Rw4G029380

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0001093
Physical Location & Seq
Forward (+)
56035741 .. 56036751
1011 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G029380.1

Sequence Viewer

Length: 1011 bp
ATGGAAATCCCAGTGGTGAATAGAATAAGCGATTTCGAGTTGCCCAGCCCGTCTTTCCCGTCGCAGGCTTTCTCCATTTCCGGAATCGAAAGGGTCTACAGCGTCTGGACATGGGGCGCTCTAATACTCGCCGTAATAGCTTCCTTCGGCACCATCATCACTAGAATCAACCTTGTTATCATCCGACGGCTCCGCCACAAGACCGCCGAGCCTCTCTGCCTCCGAGAAGAAGACGATTTCTCCGATATCGACGACGACGATGACGAAACATATTCCGTTTCCACGTCATCTTCGGTTTCCGACGAGGACGAGGAAGAAGAGGACGACAGAAGAGACGAAGATTTCAATGTCTCGGGAGCTGACCGGGGACAGAACCGTAATTCGAGGCTCCACCGTGGCCGAAGCTTCGCGGGCTTGAACTTAAACCGGTTCTCTTGGTCCGACTTCGCCAGCGGCAAGAGCGTCGTGAAGCTCTGGGACAACTTAGCTTTAGGATTGGACCTTGATGACGACAGCGACGACGAATATTCCGGCACCGGCAGAACCGTCTCCATCTACGACATGAACAAACAGAAGAAGATAAACTCCTTCTTCGCCGGCAGCTTCCAGGTCCCTGCGGCCGCCACGTCTTCGCGGTCCACGATTCTCACGGCTGACACGAACGCCTCCGGGCGCATAGCCTTGGGCGTGTGGGACACGCGCGTGGGCAGCAGGATACCGGCGATGCTCGCCGAGTGGGGCCCGCAGATCGGGAGAATCGTCGGAGTGTCCTCGGGCGGCGTCGACAAGGTTTACGTCAAGGATGACGTTACGGGGGCGCTAATGGTCGGTGACGTGAGGAAAGTGGGAGATCCGTTACGAAACGTAACGGATGCTGACGTGAGCGATACGTGGTGGGACGCCGATGCGGTTATGGTCTCGGACGAGTGTTTTGATGAGTCGGCCGCCGCGAGTGGTTGCGACTCGGCCGTGACTAGGTGTTGTAGCGCGGTTAGGTCTTATCTGTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

336

Amino Acids

36.78

Weight (kDa)

4.41

Isoelectric Point (pI)

36.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 149, 533
AccI GTMKAC 2 cut(s) 96, 783
AccII CGCG 6 cut(s) 410, 634, 700, 702, 950, 989
AccIII TCCGGA 1 cut(s) 80
AclWI GGATC 1 cut(s) 845
AcoI YGGCCR 4 cut(s) 397, 618, 942, 966
AcyI GRCGYC 2 cut(s) 780, 900
AfiI CCNNNNNNNGG 3 cut(s) 64, 749, 975
AgeI ACCGGT 1 cut(s) 426
AgsI TTSAA 2 cut(s) 346, 418
AjiI CACGTC 4 cut(s) 285, 627, 835, 880
AjnI CCWGG 1 cut(s) 606
AleI CACNNNNGTG 1 cut(s) 701
AluBI AGCT 6 cut(s) 140, 359, 405, 472, 488, 603
AluI AGCT 6 cut(s) 140, 359, 405, 472, 488, 603
Alw26I GTCTC 4 cut(s) 327, 355, 553, 922
AlwI GGATC 1 cut(s) 845
AlwNI CAGNNNCTG 1 cut(s) 105
Ama87I CYCGRG 2 cut(s) 352, 772
Aor13HI TCCGGA 1 cut(s) 80
