RLG00000006630

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0001093
Physical Location & Seq
Reverse (-)
9199691 .. 9200701
1011 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000006630

Sequence Viewer

Length: 1011 bp
ATGGAAATCCCAGTAGTGAATAGAATAAGCGATTTCGAGTTGCCCAGCCCGTCTTTCCCGTCGCAGGCTTTCTCCATTTCCGGAATCGAAAAGGTCTACAGTGTCTGGACATGGGGCGCTCTAATACTCGCCGTAATAGCTTCCTTCGGCACCATCATCACTAGAATCAACTTTGTTATCATCCGACGGCTCCGCCACAAGACCGCCGAGCCTCTCTGCCTCCTACAAGAAGACGATTTCTCCGATATCGACGACGACGATGACGAAACATATTCCGTTTCCACGTCATCGTCTGTTTCCGACGAGGACGAGGAAGAAGAGGACGACAGAAGAGACGAAGATTTCAATGTCTCGGGAGCTGACCGGGGACAGAACCGTAATTTGAGGCTCCGCCGTGGCAGAAGCTTCGCGGGCTTGAACTTAAACCGGTTCTCTTGGTCCGACTTCGCCAGCGGCAAGAGCGTCGTGAAGCTCTGGGACAACTTAGCTTTAGGATTGGACCTTGATGACGACAGCGACGATGAATTTTCCGGCACCGGAAGAACCGTCTCCGTCTACGACATGAACAAACAGAAGAAGATAAACTCCTTCTTCGCCGGCAGCTTCCAGGTCCCGGCGGCCTCCACGTCCTCGCGGTCCACGATTCTCACGGCTGACACGAACGCCTCCGGGCGCGTAGCCTTGGGCGTGTGGGACACGCGCGTGGGCAGCAGGATCCCGACTATGCTCGCCGAGTGGGGCCCGCAGATCGGGAGAATCGTCGGAGTGTCGTCGGGCGGCGTCGACAAGGTTTACGTCAAGGATGACGTTACGGGGGCGCTAATGGTCGGTGACGTGAGGAAAGTGGGAGCTCCGTTACGAAACGTAACGGATGCTGACGTGAGCGATACGTGGTGGGACGCCGATGCGGTTATGGTCTCGGACGAGTGTTTTGATGAGTCGGCTGCCGCGAGTGGTTGCGACTCGGCCGTGACTCGGTGTTGTAGCGCGGTTAGGTCTTATCTGTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

337

Amino Acids

36.74

Weight (kDa)

4.42

Isoelectric Point (pI)

37.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 149, 533
AccI GTMKAC 3 cut(s) 96, 555, 783
AccII CGCG 7 cut(s) 410, 634, 675, 700, 702, 950, 989
AccIII TCCGGA 1 cut(s) 80
AclWI GGATC 2 cut(s) 709, 722
AcoI YGGCCR 1 cut(s) 966
AcsI RAATTY 1 cut(s) 524
AcyI GRCGYC 2 cut(s) 780, 900
AfiI CCNNNNNNNGG 4 cut(s) 64, 613, 749, 975
AgeI ACCGGT 1 cut(s) 426
AgsI TTSAA 2 cut(s) 346, 418
AjiI CACGTC 4 cut(s) 285, 627, 835, 880
AjnI CCWGG 1 cut(s) 606
AleI CACNNNNGTG 1 cut(s) 701
AluBI AGCT 7 cut(s) 140, 359, 405, 472, 488, 603, 851
AluI AGCT 7 cut(s) 140, 359, 405, 472, 488, 603, 851
Alw21I GWGCWC 1 cut(s) 853
Alw26I GTCTC 4 cut(s) 327, 355, 553, 922
AlwI GGATC 2 cut(s) 709, 722
AlwNI CAGNNNCTG 1 cut(s) 105
