Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000869.1

Orthogroup ID

OG0001093

Physical Location & Seq

Genomic Coordinates Reverse (-)

194304 .. 195747

Gene Structure 1444 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000869.1_g000026.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

atgttggttacgaggtcgtatcgtgacactcggaattggttatcgttctttgtagcctggggtgataggcgtaaaaattggttaggggttggacattttcgattcatggatgttactattagtgacagacctataactatggatcttggtaggaatatgtgtcgtggtgttgttgataccacaaccgaatcggaccgggttgttgtagatgacagtgccggcgctggcggtggggacggggagctcacgggagaggccaacaacaccgtttcggaggtgggagtcaccgaggaaggtgaggttgcggaagttaaaaaggaggggaagttgaagctgaggttctcggcgagggaggaagaagaagagggagaggagagagaaagcaagaagctttattgggttcatgatatggccccgcacatcagcttcgactttagctccgggtcggggtcgtcgatccctgggtccgacttcgagctgattttgcagttgctgcagagagggtttgtgatgtcgtcgaccgtggaagggatcggcaagtgtagcaaatcggaggtggagatcggagtgaatcacagaggacgcgaacgcttacgcagcattggccgcggcgatagatctcagcattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1005

Protein Analysis

209

Amino Acids

23.31

Weight (kDa)

5.37

Isoelectric Point (pI)