AoxI GGCC 5 cut(s) 397, 618, 739, 942, 966
ApaI GGGCCC 1 cut(s) 743
ApeKI GCWGC 2 cut(s) 600, 708
ArsI GACNNNNNNTTYG 2 cut(s) 914, 946
AsiGI ACCGGT 1 cut(s) 426
AspLEI GCGC 5 cut(s) 119, 675, 702, 820, 989
AspS9I GGNCC 6 cut(s) 438, 499, 610, 636, 739, 740
AsuC2I CCSGG 2 cut(s) 365, 670
AsuHPI GGTGA 2 cut(s) 28, 842
AvaI CYCGRG 2 cut(s) 352, 772
AvaII GGWCC 4 cut(s) 438, 499, 610, 636
BaeGI GKGCMC 1 cut(s) 743
BanI GGYRCC 2 cut(s) 149, 533
BanII GRGCYC 1 cut(s) 743
BbsI GAAGAC 2 cut(s) 237, 621
BbvI GCAGC 2 cut(s) 612, 720
BccI CCATC 2 cut(s) 161, 560
BceAI ACGGC 4 cut(s) 116, 203, 666, 953
BcgI CGANNNNNNTGC 2 cut(s) 445, 479
BciT130I CCWGG 1 cut(s) 608
BciVI GTATCC 1 cut(s) 708
BcnI CCSGG 2 cut(s) 365, 670
BcoDI GTCTC 4 cut(s) 327, 355, 553, 922
BfaI CTAG 2 cut(s) 162, 975
BfmI CTRYAG 1 cut(s) 97
BfoI RGCGCY 2 cut(s) 120, 821
BfuI GTATCC 1 cut(s) 708
BisI GCNGC 8 cut(s) 454, 601, 618, 621, 709, 778, 945, 948
BlsI GCNGC 8 cut(s) 455, 602, 619, 622, 710, 779, 946, 949
Bme1390I CCNGG 3 cut(s) 365, 608, 670
Bme18I GGWCC 4 cut(s) 438, 499, 610, 636
BmeT110I CYCGRG 2 cut(s) 352, 772
BmgBI CACGTC 4 cut(s) 285, 627, 835, 880
BmgT120I GGNCC 6 cut(s) 438, 499, 610, 636, 739, 740
BmiI GGNNCC 7 cut(s) 151, 191, 389, 535, 612, 740, 741
BmrFI CCNGG 3 cut(s) 365, 608, 670
BmrI ACTGGG 1 cut(s) 5
BmsI GCATC 3 cut(s) 714, 862, 895
BmuI ACTGGG 1 cut(s) 5
BpiI GAAGAC 2 cut(s) 237, 621
BpuMI CCSGG 2 cut(s) 365, 670
BsaAI YACGTR 1 cut(s) 891
BsaHI GRCGYC 2 cut(s) 780, 900
BsaI GGTCTC 1 cut(s) 922
BsaJI CCNNGG 4 cut(s) 364, 394, 681, 771
BsaWI WCCGGW 2 cut(s) 80, 426
BsaXI ACNNNNNCTCC 2 cut(s) 224, 254
Bsc4I CCNNNNNNNGG 3 cut(s) 64, 749, 975
Bse118I RCCGGY 4 cut(s) 426, 536, 596, 718
Bse1I ACTGG 1 cut(s) 11
BseAI TCCGGA 1 cut(s) 80
BseBI CCWGG 1 cut(s) 608
BseDI CCNNGG 4 cut(s) 364, 394, 681, 771
BseGI GGATG 3 cut(s) 180, 808, 877
BseLI CCNNNNNNNGG 3 cut(s) 64, 749, 975
BseNI ACTGG 1 cut(s) 11
BseSI GKGCMC 1 cut(s) 743
BseX3I CGGCCG 3 cut(s) 618, 942, 966
BseXI GCAGC 2 cut(s) 612, 720
BseYI CCCAGC 1 cut(s) 44
