Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0001093

Physical Location & Seq

Genomic Coordinates Forward (+)

10538393 .. 10539289

Gene Structure 897 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g18320.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGGATGGAAAGAGGAAGTTTGCAGGTGGTTGGTGGTCTGATACCTGTTGGCTGGTATGGATGGTAGAGCGGGCTAGAGCGGCGGCGATTTCAAATTGGCTGATGGATCATCGATGTGGAGTGGTAGCGCATGGCTGGTGGTGGACCGAAGATGGGCAGGTCGAGACGGAGCCATTTTTCTTGGGTTGGTTTGACCAAATCTGGGTTCGGTTGCACAGTTTCAATTTGTGGAAGGACTGCGTTGGAGGTTGCGTTGCCTTTTTATGGCGAGAAGCGAAGGTTGGAAGGTTGCCGGCGATAGCTCGACCAAGGCGGCGGAGCAAGACTGCTAGTGCTCTGATGAGGTGGGCCAACGAAGGTTTAATAAGTCTCTCCTCTTTTGAGCGAGGGTTAGGGTGTTTTGGTTTGGTTGGTGTGCTACTTTGGTGGCGTCATACCTGGGGATTATGGTTTATCTCGGTGTTGGCTGGTTGTCAACATGTGGGTGGATTACCTTTGCACGTGGTCTGGTGGTCTTTAGACACGGTGTTGAAGAAGGATAATTGGCTCGGTTTATTGTTGGTGACAAGGTTGTATCGTGACTCTCAGGCTTTGGTAGCTCATGTTGAGCGTCAAATTTGGTTAGGGGTTGGGCCCTTTCGGCTCATGGATGTTGCTTTTAGTGACGGACCCGTAACTATGGATCTTGTTAGGAATGTGTGTTGTGGTGTAGGCATCATAACCGATCGTTCAATTGTGCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

248

Amino Acids

28.29

Weight (kDa)

9.04

Isoelectric Point (pI)

