1 cut(s) 109
Cfr10I RCCGGY 2 cut(s) 476, 905
Cfr13I GGNCC 1 cut(s) 851
Cfr9I CCCGGG 1 cut(s) 260
CseI GACGC 1 cut(s) 758
Csp6I GTAC 1 cut(s) 427
CspAI ACCGGT 1 cut(s) 905
CspCI CAANNNNNGTGG 2 cut(s) 443, 478
CviAII CATG 4 cut(s) 79, 187, 548, 829
CviQI GTAC 1 cut(s) 427
DdeI CTNAG 1 cut(s) 96
DpnI GATC 7 cut(s) 47, 169, 192, 206, 370, 376, 867
DpnII GATC 7 cut(s) 45, 167, 190, 204, 368, 374, 865
DraIII CACNNNGTG 1 cut(s) 696
EaeI YGGCCR 1 cut(s) 379
EagI CGGCCG 1 cut(s) 379
Eam1104I CTCTTC 1 cut(s) 695
EarI CTCTTC 1 cut(s) 695
EciI GGCGGA 1 cut(s) 808
Ecl136II GAGCTC 1 cut(s) 445
EclXI CGGCCG 1 cut(s) 379
Eco130I CCWWGG 1 cut(s) 186
Eco24I GRGCYC 2 cut(s) 259, 447
Eco31I GGTCTC 2 cut(s) 31, 155
Eco47I GGWCC 1 cut(s) 851
Eco52I CGGCCG 1 cut(s) 379
Eco53kI GAGCTC 1 cut(s) 445
Eco72I CACGTG 1 cut(s) 670
Eco88I CYCGRG 2 cut(s) 260, 753
EcoICRI GAGCTC 1 cut(s) 445
EcoRI GAATTC 1 cut(s) 124
EcoRII CCWGG 2 cut(s) 602, 779
EcoT14I CCWWGG 1 cut(s) 186
EcoT38I GRGCYC 2 cut(s) 259, 447
ErhI CCWWGG 1 cut(s) 186
FaeI CATG 4 cut(s) 82, 190, 551, 832
FatI CATG 4 cut(s) 78, 186, 547, 828
FauI CCCGC 2 cut(s) 106, 473
Fnu4HI GCNGC 4 cut(s) 132, 176, 179, 242
FokI GGATG 5 cut(s) 280, 369, 550, 736, 845
FriOI GRGCYC 2 cut(s) 259, 447
Fsp4HI GCNGC 4 cut(s) 132, 176, 179, 242
GlaI GCGC 1 cut(s) 108
GluI GCNGC 4 cut(s) 132, 176, 179, 242
HaeIII GGCC 1 cut(s) 381
HapII CCGG 5 cut(s) 15, 261, 378, 477, 906
HgaI GACGC 1 cut(s) 758
HhaI GCGC 1 cut(s) 109
Hin1II CATG 4 cut(s) 82, 190, 551, 832
Hin6I GCGC 1 cut(s) 107
HinP1I GCGC 1 cut(s) 107
HinfI GANTC 2 cut(s) 82, 398
HpaII CCGG 5 cut(s) 15, 261, 378, 477, 906
HphI GGTGA 4 cut(s) 407, 452, 742, 797
Hpy188I TCNGA 3 cut(s) 160, 216, 300
Hpy188III TCNNGA 6 cut(s) 34, 366, 372, 721, 746, 755
Hpy99I CGWCG 1 cut(s) 387
HpyAV CCTTC 3 cut(s) 51, 443, 527
HpyCH4III ACNGT 1 cut(s) 694
HpyCH4IV ACGT 1 cut(s) 669
HpyCH4V TGCA 2 cut(s) 139, 241
HpyF10VI GCNNNNNNNGC 4 cut(s) 11, 140, 238, 451
HpyF3I CTNAG 1 cut(s) 96
HpySE526I ACGT 1 cut(s) 669
Hsp92II CATG 4 cut(s) 82, 190, 551, 832
HspAI GCGC 1 cut(s) 107
KpnI GGTACC 1 cut(s) 430
KroI GCCGGC 1 cut(s) 476
KroNI GCCGGC 1 cut(s) 478
Kzo9I GATC 7 cut(s) 45, 167, 190, 204, 368, 374, 865
LmnI GCTCC 4 cut(s) 147, 262, 285, 580
Lsp1109I GCAGC 1 cut(s) 253
LweI GCATC 1 cut(s) 618
MaeII ACGT 1 cut(s) 669
MaeIII GTNAC 5 cut(s) 596, 730, 746, 835, 845
MalI GATC 7 cut(s) 47, 169, 192, 206, 370, 376, 867
MboI GATC 7 cut(s) 45, 167, 190, 204, 368, 374, 865
MboII GAAGA 3 cut(s) 45, 77, 712