37.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001093)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G25400 AT1G25400 AT1G68440
fragaria_vesca	FvH4_4g27210 FvH4_5g09320 FvH4_5g18320 FvH4_5g36190 FvH4_5g36660 FvH4_6g02080 FvH4_6g18410 FvH4_6g37922 FvH4_6g48101
malus_domestica	MD13G1040500.v1.1 MD16G1041500.v1.1
prunus_persica	Prupe.1G312600_v2.0.a1
pyrus_communis	pycom13g03470 pycom16g03590
rosa_chinensis	RchiOBHm_Chr2g0089781 RchiOBHm_Chr2g0161601 RchiOBHm_Chr4g0435001 RchiOBHm_Chr5g0057351 RchiOBHm_Chr6g0279821 RchiOBHm_Chr7g0227101
rosa_laevigata	RLG00000006630 RLG00000007926
rosa_multiflora	Rmu_co7981798.1_g000001 Rmu_co8240437.1_g000001 Rmu_sc0000400.1_g000034 Rmu_sc0000869.1_g000026 Rmu_sc0001246.1_g000017 Rmu_sc0002430.1_g000001 Rmu_sc0004574.1_g000051 Rmu_sc0009868.1_g000002 Rmu_sc0010765.1_g000001
rosa_roxburghii	Rroxscaffold_1G00019050 Rroxscaffold_2G00088100 Rroxscaffold_5G00376170
rosa_rugosa	Rorug02G0108200 Rorug02G0398300 Rorug02G0435100 Rorug03G0104500 Rorug03G0112000 Rorug03G0209100 Rorug04G0021800 Rorug04G0169800 Rorug04G0281500 Rorug04G0390300 Rorug05G0263200 Rorug05G0281200 Rorug06G0472700 Rorug07G0039700 Rorug07G0207300
rosa_samantha	Rh4AG337000 Rh4BG161500 Rh4BG344900 Rh4CG359600 Rh4DG339400 Rh5DG431200
rosa_wichuraiana	Rw4G029380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	518
AccII	CGCG	2 cut(s)	585, 609
AciI	CCGC	5 cut(s)	228, 305, 416, 607, 609
AclWI	GGATC	3 cut(s)	150, 451, 539
AcoI	YGGCCR	1 cut(s)	604
AfiI	CCNNNNNNNGG	2 cut(s)	447, 528
AgsI	TTSAA	1 cut(s)	331
AjnI	CCWGG	2 cut(s)	56, 460
AluBI	AGCT	6 cut(s)	244, 334, 391, 426, 438, 478
AluI	AGCT	6 cut(s)	244, 334, 391, 426, 438, 478
Alw21I	GWGCWC	1 cut(s)	246
AlwI	GGATC	3 cut(s)	150, 451, 539
AlwNI	CAGNNNCTG	1 cut(s)	493
AoxI	GGCC	3 cut(s)	255, 411, 604
ApeKI	GCWGC	2 cut(s)	493, 597
AspLEI	GCGC	1 cut(s)	224
AspS9I	GGNCC	3 cut(s)	193, 412, 465
AsuC2I	CCSGG	2 cut(s)	197, 442
AsuHPI	GGTGA	3 cut(s)	74, 277, 308
AvaII	GGWCC	2 cut(s)	193, 465
BanII	GRGCYC	1 cut(s)	246
Bbv12I	GWGCWC	1 cut(s)	246
BbvCI	CCTCAGC	1 cut(s)	335
BbvI	GCAGC	2 cut(s)	480, 609
BciT130I	CCWGG	2 cut(s)	58, 462
BcnI	CCSGG	2 cut(s)	197, 442
BfmI	CTRYAG	1 cut(s)	494
BfoI	RGCGCY	1 cut(s)	225
BglII	AGATCT	1 cut(s)	617
BisI	GCNGC	4 cut(s)	494, 598, 607, 610
BlsI	GCNGC	4 cut(s)	495, 599, 608, 611
Bme1390I	CCNGG	4 cut(s)	58, 197, 442, 462
Bme18I	GGWCC	2 cut(s)	193, 465
BmgT120I	GGNCC	3 cut(s)	193, 412, 465
BmiI	GGNNCC	2 cut(s)	414, 466
BmrFI	CCNGG	4 cut(s)	58, 197, 442, 462
Bpu10I	CCTNAGC	1 cut(s)	335
BpuMI	CCSGG	2 cut(s)	197, 442
BsaJI	CCNNGG	6 cut(s)	57, 288, 460, 461, 522, 607
BsaXI	ACNNNNNCTCC	4 cut(s)	311, 341, 422, 452
Bsc4I	CCNNNNNNNGG	2 cut(s)	447, 528
Bse118I	RCCGGY	1 cut(s)	218
BseBI	CCWGG	2 cut(s)	58, 462
BseDI	CCNNGG	6 cut(s)	57, 288, 460, 461, 522, 607
BseGI	GGATG	1 cut(s)	115
BseLI	CCNNNNNNNGG	2 cut(s)	447, 528
BseMII	CTCAG	1 cut(s)	326
BseRI	GAGGAG	1 cut(s)	386
BseXI	GCAGC	2 cut(s)	480, 609
Bsh1236I	CGCG	2 cut(s)	585, 609
Bsh1285I	CGRYCG	1 cut(s)	522
BshFI	GGCC	3 cut(s)	257, 413, 606
BsiEI	CGRYCG	1 cut(s)	522