32.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001093)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G25400 AT1G25400 AT1G68440
fragaria_vesca	FvH4_4g27210 FvH4_5g09320 FvH4_5g18320 FvH4_5g36190 FvH4_5g36660 FvH4_6g02080 FvH4_6g18410 FvH4_6g37922 FvH4_6g48101
malus_domestica	MD13G1040500.v1.1 MD16G1041500.v1.1
prunus_persica	Prupe.1G312600_v2.0.a1
pyrus_communis	pycom13g03470 pycom16g03590
rosa_chinensis	RchiOBHm_Chr2g0089781 RchiOBHm_Chr2g0161601 RchiOBHm_Chr4g0435001 RchiOBHm_Chr5g0057351 RchiOBHm_Chr6g0279821 RchiOBHm_Chr7g0227101
rosa_laevigata	RLG00000006630 RLG00000007926
rosa_multiflora	Rmu_co7981798.1_g000001 Rmu_co8240437.1_g000001 Rmu_sc0000400.1_g000034 Rmu_sc0000869.1_g000026 Rmu_sc0001246.1_g000017 Rmu_sc0002430.1_g000001 Rmu_sc0004574.1_g000051 Rmu_sc0009868.1_g000002 Rmu_sc0010765.1_g000001
rosa_roxburghii	Rroxscaffold_1G00019050 Rroxscaffold_2G00088100 Rroxscaffold_5G00376170
rosa_rugosa	Rorug02G0108200 Rorug02G0398300 Rorug02G0435100 Rorug03G0104500 Rorug03G0112000 Rorug03G0209100 Rorug04G0021800 Rorug04G0169800 Rorug04G0281500 Rorug04G0390300 Rorug05G0263200 Rorug05G0281200 Rorug06G0472700 Rorug07G0039700 Rorug07G0207300
rosa_samantha	Rh4AG337000 Rh4BG161500 Rh4BG344900 Rh4CG359600 Rh4DG339400 Rh5DG431200
rosa_wichuraiana	Rw4G029380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	14
Acc36I	ACCTGC	2 cut(s)	14, 148
AccBSI	CCGCTC	2 cut(s)	70, 80
AciI	CCGC	5 cut(s)	70, 80, 83, 313, 316
AclWI	GGATC	2 cut(s)	114, 690
AcsI	RAATTY	1 cut(s)	615
AcvI	CACGTG	1 cut(s)	502
AcyI	GRCGYC	1 cut(s)	430
AfiI	CCNNNNNNNGG	3 cut(s)	153, 202, 264
AflIII	ACRYGT	1 cut(s)	478
AgsI	TTSAA	4 cut(s)	93, 223, 532, 732
AjnI	CCWGG	1 cut(s)	437
AjuI	GAANNNNNNNTTGG	4 cut(s)	189, 221, 264, 296
AluBI	AGCT	2 cut(s)	302, 599
AluI	AGCT	2 cut(s)	302, 599
Alw21I	GWGCWC	1 cut(s)	337
Alw26I	GTCTC	2 cut(s)	158, 374
AlwI	GGATC	2 cut(s)	114, 690
AoxI	GGCC	2 cut(s)	348, 632
ApaI	GGGCCC	1 cut(s)	636
ApoI	RAATTY	1 cut(s)	615
AspLEI	GCGC	1 cut(s)	130
AspS9I	GGNCC	5 cut(s)	144, 348, 632, 633, 668
AsuHPI	GGTGA	1 cut(s)	574
AvaII	GGWCC	2 cut(s)	144, 668
BaeGI	GKGCMC	1 cut(s)	636
BanII	GRGCYC	1 cut(s)	636
BbrPI	CACGTG	1 cut(s)	502
Bbv12I	GWGCWC	1 cut(s)	337
BccI	CCATC	3 cut(s)	55, 97, 146
BciT130I	CCWGG	1 cut(s)	439
BcoDI	GTCTC	2 cut(s)	158, 374
BfaI	CTAG	2 cut(s)	75, 330
BfuAI	ACCTGC	2 cut(s)	14, 148
BglI	GCCNNNNNGGC	1 cut(s)	640
BisI	GCNGC	3 cut(s)	81, 84, 314
BlsI	GCNGC	3 cut(s)	82, 85, 315
Bme1390I	CCNGG	1 cut(s)	439
Bme18I	GGWCC	2 cut(s)	144, 668
BmgT120I	GGNCC	5 cut(s)	144, 348, 632, 633, 668
BmiI	GGNNCC	3 cut(s)	171, 634, 670
BmrFI	CCNGG	1 cut(s)	439
BmsI	GCATC	1 cut(s)	723
Bsa29I	ATCGAT	1 cut(s)	112
BsaAI	YACGTR	1 cut(s)	502
BsaHI	GRCGYC	1 cut(s)	430
BsaJI	CCNNGG	2 cut(s)	308, 438
BsaXI	ACNNNNNCTCC	2 cut(s)	237, 267
Bsc4I	CCNNNNNNNGG	3 cut(s)	153, 202, 264
Bse118I	RCCGGY	1 cut(s)	292
BseBI	CCWGG	1 cut(s)	439
BseCI	ATCGAT	1 cut(s)	112
BseDI	CCNNGG	2 cut(s)	308, 438
BseGI	GGATG	3 cut(s)	10, 66, 655
