Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0001093

Physical Location & Seq

Genomic Coordinates Forward (+)

55814288 .. 55816071

Gene Structure 1784 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0390300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

ATGAGTCAAGATTATGATTCTATCGTTGAAATAGAGCATGCAACCGCAGTGGCAGCTGCCGCATTTGCAGTTAAATCAATCGAAGAATCGGCAGTCTCTGATAAGAAAAGGACAGGCGATGAAACTAGTGACTCTTTGGTGAAGATCAAGAGCAAAAAGGAAGAAACAACAATTTCAAAGCCAGAACCTGGAAGACTTTCCAAACTATTCTCAGGTTTAACAAAAAGTACTCAAGAAGATCCAGATAGTAAGGTGCCAATAAGTACTTCTCCTACTTTTCCAAACGACAAGATCCCGGGAAAGACCATCCTTCCTGCTCCCTCTATCAAACGAACTCCAACGTCTGATGCCATCCATCCTGCCCCATCAATGAAAAAAACTCCAACTTTTGCTGATAAGCCATTGAACAGCACAAGCAGTATAAAACCCGAAACTTCAGCACCAAAACTCAATTTGCCCACCACTATGAAACCTGCTGCACCTGCAAATGAAACCAAAGGGCAGAGTGCAGCAAGACCTGGAGTGGTAAAGACAAAAGCAGATAAATGGGAGGAGGCTGAGATGGCTAAACTCAAAGAAAGGTATGAGCGGCAAAATGCTACAATACTTTCCTGGGAGAACAAGAAGAAGAAGAAAAGCAAACTTCGGCTGGAGAAAAGAGAGAGTGAAACAGAGAGAAGAAGAGTAAAAGCGCTACAAAAGTACAACAATGAGATGGAATTTATCAAACAGATTGCAGAAGGAGCAAGGGCACAGGCAGAGGAGAAGCGTAGGAATAAAGAACTCAAGGTGAAAGAAAAGGCAAATACACTAAGAAGAACAGGGGAAGAAGCTCCTACAACATGTTGCTGCTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0001101 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0006950 GO:0006979 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0009636 GO:0009719 GO:0009725 GO:0009753 GO:0009987 GO:0010033 GO:0010035 GO:0010150 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0032501 GO:0032502 GO:0036211 GO:0042221 GO:0042493 GO:0042542 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046677 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0090693 GO:0099402 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04011 ko04120 ko04144 ko04530 ko05169 map04011 map04120 map04144 map04530 map05169

Pfam Domains

Protein Families

HECT ubiquitin

Protein Analysis

285

Amino Acids

31.66

Weight (kDa)

9.6

Isoelectric Point (pI)