Bsh1236I CGCG 6 cut(s) 410, 634, 700, 702, 950, 989
Bsh1285I CGRYCG 3 cut(s) 621, 945, 969
BshFI GGCC 5 cut(s) 399, 620, 741, 944, 968
BshNI GGYRCC 2 cut(s) 149, 533
BshTI ACCGGT 1 cut(s) 426
BsiEI CGRYCG 3 cut(s) 621, 945, 969
BsiHKCI CYCGRG 2 cut(s) 352, 772
BsiSI CCGG 8 cut(s) 81, 364, 427, 531, 537, 597, 669, 719
BslFI GGGAC 5 cut(s) 381, 491, 596, 707, 911
BslI CCNNNNNNNGG 3 cut(s) 64, 749, 975
BsmAI GTCTC 4 cut(s) 327, 355, 553, 922
BsmBI CGTCTC 2 cut(s) 327, 553
BsmFI GGGAC 5 cut(s) 381, 491, 596, 707, 911
BsnI GGCC 5 cut(s) 399, 620, 741, 944, 968
Bso31I GGTCTC 1 cut(s) 922
BsoBI CYCGRG 2 cut(s) 352, 772
Bsp120I GGGCCC 1 cut(s) 739
Bsp1286I GDGCHC 1 cut(s) 743
Bsp13I TCCGGA 1 cut(s) 80
Bsp143I GATC 2 cut(s) 747, 850
BspANI GGCC 5 cut(s) 399, 620, 741, 944, 968
BspEI TCCGGA 1 cut(s) 80
BspFNI CGCG 6 cut(s) 410, 634, 700, 702, 950, 989
BspLI GGNNCC 7 cut(s) 151, 191, 389, 535, 612, 740, 741
BspPI GGATC 1 cut(s) 845
BspT107I GGYRCC 2 cut(s) 149, 533
BspTNI GGTCTC 1 cut(s) 922
BsrFI RCCGGY 4 cut(s) 426, 536, 596, 718
BsrI ACTGG 1 cut(s) 11
BssAI RCCGGY 4 cut(s) 426, 536, 596, 718
BssECI CCNNGG 4 cut(s) 364, 394, 681, 771
BssMI GATC 2 cut(s) 747, 850
BssNI GRCGYC 2 cut(s) 780, 900
BssT1I CCWWGG 1 cut(s) 681
Bst2UI CCWGG 1 cut(s) 608
Bst4CI ACNGT 3 cut(s) 377, 395, 547
Bst6I CTCTTC 2 cut(s) 312, 325
BstACI GRCGYC 2 cut(s) 780, 900
BstBAI YACGTR 1 cut(s) 891
BstC8I GCNNGC 6 cut(s) 66, 412, 451, 598, 729, 743
BstDEI CTNAG 1 cut(s) 484
BstDSI CCRYGG 1 cut(s) 394
BstF5I GGATG 3 cut(s) 180, 808, 877
BstFNI CGCG 6 cut(s) 410, 634, 700, 702, 950, 989
BstH2I RGCGCY 2 cut(s) 120, 821
BstHHI GCGC 5 cut(s) 119, 675, 702, 820, 989
BstKTI GATC 2 cut(s) 750, 853
BstMAI GTCTC 4 cut(s) 327, 355, 553, 922
BstMBI GATC 2 cut(s) 747, 850
BstMCI CGRYCG 3 cut(s) 621, 945, 969
BstMWI GCNNNNNNNGC 5 cut(s) 137, 411, 459, 708, 728
BstNI CCWGG 1 cut(s) 608
BstSCI CCNGG 3 cut(s) 363, 606, 668
BstSFI CTRYAG 1 cut(s) 97
BstSLI GKGCMC 1 cut(s) 743
BstUI CGCG 6 cut(s) 410, 634, 700, 702, 950, 989
BstV1I GCAGC 2 cut(s) 612, 720
BstV2I GAAGAC 2 cut(s) 237, 621