BseLI	CCNNNNNNNGG	3 cut(s)	153, 202, 264
BseMII	CTCAG	1 cut(s)	599
BseRI	GAGGAG	1 cut(s)	364
BseSI	GKGCMC	1 cut(s)	636
Bsh1285I	CGRYCG	1 cut(s)	727
BshFI	GGCC	2 cut(s)	350, 634
BshVI	ATCGAT	1 cut(s)	112
BsiEI	CGRYCG	1 cut(s)	727
BsiHKAI	GWGCWC	1 cut(s)	337
BsiSI	CCGG	1 cut(s)	293
BslI	CCNNNNNNNGG	3 cut(s)	153, 202, 264
BsmAI	GTCTC	2 cut(s)	158, 374
BsmBI	CGTCTC	1 cut(s)	158
BsnI	GGCC	2 cut(s)	350, 634
Bsp120I	GGGCCC	1 cut(s)	632
Bsp1286I	GDGCHC	2 cut(s)	337, 636
Bsp143I	GATC	3 cut(s)	106, 682, 724
BspACI	CCGC	5 cut(s)	70, 80, 83, 313, 316
BspANI	GGCC	2 cut(s)	350, 634
BspCNI	CTCAG	1 cut(s)	598
BspDI	ATCGAT	1 cut(s)	112
BspLI	GGNNCC	3 cut(s)	171, 634, 670
BspMI	ACCTGC	2 cut(s)	14, 148
BspPI	GGATC	2 cut(s)	114, 690
BsrBI	CCGCTC	2 cut(s)	70, 80
BsrFI	RCCGGY	1 cut(s)	292
BssAI	RCCGGY	1 cut(s)	292
BssECI	CCNNGG	2 cut(s)	308, 438
BssMI	GATC	3 cut(s)	106, 682, 724
BssNI	GRCGYC	1 cut(s)	430
BssT1I	CCWWGG	1 cut(s)	308
Bst2UI	CCWGG	1 cut(s)	439
Bst4CI	ACNGT	2 cut(s)	218, 526
BstACI	GRCGYC	1 cut(s)	430
BstBAI	YACGTR	1 cut(s)	502
BstC8I	GCNNGC	2 cut(s)	72, 294
BstDEI	CTNAG	1 cut(s)	585
BstF5I	GGATG	3 cut(s)	10, 66, 655
BstHHI	GCGC	1 cut(s)	130
BstKTI	GATC	3 cut(s)	109, 685, 727
BstMAI	GTCTC	2 cut(s)	158, 374
BstMBI	GATC	3 cut(s)	106, 682, 724
BstMCI	CGRYCG	1 cut(s)	727
BstMWI	GCNNNNNNNGC	3 cut(s)	80, 596, 640
BstNI	CCWGG	1 cut(s)	439
BstNSI	RCATGY	1 cut(s)	482
BstSCI	CCNGG	1 cut(s)	437
BstSLI	GKGCMC	1 cut(s)	636
BstX2I	RGATCY	1 cut(s)	682
BstYI	RGATCY	1 cut(s)	682
Bsu15I	ATCGAT	1 cut(s)	112
BsuRI	GGCC	2 cut(s)	350, 634
BsuTUI	ATCGAT	1 cut(s)	112
BtsCI	GGATG	3 cut(s)	10, 66, 655
BveI	ACCTGC	2 cut(s)	14, 148
Cac8I	GCNNGC	2 cut(s)	72, 294
CfoI	GCGC	1 cut(s)	130
Cfr10I	RCCGGY	1 cut(s)	292
Cfr13I	GGNCC	5 cut(s)	144, 348, 632, 633, 668
ClaI	ATCGAT	1 cut(s)	112
CseI	GACGC	2 cut(s)	419, 599
CviAII	CATG	4 cut(s)	131, 479, 602, 646
DdeI	CTNAG	1 cut(s)	585
DpnI	GATC	3 cut(s)	108, 684, 726
DpnII	GATC	3 cut(s)	106, 682, 724
EciI	GGCGGA	1 cut(s)	331
Eco130I	CCWWGG	1 cut(s)	308
Eco24I	GRGCYC	1 cut(s)	636
Eco47I	GGWCC	2 cut(s)	144, 668
Eco72I	CACGTG	1 cut(s)	502
EcoO109I	RGGNCCY	1 cut(s)	633
EcoRII	CCWGG	1 cut(s)	437
EcoT14I	CCWWGG	1 cut(s)	308
EcoT38I	GRGCYC	1 cut(s)	636
ErhI	CCWWGG	1 cut(s)	308
Esp3I	CGTCTC	1 cut(s)	158
FaeI	CATG	4 cut(s)	134, 482, 605, 649
FatI	CATG	4 cut(s)	130, 478, 601, 645
FauI	CCCGC	1 cut(s)	63
Fnu4HI	GCNGC	3 cut(s)	81, 84, 314
FokI	GGATG	3 cut(s)	17, 73, 662
FriOI	GRGCYC	1 cut(s)	636
Fsp4HI	GCNGC	3 cut(s)	81, 84, 314
FspBI	CTAG	2 cut(s)	75, 330
GlaI	GCGC	1 cut(s)	129
GluI	GCNGC	3 cut(s)	81, 84, 314
HaeIII	GGCC	2 cut(s)	350, 634
HapII	CCGG	1 cut(s)	293
HgaI	GACGC	2 cut(s)	419, 599
HhaI	GCGC	1 cut(s)	130
Hin1I	GRCGYC	1 cut(s)	430
Hin1II	CATG	4 cut(s)	134, 482, 605, 649
Hin6I	GCGC	1 cut(s)	128
HinP1I	GCGC	1 cut(s)	128
HincII	GTYRAC	1 cut(s)	476
HindII	GTYRAC	1 cut(s)	476
HinfI	GANTC	1 cut(s)	581
HpaII	CCGG	1 cut(s)	293
HphI	GGTGA	1 cut(s)	574
Hpy166II	GTNNAC	2 cut(s)	144, 476
Hpy188I	TCNGA	2 cut(s)	40, 339