56.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Remorin_C	PF03763	176 - 276	1e-27	Remorin, C-terminal region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001093)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G25400 AT1G25400 AT1G68440
fragaria_vesca	FvH4_4g27210 FvH4_5g09320 FvH4_5g18320 FvH4_5g36190 FvH4_5g36660 FvH4_6g02080 FvH4_6g18410 FvH4_6g37922 FvH4_6g48101
malus_domestica	MD13G1040500.v1.1 MD16G1041500.v1.1
prunus_persica	Prupe.1G312600_v2.0.a1
pyrus_communis	pycom13g03470 pycom16g03590
rosa_chinensis	RchiOBHm_Chr2g0089781 RchiOBHm_Chr2g0161601 RchiOBHm_Chr4g0435001 RchiOBHm_Chr5g0057351 RchiOBHm_Chr6g0279821 RchiOBHm_Chr7g0227101
rosa_laevigata	RLG00000006630 RLG00000007926
rosa_multiflora	Rmu_co7981798.1_g000001 Rmu_co8240437.1_g000001 Rmu_sc0000400.1_g000034 Rmu_sc0000869.1_g000026 Rmu_sc0001246.1_g000017 Rmu_sc0002430.1_g000001 Rmu_sc0004574.1_g000051 Rmu_sc0009868.1_g000002 Rmu_sc0010765.1_g000001
rosa_roxburghii	Rroxscaffold_1G00019050 Rroxscaffold_2G00088100 Rroxscaffold_5G00376170
rosa_rugosa	Rorug02G0108200 Rorug02G0398300 Rorug02G0435100 Rorug03G0104500 Rorug03G0112000 Rorug03G0209100 Rorug04G0021800 Rorug04G0169800 Rorug04G0281500 Rorug04G0390300 Rorug05G0263200 Rorug05G0281200 Rorug06G0472700 Rorug07G0039700 Rorug07G0207300
rosa_samantha	Rh4AG337000 Rh4BG161500 Rh4BG344900 Rh4CG359600 Rh4DG339400 Rh5DG431200
rosa_wichuraiana	Rw4G029380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	490
Acc36I	ACCTGC	2 cut(s)	481, 490
AccB1I	GGYRCC	1 cut(s)	253
AccB7I	CCANNNNNTGG	1 cut(s)	188
AccBSI	CCGCTC	1 cut(s)	589
AciI	CCGC	3 cut(s)	45, 60, 589
AclWI	GGATC	2 cut(s)	233, 286
AcsI	RAATTY	1 cut(s)	719
AcuI	CTGAAG	1 cut(s)	420
AfaI	GTAC	3 cut(s)	229, 265, 704
AfeI	AGCGCT	1 cut(s)	693
AfiI	CCNNNNNNNGG	1 cut(s)	188
AflIII	ACRYGT	1 cut(s)	842
AgsI	TTSAA	3 cut(s)	29, 177, 406
AhlI	ACTAGT	1 cut(s)	125
AjnI	CCWGG	3 cut(s)	187, 517, 611
AjuI	GAANNNNNNNTTGG	2 cut(s)	250, 282
AluBI	AGCT	2 cut(s)	56, 833
AluI	AGCT	2 cut(s)	56, 833
Alw26I	GTCTC	1 cut(s)	100
AlwI	GGATC	2 cut(s)	233, 286
AlwNI	CAGNNNCTG	2 cut(s)	98, 188
Ama87I	CYCGRG	1 cut(s)	295
Aor51HI	AGCGCT	1 cut(s)	693
ApeKI	GCWGC	5 cut(s)	53, 56, 476, 509, 849
ApoI	RAATTY	1 cut(s)	719
Asp700I	GAANNNNTTC	1 cut(s)	196
AspLEI	GCGC	1 cut(s)	694
AsuC2I	CCSGG	2 cut(s)	296, 297