BstX2I RGATCY 1 cut(s) 850
BstYI RGATCY 1 cut(s) 850
BstZI CGGCCG 3 cut(s) 618, 942, 966
BsuI GTATCC 1 cut(s) 708
BsuRI GGCC 5 cut(s) 399, 620, 741, 944, 968
BtgI CCRYGG 1 cut(s) 394
BtgZI GCGATG 1 cut(s) 737
BtrI CACGTC 4 cut(s) 285, 627, 835, 880
BtsCI GGATG 3 cut(s) 180, 808, 877
BtsIMutI CAGTG 1 cut(s) 18
Cac8I GCNNGC 6 cut(s) 66, 412, 451, 598, 729, 743
CaiI CAGNNNCTG 1 cut(s) 105
CciNI GCGGCCGC 1 cut(s) 618
CfoI GCGC 5 cut(s) 119, 675, 702, 820, 989
Cfr10I RCCGGY 4 cut(s) 426, 536, 596, 718
Cfr13I GGNCC 6 cut(s) 438, 499, 610, 636, 739, 740
CseI GACGC 4 cut(s) 91, 451, 769, 908
CspAI ACCGGT 1 cut(s) 426
CviAII CATG 2 cut(s) 111, 562
DdeI CTNAG 1 cut(s) 484
DpnI GATC 2 cut(s) 749, 852
DpnII GATC 2 cut(s) 747, 850
EaeI YGGCCR 4 cut(s) 397, 618, 942, 966
EagI CGGCCG 3 cut(s) 618, 942, 966
Eam1104I CTCTTC 2 cut(s) 312, 325
EarI CTCTTC 2 cut(s) 312, 325
EciI GGCGGA 1 cut(s) 182
EclXI CGGCCG 3 cut(s) 618, 942, 966
Eco130I CCWWGG 1 cut(s) 681
Eco24I GRGCYC 1 cut(s) 743
Eco31I GGTCTC 1 cut(s) 922
Eco32I GATATC 1 cut(s) 247
Eco47I GGWCC 4 cut(s) 438, 499, 610, 636
Eco52I CGGCCG 3 cut(s) 618, 942, 966
Eco88I CYCGRG 2 cut(s) 352, 772
EcoO109I RGGNCCY 2 cut(s) 610, 739
EcoRII CCWGG 1 cut(s) 606
EcoRV GATATC 1 cut(s) 247
EcoT14I CCWWGG 1 cut(s) 681
EcoT38I GRGCYC 1 cut(s) 743
ErhI CCWWGG 1 cut(s) 681
Esp3I CGTCTC 2 cut(s) 327, 553
FaeI CATG 2 cut(s) 114, 565
FaiI YATR 6 cut(s) 112, 271, 563, 677, 914, 1009
FaqI GGGAC 5 cut(s) 381, 491, 596, 707, 911
FatI CATG 2 cut(s) 110, 561
FauI CCCGC 2 cut(s) 403, 750
FblI GTMKAC 2 cut(s) 96, 783
Fnu4HI GCNGC 8 cut(s) 454, 601, 618, 621, 709, 778, 945, 948
FokI GGATG 3 cut(s) 167, 815, 884
FriOI GRGCYC 1 cut(s) 743
Fsp4HI GCNGC 8 cut(s) 454, 601, 618, 621, 709, 778, 945, 948
FspBI CTAG 2 cut(s) 162, 975
GlaI GCGC 5 cut(s) 118, 674, 701, 819, 988
GluI GCNGC 8 cut(s) 454, 601, 618, 621, 709, 778, 945, 948
GsaI CCCAGC 1 cut(s) 48
HaeII RGCGCY 2 cut(s) 120, 821
HaeIII GGCC 5 cut(s) 399, 620, 741, 944, 968
HapII CCGG 8 cut(s) 81, 364, 427, 531, 537, 597, 669, 719
HgaI GACGC 4 cut(s) 91, 451, 769, 908