Hpy188III	TCNNGA	2 cut(s)	163, 578
Hpy8I	GTNNAC	2 cut(s)	144, 476
HpyAV	CCTTC	5 cut(s)	226, 271, 279, 350, 529
HpyCH4III	ACNGT	2 cut(s)	218, 526
HpyCH4IV	ACGT	1 cut(s)	501
HpyCH4V	TGCA	3 cut(s)	23, 214, 499
HpyF10VI	GCNNNNNNNGC	3 cut(s)	80, 596, 640
HpyF3I	CTNAG	1 cut(s)	585
HpySE526I	ACGT	1 cut(s)	501
Hsp92I	GRCGYC	1 cut(s)	430
Hsp92II	CATG	4 cut(s)	134, 482, 605, 649
HspAI	GCGC	1 cut(s)	128
KroI	GCCGGC	1 cut(s)	292
KroNI	GCCGGC	1 cut(s)	294
Kzo9I	GATC	3 cut(s)	106, 682, 724
LmnI	GCTCC	2 cut(s)	169, 318
LweI	GCATC	1 cut(s)	723
MaeI	CTAG	2 cut(s)	75, 330
MaeII	ACGT	1 cut(s)	501
MaeIII	GTNAC	4 cut(s)	562, 578, 662, 673
MalI	GATC	3 cut(s)	108, 684, 726
MbiI	CCGCTC	2 cut(s)	70, 80
MboI	GATC	3 cut(s)	106, 682, 724
MboII	GAAGA	2 cut(s)	161, 544
MfeI	CAATTG	1 cut(s)	732
MflI	RGATCY	1 cut(s)	682
MhlI	GDGCHC	2 cut(s)	337, 636
MluCI	AATT	5 cut(s)	94, 223, 541, 615, 732
MlyI	GAGTC	1 cut(s)	575
MmeI	TCCRAC	2 cut(s)	223, 262
MnlI	CCTC	5 cut(s)	6, 239, 336, 380, 385
MroNI	GCCGGC	1 cut(s)	292
MseI	TTAA	1 cut(s)	362
MslI	CAYNNNNRTG	2 cut(s)	114, 483
MspI	CCGG	1 cut(s)	293
MspR9I	CCNGG	1 cut(s)	439
MunI	CAATTG	1 cut(s)	732
MvaI	CCWGG	1 cut(s)	439
MwoI	GCNNNNNNNGC	3 cut(s)	80, 596, 640
NaeI	GCCGGC	1 cut(s)	294
NdeII	GATC	3 cut(s)	106, 682, 724
NgoMIV	GCCGGC	1 cut(s)	292
NlaIII	CATG	4 cut(s)	134, 482, 605, 649
NlaIV	GGNNCC	3 cut(s)	171, 634, 670
NmuCI	GTSAC	3 cut(s)	562, 578, 662
NspI	RCATGY	1 cut(s)	482
PaqCI	CACCTGC	1 cut(s)	14
PciI	ACATGT	1 cut(s)	478
PdiI	GCCGGC	1 cut(s)	294
PkrI	GCNGC	3 cut(s)	82, 85, 315
Ple19I	CGATCG	1 cut(s)	727
PleI	GAGTC	1 cut(s)	575
PmaCI	CACGTG	1 cut(s)	502
PmlI	CACGTG	1 cut(s)	502
PpsI	GAGTC	1 cut(s)	575
Ppu21I	YACGTR	1 cut(s)	502
PscI	ACATGT	1 cut(s)	478
Psp6I	CCWGG	1 cut(s)	437
PspCI	CACGTG	1 cut(s)	502
PspGI	CCWGG	1 cut(s)	437
PspN4I	GGNNCC	3 cut(s)	171, 634, 670
PspOMI	GGGCCC	1 cut(s)	632
PspPI	GGNCC	5 cut(s)	144, 348, 632, 633, 668
PsuI	RGATCY	1 cut(s)	682
PvuI	CGATCG	1 cut(s)	727
RseI	CAYNNNNRTG	2 cut(s)	114, 483
SaqAI	TTAA	1 cut(s)	362
SatI	GCNGC	3 cut(s)	81, 84, 314
Sau3AI	GATC	3 cut(s)	106, 682, 724
Sau96I	GGNCC	5 cut(s)	144, 348, 632, 633, 668
SchI	GAGTC	1 cut(s)	575
ScrFI	CCNGG	1 cut(s)	439
SduI	GDGCHC	2 cut(s)	337, 636
SfaNI	GCATC	1 cut(s)	723
SinI	GGWCC	2 cut(s)	144, 668
SmiMI	CAYNNNNRTG	2 cut(s)	114, 483
Sse9I	AATT	5 cut(s)	94, 223, 541, 615, 732
SsiI	CCGC	5 cut(s)	70, 80, 83, 313, 316
SspMI	CTAG	2 cut(s)	75, 330
StyD4I	CCNGG	1 cut(s)	437
StyI	CCWWGG	1 cut(s)	308
TaaI	ACNGT	2 cut(s)	218, 526
TaiI	ACGT	1 cut(s)	504
TaqI	TCGA	3 cut(s)	112, 162, 304
TaqII	GACCGA	1 cut(s)	161
TasI	AATT	5 cut(s)	94, 223, 541, 615, 732
TauI	GCSGC	3 cut(s)	83, 86, 316
Tru1I	TTAA	1 cut(s)	362
Tru9I	TTAA	1 cut(s)	362
TseFI	GTSAC	3 cut(s)	562, 578, 662
Tsp45I	GTSAC	3 cut(s)	562, 578, 662
TspGWI	ACGGA	2 cut(s)	182, 681
VpaK11BI	GGWCC	2 cut(s)	144, 668
XapI	RAATTY	1 cut(s)	615
XceI	RCATGY	1 cut(s)	482
XspI	CTAG	2 cut(s)	75, 330

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.