RchiOBHm_Chr4g0435001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0001093
Physical Location & Seq
Forward (+)
58599526 .. 58600880
1355 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ40344

Sequence Viewer

Length: 1020 bp
ATGGAAATCCCAGTGGTGAATAGAATAAGCGATTTCGAGTTGCCCAGCCCGTCTTTCCCGTCGCAGGCTTTCTCCATTTCCGGAATCGAAAAGGTCTACAGTGTCTGGACATGGGGCGCTCTAATACTCGCCGTAATAGCTTCCTTCGGCACCATCATCACTAGAATCAACTTTGTTATCATCCGACGGCTCCGCCACAAGACCGCCGAGCCTCTCTGCCTCCGACAAGAAGACGATTTCTCCGATATCGACGACGACGATGACGATGACGAAACATATTCCGTTTCCACGTCATCGTCGGTTTCCGACGATGACGAGGAAGAAGAAGAGGACGACAGAAGAGACGAAGATTTCAATGTCTCGGCAGCTGACCGGGGACGGAACCGTAATTTGAGGCTCCGCCGTGGCAGAAGCTTCGCGGGCTTGAACTTAAACCGGTTCTCTTGGTCCGACTTCGCCAGCGGCAAGAGCGTCGTCAAGCTCTGGGACAACTTGGCTTTAGGATTGGACCTTGATGACGACAGCGACGACGAATATTCCGGCACCGGCAGAACCGTCTCCGTCTACGACATGAACAAACAGAAGAAGATAAACTCCTTCTTCGCCGGCAGCTTCCAGGTCCCGGCGGCCGCCACGTCTTCGCGGTCCACGATTCTCACAGCTGACACGAACGCCTCCGGGCGCGTAGCCTTGGGCTTGTGGGACACGCGCGTGGGCAGCAGGATACCGGCGATGCTAGCCGAGTGGGGCCCGCAGATCGGGAGAATCGTCGGAGTGTCCTCGGGCGGCGTCGACAAGGTTTACGTCAAGGATGACGTTACGGGGGCGCTAATGGTCGGTGACGTGAGGAAAGTGGGAGCTCCGTTACGAAACGTAACGGATGCCGACGTGAGCGATACGTGGTGGGACGCCGATGCGGTTATGGTCTCGGACGAGTGTTTTGATGAGTCGGCCGCCGCGAGTGATTGCGACTCGGCCGTGACTCGGTGTTGTAGCGCGGTTAGGTCTTATCTGTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

339

Amino Acids

37.21

Weight (kDa)

4.39

Isoelectric Point (pI)

39.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 149, 542
AccI GTMKAC 3 cut(s) 96, 564, 792
AccII CGCG 7 cut(s) 419, 643, 684, 709, 711, 959, 998
AccIII TCCGGA 1 cut(s) 80
AcoI YGGCCR 3 cut(s) 627, 951, 975
AcyI GRCGYC 2 cut(s) 789, 909
AfiI CCNNNNNNNGG 4 cut(s) 64, 622, 758, 984
AgeI ACCGGT 1 cut(s) 435
AgsI TTSAA 2 cut(s) 355, 427
AjiI CACGTC 4 cut(s) 291, 636, 844, 889
AjnI CCWGG 1 cut(s) 615
AleI CACNNNNGTG 1 cut(s) 710
AluBI AGCT 7 cut(s) 140, 368, 414, 481, 612, 662, 860
AluI AGCT 7 cut(s) 140, 368, 414, 481, 612, 662, 860
Alw21I GWGCWC 1 cut(s) 862
Alw26I GTCTC 4 cut(s) 336, 364, 562, 931
AlwNI CAGNNNCTG 1 cut(s) 105
Ama87I CYCGRG 1 cut(s) 781
Aor13HI TCCGGA 1 cut(s) 80
AoxI GGCC 4 cut(s) 627, 748, 951, 975