HhaI GCGC 5 cut(s) 119, 675, 702, 820, 989
Hin1I GRCGYC 2 cut(s) 780, 900
Hin1II CATG 2 cut(s) 114, 565
Hin6I GCGC 5 cut(s) 117, 673, 700, 818, 987
HinP1I GCGC 5 cut(s) 117, 673, 700, 818, 987
HincII GTYRAC 1 cut(s) 784
HindII GTYRAC 1 cut(s) 784
HindIII AAGCTT 1 cut(s) 403
HinfI GANTC 6 cut(s) 84, 165, 643, 756, 938, 962
HpaII CCGG 8 cut(s) 81, 364, 427, 531, 537, 597, 669, 719
HphI GGTGA 2 cut(s) 28, 842
Hpy166II GTNNAC 4 cut(s) 97, 639, 784, 793
Hpy188I TCNGA 7 cut(s) 185, 224, 244, 301, 442, 764, 922
Hpy188III TCNNGA 5 cut(s) 81, 106, 354, 466, 751
Hpy8I GTNNAC 4 cut(s) 97, 639, 784, 793
HpyAV CCTTC 2 cut(s) 154, 598
HpyCH4III ACNGT 3 cut(s) 377, 395, 547
HpyCH4IV ACGT 8 cut(s) 284, 626, 795, 807, 834, 864, 879, 890
HpyF10VI GCNNNNNNNGC 5 cut(s) 137, 411, 459, 708, 728
HpyF3I CTNAG 1 cut(s) 484
HpySE526I ACGT 8 cut(s) 284, 626, 795, 807, 834, 864, 879, 890
Hsp92I GRCGYC 2 cut(s) 780, 900
Hsp92II CATG 2 cut(s) 114, 565
HspAI GCGC 5 cut(s) 117, 673, 700, 818, 987
Kpn2I TCCGGA 1 cut(s) 80
KroI GCCGGC 1 cut(s) 596
KroNI GCCGGC 1 cut(s) 598
Kzo9I GATC 2 cut(s) 747, 850
LmnI GCTCC 3 cut(s) 195, 356, 393
Lsp1109I GCAGC 2 cut(s) 612, 720
LweI GCATC 3 cut(s) 714, 862, 895
MaeI CTAG 2 cut(s) 162, 975
MaeII ACGT 8 cut(s) 284, 626, 795, 807, 834, 864, 879, 890
MaeIII GTNAC 5 cut(s) 808, 830, 855, 865, 970
MalI GATC 2 cut(s) 749, 852
MboI GATC 2 cut(s) 747, 850
MflI RGATCY 1 cut(s) 850
MhlI GDGCHC 1 cut(s) 743
MluCI AATT 1 cut(s) 379
MlyI GAGTC 2 cut(s) 947, 956
MmeI TCCRAC 4 cut(s) 208, 324, 465, 742
MnlI CCTC 9 cut(s) 222, 230, 298, 304, 313, 378, 676, 781, 831
MroI TCCGGA 1 cut(s) 80
MroNI GCCGGC 1 cut(s) 596
MseI TTAA 1 cut(s) 422
MslI CAYNNNNRTG 1 cut(s) 701
MspA1I CMGCKG 1 cut(s) 453
MspI CCGG 8 cut(s) 81, 364, 427, 531, 537, 597, 669, 719
MspR9I CCNGG 3 cut(s) 365, 608, 670
MvaI CCWGG 1 cut(s) 608
MvnI CGCG 6 cut(s) 410, 634, 700, 702, 950, 989
MwoI GCNNNNNNNGC 5 cut(s) 137, 411, 459, 708, 728
NaeI GCCGGC 1 cut(s) 598
NciI CCSGG 2 cut(s) 365, 670
NdeII GATC 2 cut(s) 747, 850
NgoMIV GCCGGC 1 cut(s) 596
NlaIII CATG 2 cut(s) 114, 565