MflI RGATCY 3 cut(s) 368, 374, 865
MhlI GDGCHC 4 cut(s) 259, 275, 314, 447
MluCI AATT 5 cut(s) 124, 318, 486, 621, 799
MroNI GCCGGC 1 cut(s) 476
MroXI GAANNNNTTC 2 cut(s) 504, 819
MslI CAYNNNNRTG 2 cut(s) 589, 860
MspA1I CMGCKG 1 cut(s) 244
MspI CCGG 5 cut(s) 15, 261, 378, 477, 906
MspR9I CCNGG 4 cut(s) 261, 262, 604, 781
MvaI CCWGG 2 cut(s) 604, 781
MwoI GCNNNNNNNGC 4 cut(s) 11, 140, 238, 451
NaeI GCCGGC 1 cut(s) 478
NciI CCSGG 2 cut(s) 261, 262
NcoI CCATGG 1 cut(s) 186
NdeII GATC 7 cut(s) 45, 167, 190, 204, 368, 374, 865
NgoMIV GCCGGC 1 cut(s) 476
NlaIII CATG 4 cut(s) 82, 190, 551, 832
NlaIV GGNNCC 5 cut(s) 258, 376, 428, 582, 853
NmeAIII GCCGAG 2 cut(s) 208, 293
NmuCI GTSAC 3 cut(s) 730, 746, 845
PaqCI CACCTGC 1 cut(s) 383
PdiI GCCGGC 1 cut(s) 478
PdmI GAANNNNTTC 2 cut(s) 504, 819
PfeI GAWTC 2 cut(s) 82, 398
PflMI CCANNNNNTGG 1 cut(s) 171
PinAI ACCGGT 1 cut(s) 905
PkrI GCNGC 4 cut(s) 133, 177, 180, 243
PmaCI CACGTG 1 cut(s) 670
PmlI CACGTG 1 cut(s) 670
Ppu21I YACGTR 1 cut(s) 670
PsiI TTATAA 1 cut(s) 620
Psp124BI GAGCTC 1 cut(s) 447
Psp6I CCWGG 2 cut(s) 602, 779
PspCI CACGTG 1 cut(s) 670
PspGI CCWGG 2 cut(s) 602, 779
PspN4I GGNNCC 5 cut(s) 258, 376, 428, 582, 853
PspPI GGNCC 1 cut(s) 851
PsuI RGATCY 3 cut(s) 368, 374, 865
PvuII CAGCTG 1 cut(s) 244
RsaI GTAC 1 cut(s) 428
RsaNI GTAC 1 cut(s) 427
RseI CAYNNNNRTG 2 cut(s) 589, 860
SacI GAGCTC 1 cut(s) 447
SatI GCNGC 4 cut(s) 132, 176, 179, 242
Sau3AI GATC 7 cut(s) 45, 167, 190, 204, 368, 374, 865
Sau96I GGNCC 1 cut(s) 851
ScrFI CCNGG 4 cut(s) 261, 262, 604, 781
SduI GDGCHC 4 cut(s) 259, 275, 314, 447
SfaNI GCATC 1 cut(s) 618
SinI GGWCC 1 cut(s) 851
SmaI CCCGGG 1 cut(s) 262
SmiMI CAYNNNNRTG 2 cut(s) 589, 860
SmlI CTYRAG 1 cut(s) 34
SmoI CTYRAG 1 cut(s) 34
Sse9I AATT 5 cut(s) 124, 318, 486, 621, 799
SstI GAGCTC 1 cut(s) 447
StyD4I CCNGG 4 cut(s) 259, 260, 602, 779
StyI CCWWGG 1 cut(s) 186
TaaI ACNGT 1 cut(s) 694
TaiI ACGT 1 cut(s) 672
TaqI TCGA 2 cut(s) 44, 447
TasI AATT 5 cut(s) 124, 318, 486, 621, 799
TauI GCSGC 3 cut(s) 134, 178, 181
TfiI GAWTC 2 cut(s) 82, 398
TseFI GTSAC 3 cut(s) 730, 746, 845
TseI GCWGC 1 cut(s) 241
Tsp45I GTSAC 3 cut(s) 730, 746, 845
TspDTI ATGAA 1 cut(s) 817
TspGWI ACGGA 2 cut(s) 661, 864
TspMI CCCGGG 1 cut(s) 260
Van91I CCANNNNNTGG 1 cut(s) 171
VpaK11BI GGWCC 1 cut(s) 851
XapI RAATTY 1 cut(s) 124
XcmI CCANNNNNNNNNTGG 1 cut(s) 193
XmaI CCCGGG 1 cut(s) 260
XmnI GAANNNNTTC 2 cut(s) 504, 819
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.