ApaI GGGCCC 1 cut(s) 752
ApeKI GCWGC 3 cut(s) 365, 609, 717
ArsI GACNNNNNNTTYG 2 cut(s) 923, 955
AsiGI ACCGGT 1 cut(s) 435
AspLEI GCGC 5 cut(s) 119, 684, 711, 829, 998
AspS9I GGNCC 6 cut(s) 447, 508, 619, 645, 748, 749
AsuC2I CCSGG 3 cut(s) 374, 623, 679
AsuHPI GGTGA 2 cut(s) 28, 851
AsuNHI GCTAGC 1 cut(s) 736
AvaI CYCGRG 1 cut(s) 781
AvaII GGWCC 4 cut(s) 447, 508, 619, 645
BaeGI GKGCMC 1 cut(s) 752
BanI GGYRCC 2 cut(s) 149, 542
BanII GRGCYC 2 cut(s) 752, 862
BbsI GAAGAC 2 cut(s) 237, 630
Bbv12I GWGCWC 1 cut(s) 862
BbvI GCAGC 3 cut(s) 377, 621, 729
BccI CCATC 1 cut(s) 161
BceAI ACGGC 4 cut(s) 116, 203, 387, 962
BcgI CGANNNNNNTGC 4 cut(s) 397, 431, 454, 488
BciT130I CCWGG 1 cut(s) 617
BciVI GTATCC 1 cut(s) 717
BcnI CCSGG 3 cut(s) 374, 623, 679
BcoDI GTCTC 4 cut(s) 336, 364, 562, 931
BfaI CTAG 2 cut(s) 162, 737
BfmI CTRYAG 1 cut(s) 97
BfoI RGCGCY 2 cut(s) 120, 830
BfuI GTATCC 1 cut(s) 717
BisI GCNGC 9 cut(s) 366, 463, 610, 627, 630, 718, 787, 954, 957
BlsI GCNGC 9 cut(s) 367, 464, 611, 628, 631, 719, 788, 955, 958
Bme1390I CCNGG 4 cut(s) 374, 617, 623, 679
Bme18I GGWCC 4 cut(s) 447, 508, 619, 645
BmeT110I CYCGRG 1 cut(s) 781
BmgBI CACGTC 4 cut(s) 291, 636, 844, 889
BmgT120I GGNCC 6 cut(s) 447, 508, 619, 645, 748, 749
BmiI GGNNCC 8 cut(s) 151, 191, 383, 398, 544, 621, 749, 750
BmrFI CCNGG 4 cut(s) 374, 617, 623, 679
BmrI ACTGGG 1 cut(s) 5
BmsI GCATC 3 cut(s) 723, 871, 904
BmtI GCTAGC 1 cut(s) 740
BmuI ACTGGG 1 cut(s) 5
BpiI GAAGAC 2 cut(s) 237, 630
BpuMI CCSGG 3 cut(s) 374, 623, 679
BsaAI YACGTR 1 cut(s) 900
BsaHI GRCGYC 2 cut(s) 789, 909
BsaI GGTCTC 1 cut(s) 931
BsaJI CCNNGG 4 cut(s) 373, 403, 690, 780
BsaWI WCCGGW 2 cut(s) 80, 435
BsaXI ACNNNNNCTCC 2 cut(s) 224, 254
Bsc4I CCNNNNNNNGG 4 cut(s) 64, 622, 758, 984
Bse118I RCCGGY 4 cut(s) 435, 545, 605, 727
Bse1I ACTGG 1 cut(s) 11
BseAI TCCGGA 1 cut(s) 80
BseBI CCWGG 1 cut(s) 617
BseDI CCNNGG 4 cut(s) 373, 403, 690, 780
BseGI GGATG 3 cut(s) 180, 817, 886
BseLI CCNNNNNNNGG 4 cut(s) 64, 622, 758, 984
BseNI ACTGG 1 cut(s) 11
BseSI GKGCMC 1 cut(s) 752
BseX3I CGGCCG 3 cut(s) 627, 951, 975
BseXI GCAGC 3 cut(s) 377, 621, 729
BseYI CCCAGC 1 cut(s) 44