NlaIV GGNNCC 7 cut(s) 151, 191, 389, 535, 612, 740, 741
NmeAIII GCCGAG 3 cut(s) 232, 757, 944
NmuCI GTSAC 2 cut(s) 830, 970
NotI GCGGCCGC 1 cut(s) 618
OliI CACNNNNGTG 1 cut(s) 701
PcsI WCGNNNNNNNCGW 8 cut(s) 240, 255, 261, 516, 638, 656, 756, 947
PdiI GCCGGC 1 cut(s) 598
PfeI GAWTC 4 cut(s) 84, 165, 643, 756
PinAI ACCGGT 1 cut(s) 426
PkrI GCNGC 8 cut(s) 455, 602, 619, 622, 710, 779, 946, 949
PleI GAGTC 2 cut(s) 946, 956
PpsI GAGTC 2 cut(s) 946, 956
Ppu21I YACGTR 1 cut(s) 891
PpuMI RGGWCCY 1 cut(s) 610
Psp5II RGGWCCY 1 cut(s) 610
Psp6I CCWGG 1 cut(s) 606
PspFI CCCAGC 1 cut(s) 44
PspGI CCWGG 1 cut(s) 606
PspN4I GGNNCC 7 cut(s) 151, 191, 389, 535, 612, 740, 741
PspOMI GGGCCC 1 cut(s) 739
PspPI GGNCC 6 cut(s) 438, 499, 610, 636, 739, 740
PspPPI RGGWCCY 1 cut(s) 610
PstNI CAGNNNCTG 1 cut(s) 105
PsuI RGATCY 1 cut(s) 850
RseI CAYNNNNRTG 1 cut(s) 701
SalI GTCGAC 1 cut(s) 782
SaqAI TTAA 1 cut(s) 422
SatI GCNGC 8 cut(s) 454, 601, 618, 621, 709, 778, 945, 948
Sau3AI GATC 2 cut(s) 747, 850
Sau96I GGNCC 6 cut(s) 438, 499, 610, 636, 739, 740
SchI GAGTC 2 cut(s) 947, 956
ScrFI CCNGG 3 cut(s) 365, 608, 670
SduI GDGCHC 1 cut(s) 743
SfaNI GCATC 3 cut(s) 714, 862, 895
SfcI CTRYAG 1 cut(s) 97
SinI GGWCC 4 cut(s) 438, 499, 610, 636
SmiMI CAYNNNNRTG 1 cut(s) 701
Sse9I AATT 1 cut(s) 379
SspI AATATT 1 cut(s) 527
SspMI CTAG 2 cut(s) 162, 975
StyD4I CCNGG 3 cut(s) 363, 606, 668
StyI CCWWGG 1 cut(s) 681
TaaI ACNGT 3 cut(s) 377, 395, 547
TaiI ACGT 8 cut(s) 287, 629, 798, 810, 837, 867, 882, 893
TaqI TCGA 5 cut(s) 36, 87, 249, 383, 783
TasI AATT 1 cut(s) 379
TauI GCSGC 6 cut(s) 456, 620, 623, 780, 947, 950
TfiI GAWTC 4 cut(s) 84, 165, 643, 756
Tru1I TTAA 1 cut(s) 422
Tru9I TTAA 1 cut(s) 422
TscAI CASTG 1 cut(s) 18
TseFI GTSAC 2 cut(s) 830, 970
TseI GCWGC 2 cut(s) 600, 708
Tsp45I GTSAC 2 cut(s) 830, 970
TspDTI ATGAA 1 cut(s) 578
TspGWI ACGGA 3 cut(s) 265, 843, 884
TspRI CASTG 1 cut(s) 18
VpaK11BI GGWCC 4 cut(s) 438, 499, 610, 636
XmiI GTMKAC 2 cut(s) 96, 783
XspI CTAG 2 cut(s) 162, 975
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.