Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0001093

Physical Location & Seq

Genomic Coordinates Forward (+)

32142953 .. 32145971

Gene Structure 3019 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0281200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1044 bp

ATGGAAAAAGGAAAAGCCCTCGTCTCCACAACGATTGCTTTGGCTAAATTGGATTTGAATCCCAAATCAAACCCCATGGTTCAAAACCCTCAATCTCAATCCTCCAGAACACAGCTTGGAAGGTCAAAATCTCCTCCCACTTTACTCAATTTGTGTCTTGGAGTTGTTGGTAGTCACTTGGAGGATATCATCCCCCATTTGGCTGACATTGCACTTGACTTTCCACCAGAAATCAAGAGGGTACTGGTGGCCATTGCGAGAAGAAGAAAGTTACTCAAGGATGATGTTATTATTGCATTAGCTGATGAGAGCTGGGACGTTCTTGACCTCTCTGCATCAGATGTTTCAGATTTGGGCTTAGCAAAAGTGGCTGAGATATGTGGATCTCTTCGAGCTGTTGATATTAGCCGGTGTGATAATATTACTGCTGTTGGGGTTTCTGAACTTGTGCACCGCTGTCTTTCATTGGAGACATTGAGATGTGGAGGGAGCCGGAATAGTGATCGCACTGCACGCAGGTGCTTGGATGTATTAAAACCGAAGTTGAACAATGTAGAGGGAGATTCCTGGGAAGAACTGAAGACCGAAGAACTTGTTACTGTTGCAGATACATTGAGGTGGCTTGTATGGCCGCAGATTGATAAAGATTCCTTGGAAAGATATTCCACTGAATGCCCACGGATTATAGTAAATCCAAAGCCATCCCCCTTTGGATTCAGAGGAACTCAAGTTCCCTGGGAAGCATTACCAGATATCCAATTGGATAATTCTGTGGTCAAGGATATTGATCCGAAGACATGGGTGACATGGGGTTTTTTACCAAGGGCAATGCCTCCACCTCTTTCAATCTCAGGTCACAAGGAATTGTCTTTGGCTGAAAAGTTCAGACTTGCATTTCAAGAAAGGGATAGCCGGTTAGCTCTAAAGCGTGCTAAAAATGCAAGGCAACATCAGCGACGTGCAGCGAGGGAGAGGATGATGATGGATACAGGAAGGAAGGCATTAGCACTAGCCTCGCAAGCGAGCAGATCTTTCCACAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

347

Amino Acids

38.67

Weight (kDa)

9.06

Isoelectric Point (pI)