BsiHKAI	GWGCWC	1 cut(s)	246
BsiSI	CCGG	3 cut(s)	196, 219, 441
BslFI	GGGAC	1 cut(s)	248
BslI	CCNNNNNNNGG	2 cut(s)	447, 528
BsmFI	GGGAC	1 cut(s)	248
BsnI	GGCC	3 cut(s)	257, 413, 606
Bsp1286I	GDGCHC	1 cut(s)	246
Bsp143I	GATC	5 cut(s)	142, 456, 531, 561, 617
BspACI	CCGC	5 cut(s)	228, 305, 416, 607, 609
BspANI	GGCC	3 cut(s)	257, 413, 606
BspCNI	CTCAG	1 cut(s)	327
BspFNI	CGCG	2 cut(s)	585, 609
BspHI	TCATGA	1 cut(s)	403
BspLI	GGNNCC	2 cut(s)	414, 466
BspMAI	CTGCAG	1 cut(s)	498
BspPI	GGATC	3 cut(s)	150, 451, 539
BsrFI	RCCGGY	1 cut(s)	218
BssAI	RCCGGY	1 cut(s)	218
BssECI	CCNNGG	6 cut(s)	57, 288, 460, 461, 522, 607
BssMI	GATC	5 cut(s)	142, 456, 531, 561, 617
Bst2UI	CCWGG	2 cut(s)	58, 462
Bst4CI	ACNGT	3 cut(s)	215, 268, 523
Bst6I	CTCTTC	1 cut(s)	357
BstAPI	GCANNNNNTGC	1 cut(s)	493
BstC8I	GCNNGC	2 cut(s)	220, 226
BstDEI	CTNAG	2 cut(s)	335, 621
BstDSI	CCRYGG	2 cut(s)	522, 607
BstF5I	GGATG	1 cut(s)	115
BstFNI	CGCG	2 cut(s)	585, 609
BstH2I	RGCGCY	1 cut(s)	225
BstHHI	GCGC	1 cut(s)	224
BstKTI	GATC	5 cut(s)	145, 459, 534, 564, 620
BstMBI	GATC	5 cut(s)	142, 456, 531, 561, 617
BstMCI	CGRYCG	1 cut(s)	522
BstMWI	GCNNNNNNNGC	6 cut(s)	484, 493, 543, 597, 603, 606
BstNI	CCWGG	2 cut(s)	58, 462
BstSCI	CCNGG	4 cut(s)	56, 195, 440, 460
BstSFI	CTRYAG	1 cut(s)	494
BstUI	CGCG	2 cut(s)	585, 609
BstV1I	GCAGC	2 cut(s)	480, 609
BstX2I	RGATCY	2 cut(s)	142, 617
BstYI	RGATCY	2 cut(s)	142, 617
BsuRI	GGCC	3 cut(s)	257, 413, 606
BtgI	CCRYGG	2 cut(s)	522, 607
BtsCI	GGATG	1 cut(s)	115
BtsIMutI	CAGTG	1 cut(s)	220
Cac8I	GCNNGC	2 cut(s)	220, 226
CaiI	CAGNNNCTG	1 cut(s)	493
CciI	TCATGA	1 cut(s)	403
CfoI	GCGC	1 cut(s)	224
Cfr10I	RCCGGY	1 cut(s)	218
Cfr13I	GGNCC	3 cut(s)	193, 412, 465
Cfr42I	CCGCGG	1 cut(s)	610
CpoI	CGGWCCG	1 cut(s)	193
CseI	GACGC	1 cut(s)	591
CspI	CGGWCCG	1 cut(s)	193
CviAII	CATG	2 cut(s)	106, 404
DdeI	CTNAG	2 cut(s)	335, 621
DpnI	GATC	5 cut(s)	144, 458, 533, 563, 619
DpnII	GATC	5 cut(s)	142, 456, 531, 561, 617
EaeI	YGGCCR	1 cut(s)	604
Eam1104I	CTCTTC	1 cut(s)	357
EarI	CTCTTC	1 cut(s)	357
Ecl136II	GAGCTC	1 cut(s)	244
Eco24I	GRGCYC	1 cut(s)	246
Eco47I	GGWCC	2 cut(s)	193, 465
Eco53kI	GAGCTC	1 cut(s)	244
EcoICRI	GAGCTC	1 cut(s)	244
EcoRII	CCWGG	2 cut(s)	56, 460
EcoT38I	GRGCYC	1 cut(s)	246
FaeI	CATG	2 cut(s)	109, 407
FaiI	YATR	6 cut(s)	107, 134, 140, 158, 405, 410
FaqI	GGGAC	1 cut(s)	248
FatI	CATG	2 cut(s)	105, 403
FauI	CCCGC	1 cut(s)	423
FblI	GTMKAC	1 cut(s)	518
Fnu4HI	GCNGC	4 cut(s)	494, 598, 607, 610
FokI	GGATG	1 cut(s)	122
FriOI	GRGCYC	1 cut(s)	246
Fsp4HI	GCNGC	4 cut(s)	494, 598, 607, 610
GlaI	GCGC	1 cut(s)	223
GluI	GCNGC	4 cut(s)	494, 598, 607, 610
HaeII	RGCGCY	1 cut(s)	225
HaeIII	GGCC	3 cut(s)	257, 413, 606
HapII	CCGG	3 cut(s)	196, 219, 441
HgaI	GACGC	1 cut(s)	591
HhaI	GCGC	1 cut(s)	224
Hin1II	CATG	2 cut(s)	109, 407
Hin6I	GCGC	1 cut(s)	222
HinP1I	GCGC	1 cut(s)	222
HincII	GTYRAC	1 cut(s)	519
HindII	GTYRAC	1 cut(s)	519
HindIII	AAGCTT	1 cut(s)	389
HinfI	GANTC	4 cut(s)	102, 188, 282, 571
HpaII	CCGG	3 cut(s)	196, 219, 441
HphI	GGTGA	3 cut(s)	74, 277, 308
Hpy166II	GTNNAC	1 cut(s)	519