Ama87I CYCGRG 1 cut(s) 352
Aor13HI TCCGGA 1 cut(s) 80
AoxI GGCC 3 cut(s) 618, 739, 966
ApaI GGGCCC 1 cut(s) 743
ApeKI GCWGC 3 cut(s) 600, 708, 944
ApoI RAATTY 1 cut(s) 524
ArsI GACNNNNNNTTYG 2 cut(s) 914, 946
AsiGI ACCGGT 1 cut(s) 426
AspLEI GCGC 5 cut(s) 119, 675, 702, 820, 989
AspS9I GGNCC 6 cut(s) 438, 499, 610, 636, 739, 740
AsuC2I CCSGG 3 cut(s) 365, 614, 670
AsuHPI GGTGA 1 cut(s) 842
AvaI CYCGRG 1 cut(s) 352
AvaII GGWCC 4 cut(s) 438, 499, 610, 636
BaeGI GKGCMC 1 cut(s) 743
BamHI GGATCC 1 cut(s) 714
BanI GGYRCC 2 cut(s) 149, 533
BanII GRGCYC 2 cut(s) 743, 853
BbsI GAAGAC 1 cut(s) 237
Bbv12I GWGCWC 1 cut(s) 853
BbvI GCAGC 3 cut(s) 612, 720, 931
BccI CCATC 1 cut(s) 161
BceAI ACGGC 5 cut(s) 116, 203, 378, 666, 953
BcgI CGANNNNNNTGC 4 cut(s) 388, 422, 445, 479
BciT130I CCWGG 1 cut(s) 608
BcnI CCSGG 3 cut(s) 365, 614, 670
BcoDI GTCTC 4 cut(s) 327, 355, 553, 922
BfaI CTAG 1 cut(s) 162
BfmI CTRYAG 1 cut(s) 97
BfoI RGCGCY 2 cut(s) 120, 821
BisI GCNGC 7 cut(s) 454, 601, 618, 709, 778, 945, 948
BlsI GCNGC 7 cut(s) 455, 602, 619, 710, 779, 946, 949
Bme1390I CCNGG 4 cut(s) 365, 608, 614, 670
Bme18I GGWCC 4 cut(s) 438, 499, 610, 636
BmeT110I CYCGRG 1 cut(s) 352
BmgBI CACGTC 4 cut(s) 285, 627, 835, 880
BmgT120I GGNCC 6 cut(s) 438, 499, 610, 636, 739, 740
BmiI GGNNCC 8 cut(s) 151, 191, 389, 535, 612, 716, 740, 741
BmrFI CCNGG 4 cut(s) 365, 608, 614, 670
BmrI ACTGGG 1 cut(s) 5
BmsI GCATC 2 cut(s) 862, 895
BmuI ACTGGG 1 cut(s) 5
BpiI GAAGAC 1 cut(s) 237
BpuMI CCSGG 3 cut(s) 365, 614, 670
BsaAI YACGTR 1 cut(s) 891
BsaHI GRCGYC 2 cut(s) 780, 900
BsaI GGTCTC 1 cut(s) 922
BsaJI CCNNGG 3 cut(s) 364, 394, 681
BsaWI WCCGGW 3 cut(s) 80, 426, 536
BsaXI ACNNNNNCTCC 2 cut(s) 224, 254
Bsc4I CCNNNNNNNGG 4 cut(s) 64, 613, 749, 975
Bse118I RCCGGY 2 cut(s) 426, 596
Bse1I ACTGG 1 cut(s) 11
BseAI TCCGGA 1 cut(s) 80
BseBI CCWGG 1 cut(s) 608
BseDI CCNNGG 3 cut(s) 364, 394, 681
BseGI GGATG 3 cut(s) 180, 808, 877
BseLI CCNNNNNNNGG 4 cut(s) 64, 613, 749, 975
BseNI ACTGG 1 cut(s) 11
BseSI GKGCMC 1 cut(s) 743
BseX3I CGGCCG 1 cut(s) 966
BseXI GCAGC 3 cut(s) 612, 720, 931