Bsh1236I CGCG 7 cut(s) 419, 643, 684, 709, 711, 959, 998
Bsh1285I CGRYCG 3 cut(s) 630, 954, 978
BshFI GGCC 4 cut(s) 629, 750, 953, 977
BshNI GGYRCC 2 cut(s) 149, 542
BshTI ACCGGT 1 cut(s) 435
BsiEI CGRYCG 3 cut(s) 630, 954, 978
BsiHKAI GWGCWC 1 cut(s) 862
BsiHKCI CYCGRG 1 cut(s) 781
BsiSI CCGG 9 cut(s) 81, 373, 436, 540, 546, 606, 623, 678, 728
BslFI GGGAC 5 cut(s) 390, 500, 605, 716, 920
BslI CCNNNNNNNGG 4 cut(s) 64, 622, 758, 984
BsmAI GTCTC 4 cut(s) 336, 364, 562, 931
BsmBI CGTCTC 2 cut(s) 336, 562
BsmFI GGGAC 5 cut(s) 390, 500, 605, 716, 920
BsnI GGCC 4 cut(s) 629, 750, 953, 977
Bso31I GGTCTC 1 cut(s) 931
BsoBI CYCGRG 1 cut(s) 781
Bsp120I GGGCCC 1 cut(s) 748
Bsp1286I GDGCHC 2 cut(s) 752, 862
Bsp13I TCCGGA 1 cut(s) 80
Bsp143I GATC 1 cut(s) 756
BspANI GGCC 4 cut(s) 629, 750, 953, 977
BspEI TCCGGA 1 cut(s) 80
BspFNI CGCG 7 cut(s) 419, 643, 684, 709, 711, 959, 998
BspLI GGNNCC 8 cut(s) 151, 191, 383, 398, 544, 621, 749, 750
BspOI GCTAGC 1 cut(s) 740
BspT107I GGYRCC 2 cut(s) 149, 542
BspTNI GGTCTC 1 cut(s) 931
BsrFI RCCGGY 4 cut(s) 435, 545, 605, 727
BsrI ACTGG 1 cut(s) 11
BssAI RCCGGY 4 cut(s) 435, 545, 605, 727
BssECI CCNNGG 4 cut(s) 373, 403, 690, 780
BssMI GATC 1 cut(s) 756
BssNI GRCGYC 2 cut(s) 789, 909
BssT1I CCWWGG 1 cut(s) 690
Bst2UI CCWGG 1 cut(s) 617
Bst4CI ACNGT 3 cut(s) 101, 386, 556
Bst6I CTCTTC 2 cut(s) 321, 334
BstACI GRCGYC 2 cut(s) 789, 909
BstBAI YACGTR 1 cut(s) 900
BstC8I GCNNGC 6 cut(s) 66, 421, 460, 607, 738, 752
BstDSI CCRYGG 1 cut(s) 403
BstF5I GGATG 3 cut(s) 180, 817, 886
BstFNI CGCG 7 cut(s) 419, 643, 684, 709, 711, 959, 998
BstH2I RGCGCY 2 cut(s) 120, 830
BstHHI GCGC 5 cut(s) 119, 684, 711, 829, 998
BstKTI GATC 1 cut(s) 759
BstMAI GTCTC 4 cut(s) 336, 364, 562, 931
BstMBI GATC 1 cut(s) 756
BstMCI CGRYCG 3 cut(s) 630, 954, 978
BstMWI GCNNNNNNNGC 5 cut(s) 137, 420, 468, 717, 737
BstNI CCWGG 1 cut(s) 617
BstSCI CCNGG 4 cut(s) 372, 615, 621, 677
BstSFI CTRYAG 1 cut(s) 97
BstSLI GKGCMC 1 cut(s) 752
BstUI CGCG 7 cut(s) 419, 643, 684, 709, 711, 959, 998
BstV1I GCAGC 3 cut(s) 377, 621, 729
BstV2I GAAGAC 2 cut(s) 237, 630
BstZI CGGCCG 3 cut(s) 627, 951, 975