AsuHPI	GGTGA	2 cut(s)	151, 802
AvaI	CYCGRG	1 cut(s)	295
BaeGI	GKGCMC	1 cut(s)	754
BanI	GGYRCC	1 cut(s)	253
BbsI	GAAGAC	1 cut(s)	199
BbvI	GCAGC	5 cut(s)	43, 65, 463, 521, 836
BccI	CCATC	6 cut(s)	314, 359, 363, 373, 556, 709
BciT130I	CCWGG	3 cut(s)	189, 519, 613
BcnI	CCSGG	2 cut(s)	296, 297
BcoDI	GTCTC	1 cut(s)	100
BcuI	ACTAGT	1 cut(s)	125
BfaI	CTAG	1 cut(s)	126
BfoI	RGCGCY	1 cut(s)	695
BfuAI	ACCTGC	2 cut(s)	481, 490
BisI	GCNGC	7 cut(s)	54, 57, 60, 477, 510, 590, 850
BlsI	GCNGC	7 cut(s)	55, 58, 61, 478, 511, 591, 851
BmcAI	AGTACT	2 cut(s)	229, 265
Bme1390I	CCNGG	5 cut(s)	189, 296, 297, 519, 613
BmeT110I	CYCGRG	1 cut(s)	295
BmiI	GGNNCC	1 cut(s)	255
BmrFI	CCNGG	5 cut(s)	189, 296, 297, 519, 613
BmsI	GCATC	1 cut(s)	337
BpiI	GAAGAC	1 cut(s)	199
BpmI	CTGGAG	2 cut(s)	540, 671
BpuEI	CTTGAG	2 cut(s)	216, 770
BpuMI	CCSGG	2 cut(s)	296, 297
BsaJI	CCNNGG	2 cut(s)	295, 612
Bsc4I	CCNNNNNNNGG	1 cut(s)	188
BseBI	CCWGG	3 cut(s)	189, 519, 613
BseDI	CCNNGG	2 cut(s)	295, 612
BseGI	GGATG	3 cut(s)	306, 351, 355
BseLI	CCNNNNNNNGG	1 cut(s)	188
BseMII	CTCAG	2 cut(s)	225, 549
BseRI	GAGGAG	2 cut(s)	566, 776
BseSI	GKGCMC	1 cut(s)	754
BseXI	GCAGC	5 cut(s)	43, 65, 463, 521, 836
BsgI	GTGCAG	2 cut(s)	462, 528
BshNI	GGYRCC	1 cut(s)	253
BsiHKCI	CYCGRG	1 cut(s)	295
BsiSI	CCGG	1 cut(s)	296
BslI	CCNNNNNNNGG	1 cut(s)	188
BsmAI	GTCTC	1 cut(s)	100
BsoBI	CYCGRG	1 cut(s)	295
Bsp1286I	GDGCHC	1 cut(s)	754
Bsp143I	GATC	3 cut(s)	144, 238, 291
BspACI	CCGC	3 cut(s)	45, 60, 589
BspCNI	CTCAG	2 cut(s)	224, 550
BspLI	GGNNCC	1 cut(s)	255
BspMI	ACCTGC	2 cut(s)	481, 490
BspPI	GGATC	2 cut(s)	233, 286
BspT107I	GGYRCC	1 cut(s)	253
BsrBI	CCGCTC	1 cut(s)	589
BssECI	CCNNGG	2 cut(s)	295, 612
BssMI	GATC	3 cut(s)	144, 238, 291
Bst2UI	CCWGG	3 cut(s)	189, 519, 613
Bst6I	CTCTTC	1 cut(s)	676
BstC8I	GCNNGC	1 cut(s)	39
BstDEI	CTNAG	3 cut(s)	211, 558, 812
BstF5I	GGATG	3 cut(s)	306, 351, 355
BstH2I	RGCGCY	1 cut(s)	695
BstHHI	GCGC	1 cut(s)	694
BstKTI	GATC	3 cut(s)	147, 241, 294
BstMAI	GTCTC	1 cut(s)	100
BstMBI	GATC	3 cut(s)	144, 238, 291
BstMWI	GCNNNNNNNGC	6 cut(s)	53, 59, 65, 482, 563, 743
BstNI	CCWGG	3 cut(s)	189, 519, 613
BstNSI	RCATGY	2 cut(s)	41, 846
BstSCI	CCNGG	5 cut(s)	187, 294, 295, 517, 611
BstSLI	GKGCMC	1 cut(s)	754
BstV1I	GCAGC	5 cut(s)	43, 65, 463, 521, 836
BstV2I	GAAGAC	1 cut(s)	199