BseYI CCCAGC 1 cut(s) 44
Bsh1236I CGCG 7 cut(s) 410, 634, 675, 700, 702, 950, 989
Bsh1285I CGRYCG 1 cut(s) 969
BshFI GGCC 3 cut(s) 620, 741, 968
BshNI GGYRCC 2 cut(s) 149, 533
BshTI ACCGGT 1 cut(s) 426
BsiEI CGRYCG 1 cut(s) 969
BsiHKAI GWGCWC 1 cut(s) 853
BsiHKCI CYCGRG 1 cut(s) 352
BsiSI CCGG 8 cut(s) 81, 364, 427, 531, 537, 597, 614, 669
BslFI GGGAC 5 cut(s) 381, 491, 596, 707, 911
BslI CCNNNNNNNGG 4 cut(s) 64, 613, 749, 975
BsmAI GTCTC 4 cut(s) 327, 355, 553, 922
BsmBI CGTCTC 2 cut(s) 327, 553
BsmFI GGGAC 5 cut(s) 381, 491, 596, 707, 911
BsnI GGCC 3 cut(s) 620, 741, 968
Bso31I GGTCTC 1 cut(s) 922
BsoBI CYCGRG 1 cut(s) 352
Bsp120I GGGCCC 1 cut(s) 739
Bsp1286I GDGCHC 2 cut(s) 743, 853
Bsp13I TCCGGA 1 cut(s) 80
Bsp143I GATC 2 cut(s) 714, 747
BspANI GGCC 3 cut(s) 620, 741, 968
BspEI TCCGGA 1 cut(s) 80
BspFNI CGCG 7 cut(s) 410, 634, 675, 700, 702, 950, 989
BspLI GGNNCC 8 cut(s) 151, 191, 389, 535, 612, 716, 740, 741
BspPI GGATC 2 cut(s) 709, 722
BspT107I GGYRCC 2 cut(s) 149, 533
BspTNI GGTCTC 1 cut(s) 922
BsrFI RCCGGY 2 cut(s) 426, 596
BsrI ACTGG 1 cut(s) 11
BssAI RCCGGY 2 cut(s) 426, 596
BssECI CCNNGG 3 cut(s) 364, 394, 681
BssMI GATC 2 cut(s) 714, 747
BssNI GRCGYC 2 cut(s) 780, 900
BssT1I CCWWGG 1 cut(s) 681
Bst2UI CCWGG 1 cut(s) 608
Bst4CI ACNGT 3 cut(s) 101, 377, 547
Bst6I CTCTTC 2 cut(s) 312, 325
BstACI GRCGYC 2 cut(s) 780, 900
BstBAI YACGTR 1 cut(s) 891
BstC8I GCNNGC 6 cut(s) 66, 412, 451, 598, 729, 743
BstDEI CTNAG 1 cut(s) 484
BstDSI CCRYGG 1 cut(s) 394
BstF5I GGATG 3 cut(s) 180, 808, 877
BstFNI CGCG 7 cut(s) 410, 634, 675, 700, 702, 950, 989
BstH2I RGCGCY 2 cut(s) 120, 821
BstHHI GCGC 5 cut(s) 119, 675, 702, 820, 989
BstKTI GATC 2 cut(s) 717, 750
BstMAI GTCTC 4 cut(s) 327, 355, 553, 922
BstMBI GATC 2 cut(s) 714, 747
BstMCI CGRYCG 1 cut(s) 969
BstMWI GCNNNNNNNGC 4 cut(s) 137, 411, 459, 708
BstNI CCWGG 1 cut(s) 608
BstSCI CCNGG 4 cut(s) 363, 606, 612, 668
BstSFI CTRYAG 1 cut(s) 97
BstSLI GKGCMC 1 cut(s) 743
BstUI CGCG 7 cut(s) 410, 634, 675, 700, 702, 950, 989
BstV1I GCAGC 3 cut(s) 612, 720, 931
BstV2I GAAGAC 1 cut(s) 237