BsuI GTATCC 1 cut(s) 717
BsuRI GGCC 4 cut(s) 629, 750, 953, 977
BtgI CCRYGG 1 cut(s) 403
BtgZI GCGATG 1 cut(s) 746
BtrI CACGTC 4 cut(s) 291, 636, 844, 889
BtsCI GGATG 3 cut(s) 180, 817, 886
BtsIMutI CAGTG 2 cut(s) 18, 106
Cac8I GCNNGC 6 cut(s) 66, 421, 460, 607, 738, 752
CaiI CAGNNNCTG 1 cut(s) 105
CciNI GCGGCCGC 1 cut(s) 627
CfoI GCGC 5 cut(s) 119, 684, 711, 829, 998
Cfr10I RCCGGY 4 cut(s) 435, 545, 605, 727
Cfr13I GGNCC 6 cut(s) 447, 508, 619, 645, 748, 749
CseI GACGC 3 cut(s) 460, 778, 917
CspAI ACCGGT 1 cut(s) 435
CviAII CATG 2 cut(s) 111, 571
DpnI GATC 1 cut(s) 758
DpnII GATC 1 cut(s) 756
EaeI YGGCCR 3 cut(s) 627, 951, 975
EagI CGGCCG 3 cut(s) 627, 951, 975
Eam1104I CTCTTC 2 cut(s) 321, 334
EarI CTCTTC 2 cut(s) 321, 334
EciI GGCGGA 2 cut(s) 182, 389
Ecl136II GAGCTC 1 cut(s) 860
EclXI CGGCCG 3 cut(s) 627, 951, 975
Eco130I CCWWGG 1 cut(s) 690
Eco24I GRGCYC 2 cut(s) 752, 862
Eco31I GGTCTC 1 cut(s) 931
Eco32I GATATC 1 cut(s) 247
Eco47I GGWCC 4 cut(s) 447, 508, 619, 645
Eco52I CGGCCG 3 cut(s) 627, 951, 975
Eco53kI GAGCTC 1 cut(s) 860
Eco88I CYCGRG 1 cut(s) 781
EcoICRI GAGCTC 1 cut(s) 860
EcoO109I RGGNCCY 2 cut(s) 619, 748
EcoRII CCWGG 1 cut(s) 615
EcoRV GATATC 1 cut(s) 247
EcoT14I CCWWGG 1 cut(s) 690
EcoT38I GRGCYC 2 cut(s) 752, 862
ErhI CCWWGG 1 cut(s) 690
Esp3I CGTCTC 2 cut(s) 336, 562
FaeI CATG 2 cut(s) 114, 574
FaiI YATR 5 cut(s) 112, 277, 572, 923, 1018
FaqI GGGAC 5 cut(s) 390, 500, 605, 716, 920
FatI CATG 2 cut(s) 110, 570
FauI CCCGC 2 cut(s) 412, 759
FblI GTMKAC 3 cut(s) 96, 564, 792
Fnu4HI GCNGC 9 cut(s) 366, 463, 610, 627, 630, 718, 787, 954, 957
FokI GGATG 3 cut(s) 167, 824, 893
FriOI GRGCYC 2 cut(s) 752, 862
Fsp4HI GCNGC 9 cut(s) 366, 463, 610, 627, 630, 718, 787, 954, 957
FspBI CTAG 2 cut(s) 162, 737
GlaI GCGC 5 cut(s) 118, 683, 710, 828, 997
GluI GCNGC 9 cut(s) 366, 463, 610, 627, 630, 718, 787, 954, 957
GsaI CCCAGC 1 cut(s) 48
HaeII RGCGCY 2 cut(s) 120, 830
HaeIII GGCC 4 cut(s) 629, 750, 953, 977
HapII CCGG 9 cut(s) 81, 373, 436, 540, 546, 606, 623, 678, 728
HgaI GACGC 3 cut(s) 460, 778, 917
HhaI GCGC 5 cut(s) 119, 684, 711, 829, 998
Hin1I GRCGYC 2 cut(s) 789, 909