BstX2I	RGATCY	2 cut(s)	238, 291
BstYI	RGATCY	2 cut(s)	238, 291
BtgZI	GCGATG	1 cut(s)	132
BtsCI	GGATG	3 cut(s)	306, 351, 355
BtsI	GCAGTG	1 cut(s)	54
BtsIMutI	CAGTG	1 cut(s)	54
BveI	ACCTGC	2 cut(s)	481, 490
Cac8I	GCNNGC	1 cut(s)	39
CaiI	CAGNNNCTG	2 cut(s)	98, 188
CfoI	GCGC	1 cut(s)	694
Cfr9I	CCCGGG	1 cut(s)	295
Csp6I	GTAC	3 cut(s)	228, 264, 703
CspCI	CAANNNNNGTGG	2 cut(s)	30, 65
CviAII	CATG	2 cut(s)	38, 843
CviJI	RGCY	7 cut(s)	56, 181, 400, 557, 566, 649, 833
CviKI_1	RGCY	7 cut(s)	56, 181, 400, 557, 566, 649, 833
CviQI	GTAC	3 cut(s)	228, 264, 703
DdeI	CTNAG	3 cut(s)	211, 558, 812
DpnI	GATC	3 cut(s)	146, 240, 293
DpnII	GATC	3 cut(s)	144, 238, 291
Eam1104I	CTCTTC	1 cut(s)	676
EarI	CTCTTC	1 cut(s)	676
Eco47III	AGCGCT	1 cut(s)	693
Eco57I	CTGAAG	1 cut(s)	420
Eco88I	CYCGRG	1 cut(s)	295
EcoRII	CCWGG	3 cut(s)	187, 517, 611
FaeI	CATG	2 cut(s)	41, 846
FaiI	YATR	6 cut(s)	15, 39, 422, 467, 585, 844
FatI	CATG	2 cut(s)	37, 842
Fnu4HI	GCNGC	7 cut(s)	54, 57, 60, 477, 510, 590, 850
FokI	GGATG	3 cut(s)	293, 338, 342
Fsp4HI	GCNGC	7 cut(s)	54, 57, 60, 477, 510, 590, 850
FspBI	CTAG	1 cut(s)	126
GlaI	GCGC	1 cut(s)	693
GluI	GCNGC	7 cut(s)	54, 57, 60, 477, 510, 590, 850
GsuI	CTGGAG	2 cut(s)	540, 671
HaeII	RGCGCY	1 cut(s)	695
HapII	CCGG	1 cut(s)	296
HhaI	GCGC	1 cut(s)	694
Hin1II	CATG	2 cut(s)	41, 846
Hin6I	GCGC	1 cut(s)	692
HinP1I	GCGC	1 cut(s)	692
HinfI	GANTC	4 cut(s)	4, 17, 86, 131
HpaII	CCGG	1 cut(s)	296
HphI	GGTGA	2 cut(s)	151, 802
Hpy188I	TCNGA	2 cut(s)	100, 346
Hpy188III	TCNNGA	4 cut(s)	8, 148, 233, 242
HpyAV	CCTTC	2 cut(s)	320, 734
HpyCH4IV	ACGT	1 cut(s)	341
HpyCH4V	TGCA	6 cut(s)	41, 68, 479, 485, 509, 737
HpyF10VI	GCNNNNNNNGC	6 cut(s)	53, 59, 65, 482, 563, 743
HpyF3I	CTNAG	3 cut(s)	211, 558, 812
HpySE526I	ACGT	1 cut(s)	341
Hsp92II	CATG	2 cut(s)	41, 846
HspAI	GCGC	1 cut(s)	692
Kzo9I	GATC	3 cut(s)	144, 238, 291
LmnI	GCTCC	3 cut(s)	322, 743, 838
Lsp1109I	GCAGC	5 cut(s)	43, 65, 463, 521, 836
LweI	GCATC	1 cut(s)	337
MaeI	CTAG	1 cut(s)	126
MaeII	ACGT	1 cut(s)	341
MaeIII	GTNAC	1 cut(s)	128
MalI	GATC	3 cut(s)	146, 240, 293
MbiI	CCGCTC	1 cut(s)	589
MboI	GATC	3 cut(s)	144, 238, 291
MflI	RGATCY	2 cut(s)	238, 291
MhlI	GDGCHC	1 cut(s)	754
MluCI	AATT	3 cut(s)	171, 451, 719
MlyI	GAGTC	2 cut(s)	13, 125
MmeI	TCCRAC	2 cut(s)	362, 407
MnlI	CCTC	4 cut(s)	331, 544, 547, 754