BstX2I RGATCY 1 cut(s) 714
BstYI RGATCY 1 cut(s) 714
BstZI CGGCCG 1 cut(s) 966
BsuRI GGCC 3 cut(s) 620, 741, 968
BtgI CCRYGG 1 cut(s) 394
BtrI CACGTC 4 cut(s) 285, 627, 835, 880
BtsCI GGATG 3 cut(s) 180, 808, 877
BtsIMutI CAGTG 1 cut(s) 106
Cac8I GCNNGC 6 cut(s) 66, 412, 451, 598, 729, 743
CaiI CAGNNNCTG 1 cut(s) 105
CfoI GCGC 5 cut(s) 119, 675, 702, 820, 989
Cfr10I RCCGGY 2 cut(s) 426, 596
Cfr13I GGNCC 6 cut(s) 438, 499, 610, 636, 739, 740
CseI GACGC 3 cut(s) 451, 769, 908
CspAI ACCGGT 1 cut(s) 426
CviAII CATG 2 cut(s) 111, 562
DdeI CTNAG 1 cut(s) 484
DpnI GATC 2 cut(s) 716, 749
DpnII GATC 2 cut(s) 714, 747
EaeI YGGCCR 1 cut(s) 966
EagI CGGCCG 1 cut(s) 966
Eam1104I CTCTTC 2 cut(s) 312, 325
EarI CTCTTC 2 cut(s) 312, 325
EciI GGCGGA 2 cut(s) 182, 380
Ecl136II GAGCTC 1 cut(s) 851
EclXI CGGCCG 1 cut(s) 966
Eco130I CCWWGG 1 cut(s) 681
Eco24I GRGCYC 2 cut(s) 743, 853
Eco31I GGTCTC 1 cut(s) 922
Eco32I GATATC 1 cut(s) 247
Eco47I GGWCC 4 cut(s) 438, 499, 610, 636
Eco52I CGGCCG 1 cut(s) 966
Eco53kI GAGCTC 1 cut(s) 851
Eco88I CYCGRG 1 cut(s) 352
EcoICRI GAGCTC 1 cut(s) 851
EcoO109I RGGNCCY 2 cut(s) 610, 739
EcoRII CCWGG 1 cut(s) 606
EcoRV GATATC 1 cut(s) 247
EcoT14I CCWWGG 1 cut(s) 681
EcoT38I GRGCYC 2 cut(s) 743, 853
ErhI CCWWGG 1 cut(s) 681
Esp3I CGTCTC 2 cut(s) 327, 553
FaeI CATG 2 cut(s) 114, 565
FaiI YATR 6 cut(s) 112, 271, 563, 725, 914, 1009
FaqI GGGAC 5 cut(s) 381, 491, 596, 707, 911
FatI CATG 2 cut(s) 110, 561
FauI CCCGC 2 cut(s) 403, 750
FblI GTMKAC 3 cut(s) 96, 555, 783
Fnu4HI GCNGC 7 cut(s) 454, 601, 618, 709, 778, 945, 948
FokI GGATG 3 cut(s) 167, 815, 884
FriOI GRGCYC 2 cut(s) 743, 853
Fsp4HI GCNGC 7 cut(s) 454, 601, 618, 709, 778, 945, 948
FspBI CTAG 1 cut(s) 162
GlaI GCGC 5 cut(s) 118, 674, 701, 819, 988
GluI GCNGC 7 cut(s) 454, 601, 618, 709, 778, 945, 948
GsaI CCCAGC 1 cut(s) 48
HaeII RGCGCY 2 cut(s) 120, 821
HaeIII GGCC 3 cut(s) 620, 741, 968
HapII CCGG 8 cut(s) 81, 364, 427, 531, 537, 597, 614, 669
HgaI GACGC 3 cut(s) 451, 769, 908
HhaI GCGC 5 cut(s) 119, 675, 702, 820, 989
Hin1I GRCGYC 2 cut(s) 780, 900
Hin1II CATG 2 cut(s) 114, 565