Hin1II CATG 2 cut(s) 114, 574
Hin6I GCGC 5 cut(s) 117, 682, 709, 827, 996
HinP1I GCGC 5 cut(s) 117, 682, 709, 827, 996
HincII GTYRAC 1 cut(s) 793
HindII GTYRAC 1 cut(s) 793
HindIII AAGCTT 1 cut(s) 412
HinfI GANTC 7 cut(s) 84, 165, 652, 765, 947, 971, 982
HpaII CCGG 9 cut(s) 81, 373, 436, 540, 546, 606, 623, 678, 728
HphI GGTGA 2 cut(s) 28, 851
Hpy166II GTNNAC 5 cut(s) 97, 565, 648, 793, 802
Hpy188I TCNGA 7 cut(s) 185, 224, 244, 307, 451, 773, 931
Hpy188III TCNNGA 3 cut(s) 81, 106, 760
Hpy8I GTNNAC 5 cut(s) 97, 565, 648, 793, 802
HpyAV CCTTC 2 cut(s) 154, 607
HpyCH4III ACNGT 3 cut(s) 101, 386, 556
HpyCH4IV ACGT 8 cut(s) 290, 635, 804, 816, 843, 873, 888, 899
HpyF10VI GCNNNNNNNGC 5 cut(s) 137, 420, 468, 717, 737
HpySE526I ACGT 8 cut(s) 290, 635, 804, 816, 843, 873, 888, 899
Hsp92I GRCGYC 2 cut(s) 789, 909
Hsp92II CATG 2 cut(s) 114, 574
HspAI GCGC 5 cut(s) 117, 682, 709, 827, 996
Kpn2I TCCGGA 1 cut(s) 80
KroI GCCGGC 1 cut(s) 605
KroNI GCCGGC 1 cut(s) 607
Kzo9I GATC 1 cut(s) 756
LmnI GCTCC 4 cut(s) 195, 402, 857, 865
Lsp1109I GCAGC 3 cut(s) 377, 621, 729
LweI GCATC 3 cut(s) 723, 871, 904
MaeI CTAG 2 cut(s) 162, 737
MaeII ACGT 8 cut(s) 290, 635, 804, 816, 843, 873, 888, 899
MaeIII GTNAC 5 cut(s) 817, 839, 864, 874, 979
MalI GATC 1 cut(s) 758
MboI GATC 1 cut(s) 756
MhlI GDGCHC 2 cut(s) 752, 862
MluCI AATT 1 cut(s) 388
MlyI GAGTC 3 cut(s) 956, 965, 976
MmeI TCCRAC 5 cut(s) 208, 247, 330, 474, 751
MnlI CCTC 8 cut(s) 222, 230, 310, 322, 387, 685, 790, 840
MroI TCCGGA 1 cut(s) 80
MroNI GCCGGC 1 cut(s) 605
MseI TTAA 1 cut(s) 431
MslI CAYNNNNRTG 1 cut(s) 710
MspA1I CMGCKG 3 cut(s) 368, 462, 662
MspI CCGG 9 cut(s) 81, 373, 436, 540, 546, 606, 623, 678, 728
MspR9I CCNGG 4 cut(s) 374, 617, 623, 679
MvaI CCWGG 1 cut(s) 617
MvnI CGCG 7 cut(s) 419, 643, 684, 709, 711, 959, 998
MwoI GCNNNNNNNGC 5 cut(s) 137, 420, 468, 717, 737
NaeI GCCGGC 1 cut(s) 607
NciI CCSGG 3 cut(s) 374, 623, 679
NdeII GATC 1 cut(s) 756
NgoMIV GCCGGC 1 cut(s) 605
NheI GCTAGC 1 cut(s) 736
NlaIII CATG 2 cut(s) 114, 574
NlaIV GGNNCC 8 cut(s) 151, 191, 383, 398, 544, 621, 749, 750
NmeAIII GCCGAG 4 cut(s) 232, 341, 766, 953