MroXI	GAANNNNTTC	1 cut(s)	196
MseI	TTAA	2 cut(s)	72, 218
MslI	CAYNNNNRTG	1 cut(s)	464
MspA1I	CMGCKG	1 cut(s)	56
MspI	CCGG	1 cut(s)	296
MspR9I	CCNGG	5 cut(s)	189, 296, 297, 519, 613
MvaI	CCWGG	3 cut(s)	189, 519, 613
MwoI	GCNNNNNNNGC	6 cut(s)	53, 59, 65, 482, 563, 743
NciI	CCSGG	2 cut(s)	296, 297
NdeII	GATC	3 cut(s)	144, 238, 291
NlaIII	CATG	2 cut(s)	41, 846
NlaIV	GGNNCC	1 cut(s)	255
NmuCI	GTSAC	1 cut(s)	128
NspI	RCATGY	2 cut(s)	41, 846
PaeI	GCATGC	1 cut(s)	41
PaqCI	CACCTGC	1 cut(s)	490
PciI	ACATGT	1 cut(s)	842
PdmI	GAANNNNTTC	1 cut(s)	196
PfeI	GAWTC	2 cut(s)	17, 86
PflMI	CCANNNNNTGG	1 cut(s)	188
PkrI	GCNGC	7 cut(s)	55, 58, 61, 478, 511, 591, 851
PleI	GAGTC	2 cut(s)	12, 125
PpsI	GAGTC	2 cut(s)	12, 125
PscI	ACATGT	1 cut(s)	842
Psp6I	CCWGG	3 cut(s)	187, 517, 611
PspGI	CCWGG	3 cut(s)	187, 517, 611
PspN4I	GGNNCC	1 cut(s)	255
PstNI	CAGNNNCTG	2 cut(s)	98, 188
PsuI	RGATCY	2 cut(s)	238, 291
PvuII	CAGCTG	1 cut(s)	56
RsaI	GTAC	3 cut(s)	229, 265, 704
RsaNI	GTAC	3 cut(s)	228, 264, 703
RseI	CAYNNNNRTG	1 cut(s)	464
SaqAI	TTAA	2 cut(s)	72, 218
SatI	GCNGC	7 cut(s)	54, 57, 60, 477, 510, 590, 850
Sau3AI	GATC	3 cut(s)	144, 238, 291
ScaI	AGTACT	2 cut(s)	229, 265
SchI	GAGTC	2 cut(s)	13, 125
ScrFI	CCNGG	5 cut(s)	189, 296, 297, 519, 613
SduI	GDGCHC	1 cut(s)	754
SfaNI	GCATC	1 cut(s)	337
SmaI	CCCGGG	1 cut(s)	297
SmiMI	CAYNNNNRTG	1 cut(s)	464
SmlI	CTYRAG	2 cut(s)	231, 785
SmoI	CTYRAG	2 cut(s)	231, 785
SpeI	ACTAGT	1 cut(s)	125
SphI	GCATGC	1 cut(s)	41
Sse9I	AATT	3 cut(s)	171, 451, 719
SsiI	CCGC	3 cut(s)	45, 60, 589
SspMI	CTAG	1 cut(s)	126
StyD4I	CCNGG	5 cut(s)	187, 294, 295, 517, 611
TaiI	ACGT	1 cut(s)	344
TaqI	TCGA	1 cut(s)	81
TasI	AATT	3 cut(s)	171, 451, 719
TatI	WGTACW	3 cut(s)	227, 263, 702
TauI	GCSGC	2 cut(s)	62, 592
TfiI	GAWTC	2 cut(s)	17, 86
Tru1I	TTAA	2 cut(s)	72, 218
Tru9I	TTAA	2 cut(s)	72, 218
TscAI	CASTG	1 cut(s)	54
TseFI	GTSAC	1 cut(s)	128
TseI	GCWGC	5 cut(s)	53, 56, 476, 509, 849
Tsp45I	GTSAC	1 cut(s)	128
TspDTI	ATGAA	4 cut(s)	135, 386, 482, 504
TspMI	CCCGGG	1 cut(s)	295
TspRI	CASTG	1 cut(s)	54
Van91I	CCANNNNNTGG	1 cut(s)	188
XapI	RAATTY	1 cut(s)	719
XceI	RCATGY	2 cut(s)	41, 846
XmaI	CCCGGG	1 cut(s)	295
XmnI	GAANNNNTTC	1 cut(s)	196
XspI	CTAG	1 cut(s)	126
ZrmI	AGTACT	2 cut(s)	229, 265

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.