Hin6I GCGC 5 cut(s) 117, 673, 700, 818, 987
HinP1I GCGC 5 cut(s) 117, 673, 700, 818, 987
HincII GTYRAC 1 cut(s) 784
HindII GTYRAC 1 cut(s) 784
HindIII AAGCTT 1 cut(s) 403
HinfI GANTC 7 cut(s) 84, 165, 643, 756, 938, 962, 973
HpaII CCGG 8 cut(s) 81, 364, 427, 531, 537, 597, 614, 669
HphI GGTGA 1 cut(s) 842
Hpy166II GTNNAC 5 cut(s) 97, 556, 639, 784, 793
Hpy188I TCNGA 6 cut(s) 185, 244, 301, 442, 764, 922
Hpy188III TCNNGA 6 cut(s) 81, 106, 354, 466, 718, 751
Hpy8I GTNNAC 5 cut(s) 97, 556, 639, 784, 793
HpyAV CCTTC 2 cut(s) 154, 598
HpyCH4III ACNGT 3 cut(s) 101, 377, 547
HpyCH4IV ACGT 8 cut(s) 284, 626, 795, 807, 834, 864, 879, 890
HpyF10VI GCNNNNNNNGC 4 cut(s) 137, 411, 459, 708
HpyF3I CTNAG 1 cut(s) 484
HpySE526I ACGT 8 cut(s) 284, 626, 795, 807, 834, 864, 879, 890
Hsp92I GRCGYC 2 cut(s) 780, 900
Hsp92II CATG 2 cut(s) 114, 565
HspAI GCGC 5 cut(s) 117, 673, 700, 818, 987
Kpn2I TCCGGA 1 cut(s) 80
KroI GCCGGC 1 cut(s) 596
KroNI GCCGGC 1 cut(s) 598
Kzo9I GATC 2 cut(s) 714, 747
LmnI GCTCC 5 cut(s) 195, 356, 393, 848, 856
Lsp1109I GCAGC 3 cut(s) 612, 720, 931
LweI GCATC 2 cut(s) 862, 895
MaeI CTAG 1 cut(s) 162
MaeII ACGT 8 cut(s) 284, 626, 795, 807, 834, 864, 879, 890
MaeIII GTNAC 5 cut(s) 808, 830, 855, 865, 970
MalI GATC 2 cut(s) 716, 749
MboI GATC 2 cut(s) 714, 747
MboII GAAGA 9 cut(s) 242, 326, 329, 342, 350, 552, 583, 586, 589
MflI RGATCY 1 cut(s) 714
MhlI GDGCHC 2 cut(s) 743, 853
MluCI AATT 2 cut(s) 379, 524
MlyI GAGTC 3 cut(s) 947, 956, 967
MmeI TCCRAC 4 cut(s) 208, 324, 465, 742
MroI TCCGGA 1 cut(s) 80
MroNI GCCGGC 1 cut(s) 596
MseI TTAA 1 cut(s) 422
MslI CAYNNNNRTG 1 cut(s) 701
MspA1I CMGCKG 1 cut(s) 453
MspI CCGG 8 cut(s) 81, 364, 427, 531, 537, 597, 614, 669
MspR9I CCNGG 4 cut(s) 365, 608, 614, 670
MvaI CCWGG 1 cut(s) 608
MvnI CGCG 7 cut(s) 410, 634, 675, 700, 702, 950, 989
MwoI GCNNNNNNNGC 4 cut(s) 137, 411, 459, 708
NaeI GCCGGC 1 cut(s) 598
NciI CCSGG 3 cut(s) 365, 614, 670
NdeII GATC 2 cut(s) 714, 747
NgoMIV GCCGGC 1 cut(s) 596
NlaIII CATG 2 cut(s) 114, 565
NlaIV GGNNCC 8 cut(s) 151, 191, 389, 535, 612, 716, 740, 741