NmuCI GTSAC 2 cut(s) 839, 979
NotI GCGGCCGC 1 cut(s) 627
OliI CACNNNNGTG 1 cut(s) 710
PcsI WCGNNNNNNNCGW 7 cut(s) 240, 255, 261, 525, 647, 765, 956
PdiI GCCGGC 1 cut(s) 607
PfeI GAWTC 4 cut(s) 84, 165, 652, 765
PinAI ACCGGT 1 cut(s) 435
PkrI GCNGC 9 cut(s) 367, 464, 611, 628, 631, 719, 788, 955, 958
PleI GAGTC 3 cut(s) 955, 965, 976
PpsI GAGTC 3 cut(s) 955, 965, 976
Ppu21I YACGTR 1 cut(s) 900
PpuMI RGGWCCY 1 cut(s) 619
Psp124BI GAGCTC 1 cut(s) 862
Psp5II RGGWCCY 1 cut(s) 619
Psp6I CCWGG 1 cut(s) 615
PspFI CCCAGC 1 cut(s) 44
PspGI CCWGG 1 cut(s) 615
PspN4I GGNNCC 8 cut(s) 151, 191, 383, 398, 544, 621, 749, 750
PspOMI GGGCCC 1 cut(s) 748
PspPI GGNCC 6 cut(s) 447, 508, 619, 645, 748, 749
PspPPI RGGWCCY 1 cut(s) 619
PstNI CAGNNNCTG 1 cut(s) 105
PvuII CAGCTG 2 cut(s) 368, 662
RseI CAYNNNNRTG 1 cut(s) 710
SacI GAGCTC 1 cut(s) 862
SalI GTCGAC 1 cut(s) 791
SaqAI TTAA 1 cut(s) 431
SatI GCNGC 9 cut(s) 366, 463, 610, 627, 630, 718, 787, 954, 957
Sau3AI GATC 1 cut(s) 756
Sau96I GGNCC 6 cut(s) 447, 508, 619, 645, 748, 749
SchI GAGTC 3 cut(s) 956, 965, 976
ScrFI CCNGG 4 cut(s) 374, 617, 623, 679
SduI GDGCHC 2 cut(s) 752, 862
SfaNI GCATC 3 cut(s) 723, 871, 904
SfcI CTRYAG 1 cut(s) 97
SinI GGWCC 4 cut(s) 447, 508, 619, 645
SmiMI CAYNNNNRTG 1 cut(s) 710
Sse9I AATT 1 cut(s) 388
SspI AATATT 1 cut(s) 536
SspMI CTAG 2 cut(s) 162, 737
SstI GAGCTC 1 cut(s) 862
StyD4I CCNGG 4 cut(s) 372, 615, 621, 677
StyI CCWWGG 1 cut(s) 690
TaaI ACNGT 3 cut(s) 101, 386, 556
TaiI ACGT 8 cut(s) 293, 638, 807, 819, 846, 876, 891, 902
TaqI TCGA 4 cut(s) 36, 87, 249, 792
TasI AATT 1 cut(s) 388
TauI GCSGC 6 cut(s) 465, 629, 632, 789, 956, 959
TfiI GAWTC 4 cut(s) 84, 165, 652, 765
Tru1I TTAA 1 cut(s) 431
Tru9I TTAA 1 cut(s) 431
TscAI CASTG 2 cut(s) 18, 106
TseFI GTSAC 2 cut(s) 839, 979
TseI GCWGC 3 cut(s) 365, 609, 717
Tsp45I GTSAC 2 cut(s) 839, 979
TspDTI ATGAA 1 cut(s) 587
TspGWI ACGGA 5 cut(s) 271, 394, 550, 852, 893
TspRI CASTG 2 cut(s) 18, 106
VpaK11BI GGWCC 4 cut(s) 447, 508, 619, 645
XmiI GTMKAC 3 cut(s) 96, 564, 792
XspI CTAG 2 cut(s) 162, 737
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.