Hpy188I	TCNGA	6 cut(s)	33, 193, 274, 469, 553, 566
Hpy188III	TCNNGA	2 cut(s)	23, 404
Hpy8I	GTNNAC	1 cut(s)	519
Hpy99I	CGWCG	2 cut(s)	457, 520
HpyAV	CCTTC	2 cut(s)	287, 521
HpyCH4III	ACNGT	3 cut(s)	215, 268, 523
HpyCH4V	TGCA	2 cut(s)	487, 496
HpyF10VI	GCNNNNNNNGC	6 cut(s)	484, 493, 543, 597, 603, 606
HpyF3I	CTNAG	2 cut(s)	335, 621
Hsp92II	CATG	2 cut(s)	109, 407
HspAI	GCGC	1 cut(s)	222
KroI	GCCGGC	1 cut(s)	218
KroNI	GCCGGC	1 cut(s)	220
KspI	CCGCGG	1 cut(s)	610
Kzo9I	GATC	5 cut(s)	142, 456, 531, 561, 617
LmnI	GCTCC	2 cut(s)	241, 443
LpnPI	CCDG	8 cut(s)	43, 70, 209, 210, 232, 447, 454, 474
Lsp1109I	GCAGC	2 cut(s)	480, 609
MaeIII	GTNAC	5 cut(s)	7, 23, 112, 122, 283
MalI	GATC	5 cut(s)	144, 458, 533, 563, 619
MboI	GATC	5 cut(s)	142, 456, 531, 561, 617
MboII	GAAGA	3 cut(s)	368, 371, 374
MflI	RGATCY	2 cut(s)	142, 617
MhlI	GDGCHC	1 cut(s)	246
MluCI	AATT	2 cut(s)	34, 76
MlyI	GAGTC	1 cut(s)	291
MmeI	TCCRAC	2 cut(s)	70, 492
MroNI	GCCGGC	1 cut(s)	218
MseI	TTAA	2 cut(s)	312, 628
MspA1I	CMGCKG	1 cut(s)	609
MspI	CCGG	3 cut(s)	196, 219, 441
MspR9I	CCNGG	4 cut(s)	58, 197, 442, 462
MvaI	CCWGG	2 cut(s)	58, 462
MvnI	CGCG	2 cut(s)	585, 609
MwoI	GCNNNNNNNGC	6 cut(s)	484, 493, 543, 597, 603, 606
NaeI	GCCGGC	1 cut(s)	220
NciI	CCSGG	2 cut(s)	197, 442
NdeII	GATC	5 cut(s)	142, 456, 531, 561, 617
NgoMIV	GCCGGC	1 cut(s)	218
NlaIII	CATG	2 cut(s)	109, 407
NlaIV	GGNNCC	2 cut(s)	414, 466
NmeAIII	GCCGAG	1 cut(s)	323
NmuCI	GTSAC	3 cut(s)	23, 122, 283
PagI	TCATGA	1 cut(s)	403
PasI	CCCWGGG	1 cut(s)	461
PcsI	WCGNNNNNNNCGW	1 cut(s)	452
PdiI	GCCGGC	1 cut(s)	220
PfeI	GAWTC	3 cut(s)	102, 188, 571
PkrI	GCNGC	4 cut(s)	495, 599, 608, 611
PleI	GAGTC	1 cut(s)	290
PpsI	GAGTC	1 cut(s)	290
Psp124BI	GAGCTC	1 cut(s)	246
Psp6I	CCWGG	2 cut(s)	56, 460
PspGI	CCWGG	2 cut(s)	56, 460
PspN4I	GGNNCC	2 cut(s)	414, 466
PspPI	GGNCC	3 cut(s)	193, 412, 465
PstI	CTGCAG	1 cut(s)	498
PstNI	CAGNNNCTG	1 cut(s)	493
PsuI	RGATCY	2 cut(s)	142, 617
Rsr2I	CGGWCCG	1 cut(s)	193
RsrII	CGGWCCG	1 cut(s)	193
SacI	GAGCTC	1 cut(s)	246
SacII	CCGCGG	1 cut(s)	610
SalI	GTCGAC	1 cut(s)	517
SaqAI	TTAA	2 cut(s)	312, 628
SatI	GCNGC	4 cut(s)	494, 598, 607, 610
Sau3AI	GATC	5 cut(s)	142, 456, 531, 561, 617
Sau96I	GGNCC	3 cut(s)	193, 412, 465
SchI	GAGTC	1 cut(s)	291
ScrFI	CCNGG	4 cut(s)	58, 197, 442, 462
SduI	GDGCHC	1 cut(s)	246
SfcI	CTRYAG	1 cut(s)	494
Sfr303I	CCGCGG	1 cut(s)	610
SgrBI	CCGCGG	1 cut(s)	610
SinI	GGWCC	2 cut(s)	193, 465
Sse9I	AATT	2 cut(s)	34, 76
SsiI	CCGC	5 cut(s)	228, 305, 416, 607, 609
SstI	GAGCTC	1 cut(s)	246
StyD4I	CCNGG	4 cut(s)	56, 195, 440, 460
TaaI	ACNGT	3 cut(s)	215, 268, 523
TaqI	TCGA	5 cut(s)	100, 429, 455, 474, 518
TasI	AATT	2 cut(s)	34, 76
TauI	GCSGC	2 cut(s)	609, 612
TfiI	GAWTC	3 cut(s)	102, 188, 571
Tru1I	TTAA	2 cut(s)	312, 628
Tru9I	TTAA	2 cut(s)	312, 628
TscAI	CASTG	1 cut(s)	220
TseFI	GTSAC	3 cut(s)	23, 122, 283
TseI	GCWGC	2 cut(s)	493, 597
Tsp45I	GTSAC	3 cut(s)	23, 122, 283
TspDTI	ATGAA	2 cut(s)	94, 392
TspRI	CASTG	1 cut(s)	220
VpaK11BI	GGWCC	2 cut(s)	193, 465
XmiI	GTMKAC	1 cut(s)	518

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.