NmeAIII GCCGAG 3 cut(s) 232, 757, 944
NmuCI GTSAC 2 cut(s) 830, 970
OliI CACNNNNGTG 1 cut(s) 701
PcsI WCGNNNNNNNCGW 8 cut(s) 240, 255, 261, 516, 638, 656, 756, 947
PdiI GCCGGC 1 cut(s) 598
PfeI GAWTC 4 cut(s) 84, 165, 643, 756
PinAI ACCGGT 1 cut(s) 426
PkrI GCNGC 7 cut(s) 455, 602, 619, 710, 779, 946, 949
PleI GAGTC 3 cut(s) 946, 956, 967
PpsI GAGTC 3 cut(s) 946, 956, 967
Ppu21I YACGTR 1 cut(s) 891
PpuMI RGGWCCY 1 cut(s) 610
Psp124BI GAGCTC 1 cut(s) 853
Psp5II RGGWCCY 1 cut(s) 610
Psp6I CCWGG 1 cut(s) 606
PspFI CCCAGC 1 cut(s) 44
PspGI CCWGG 1 cut(s) 606
PspN4I GGNNCC 8 cut(s) 151, 191, 389, 535, 612, 716, 740, 741
PspOMI GGGCCC 1 cut(s) 739
PspPI GGNCC 6 cut(s) 438, 499, 610, 636, 739, 740
PspPPI RGGWCCY 1 cut(s) 610
PstNI CAGNNNCTG 1 cut(s) 105
PsuI RGATCY 1 cut(s) 714
RseI CAYNNNNRTG 1 cut(s) 701
SacI GAGCTC 1 cut(s) 853
SalI GTCGAC 1 cut(s) 782
SaqAI TTAA 1 cut(s) 422
SatI GCNGC 7 cut(s) 454, 601, 618, 709, 778, 945, 948
Sau3AI GATC 2 cut(s) 714, 747
Sau96I GGNCC 6 cut(s) 438, 499, 610, 636, 739, 740
SchI GAGTC 3 cut(s) 947, 956, 967
ScrFI CCNGG 4 cut(s) 365, 608, 614, 670
SduI GDGCHC 2 cut(s) 743, 853
SfaNI GCATC 2 cut(s) 862, 895
SfcI CTRYAG 1 cut(s) 97
SinI GGWCC 4 cut(s) 438, 499, 610, 636
SmiMI CAYNNNNRTG 1 cut(s) 701
Sse9I AATT 2 cut(s) 379, 524
SspMI CTAG 1 cut(s) 162
SstI GAGCTC 1 cut(s) 853
StyD4I CCNGG 4 cut(s) 363, 606, 612, 668
StyI CCWWGG 1 cut(s) 681
TaaI ACNGT 3 cut(s) 101, 377, 547
TaiI ACGT 8 cut(s) 287, 629, 798, 810, 837, 867, 882, 893
TaqI TCGA 4 cut(s) 36, 87, 249, 783
TasI AATT 2 cut(s) 379, 524
TauI GCSGC 4 cut(s) 456, 620, 780, 950
TfiI GAWTC 4 cut(s) 84, 165, 643, 756
Tru1I TTAA 1 cut(s) 422
Tru9I TTAA 1 cut(s) 422
TscAI CASTG 1 cut(s) 106
TseFI GTSAC 2 cut(s) 830, 970
TseI GCWGC 3 cut(s) 600, 708, 944
Tsp45I GTSAC 2 cut(s) 830, 970
TspDTI ATGAA 2 cut(s) 537, 578
TspGWI ACGGA 4 cut(s) 265, 541, 843, 884
TspRI CASTG 1 cut(s) 106
VpaK11BI GGWCC 4 cut(s) 438, 499, 610, 636
XapI RAATTY 1 cut(s) 524
XmiI GTMKAC 3 cut(s) 96, 555, 783
XspI CTAG 1 cut(s) 162
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.