46.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001093)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G25400 AT1G25400 AT1G68440
fragaria_vesca	FvH4_4g27210 FvH4_5g09320 FvH4_5g18320 FvH4_5g36190 FvH4_5g36660 FvH4_6g02080 FvH4_6g18410 FvH4_6g37922 FvH4_6g48101
malus_domestica	MD13G1040500.v1.1 MD16G1041500.v1.1
prunus_persica	Prupe.1G312600_v2.0.a1
pyrus_communis	pycom13g03470 pycom16g03590
rosa_chinensis	RchiOBHm_Chr2g0089781 RchiOBHm_Chr2g0161601 RchiOBHm_Chr4g0435001 RchiOBHm_Chr5g0057351 RchiOBHm_Chr6g0279821 RchiOBHm_Chr7g0227101
rosa_laevigata	RLG00000006630 RLG00000007926
rosa_multiflora	Rmu_co7981798.1_g000001 Rmu_co8240437.1_g000001 Rmu_sc0000400.1_g000034 Rmu_sc0000869.1_g000026 Rmu_sc0001246.1_g000017 Rmu_sc0002430.1_g000001 Rmu_sc0004574.1_g000051 Rmu_sc0009868.1_g000002 Rmu_sc0010765.1_g000001
rosa_roxburghii	Rroxscaffold_1G00019050 Rroxscaffold_2G00088100 Rroxscaffold_5G00376170
rosa_rugosa	Rorug02G0108200 Rorug02G0398300 Rorug02G0435100 Rorug03G0104500 Rorug03G0112000 Rorug03G0209100 Rorug04G0021800 Rorug04G0169800 Rorug04G0281500 Rorug04G0390300 Rorug05G0263200 Rorug05G0281200 Rorug06G0472700 Rorug07G0039700 Rorug07G0207300
rosa_samantha	Rh4AG337000 Rh4BG161500 Rh4BG344900 Rh4CG359600 Rh4DG339400 Rh5DG431200
rosa_wichuraiana	Rw4G029380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	507
Acc36I	ACCTGC	1 cut(s)	507
AciI	CCGC	2 cut(s)	454, 632
AclWI	GGATC	2 cut(s)	391, 782
AcoI	YGGCCR	2 cut(s)	249, 629
AcuI	CTGAAG	1 cut(s)	599
AfaI	GTAC	1 cut(s)	243
AfiI	CCNNNNNNNGG	1 cut(s)	199
AgsI	TTSAA	5 cut(s)	58, 83, 547, 846, 899
AjiI	CACGTC	1 cut(s)	959
AjnI	CCWGG	2 cut(s)	566, 734
AleI	CACNNNNGTG	1 cut(s)	517
AloI	GAACNNNNNNTCC	4 cut(s)	714, 715, 746, 747
AluBI	AGCT	5 cut(s)	115, 302, 312, 395, 920
AluI	AGCT	5 cut(s)	115, 302, 312, 395, 920
Alw21I	GWGCWC	1 cut(s)	453
Alw26I	GTCTC	2 cut(s)	28, 464
Alw44I	GTGCAC	1 cut(s)	449
AlwI	GGATC	2 cut(s)	391, 782
AoxI	GGCC	2 cut(s)	249, 629
ApaLI	GTGCAC	1 cut(s)	449
ApeKI	GCWGC	1 cut(s)	962
AsuHPI	GGTGA	1 cut(s)	814
BaeGI	GKGCMC	1 cut(s)	453
BalI	TGGCCA	1 cut(s)	251
BbsI	GAAGAC	2 cut(s)	587, 800
Bbv12I	GWGCWC	1 cut(s)	453
BbvI	GCAGC	1 cut(s)	974
BccI	CCATC	2 cut(s)	709, 976
BcgI	CGANNNNNNTGC	2 cut(s)	996, 1030
BciT130I	CCWGG	2 cut(s)	568, 736
BciVI	GTATCC	1 cut(s)	979
BcoDI	GTCTC	2 cut(s)	28, 464
BfaI	CTAG	1 cut(s)	1010
BfuAI	ACCTGC	1 cut(s)	507
BfuI	GTATCC	1 cut(s)	979
BglII	AGATCT	1 cut(s)	1028
BisI	GCNGC	2 cut(s)	632, 963
BlpI	GCTNAGC	1 cut(s)	358
BlsI	GCNGC	2 cut(s)	633, 964
Bme1390I	CCNGG	2 cut(s)	568, 736
BmgBI	CACGTC	1 cut(s)	959
BmiI	GGNNCC	1 cut(s)	491
BmrFI	CCNGG	2 cut(s)	568, 736
BmsI	GCATC	1 cut(s)	344
BpiI	GAAGAC	2 cut(s)	587, 800
BpmI	CTGGAG	1 cut(s)	88
Bpu1102I	GCTNAGC	1 cut(s)	358
BpuEI	CTTGAG	2 cut(s)	260, 711
BsaBI	GATNNNNATC	2 cut(s)	57, 786
BsaJI	CCNNGG	7 cut(s)	75, 567, 651, 677, 734, 735, 821
Bsc4I	CCNNNNNNNGG	1 cut(s)	199
Bse118I	RCCGGY	2 cut(s)	408, 912
Bse1I	ACTGG	1 cut(s)	249
Bse3DI	GCAATG	3 cut(s)	207, 252, 834
Bse8I	GATNNNNATC	2 cut(s)	57, 786
BseBI	CCWGG	2 cut(s)	568, 736
BseDI	CCNNGG	7 cut(s)	75, 567, 651, 677, 734, 735, 821
BseGI	GGATG	5 cut(s)	189, 286, 532, 701, 981
BseJI	GATNNNNATC	2 cut(s)	57, 786
BseLI	CCNNNNNNNGG	1 cut(s)	199
BseMI	GCAATG	3 cut(s)	207, 252, 834
BseMII	CTCAG	2 cut(s)	363, 864
BseNI	ACTGG	1 cut(s)	249
BseRI	GAGGAG	1 cut(s)	123
BseSI	GKGCMC	1 cut(s)	453
BseXI	GCAGC	1 cut(s)	974
BseYI	CCCAGC	1 cut(s)	312
BsgI	GTGCAG	2 cut(s)	495, 981
BshFI	GGCC	2 cut(s)	251, 631
BsiHKAI	GWGCWC	1 cut(s)	453
BsiSI	CCGG	3 cut(s)	409, 493, 913
BslFI	GGGAC	1 cut(s)	329
BslI	CCNNNNNNNGG	1 cut(s)	199
BsmAI	GTCTC	2 cut(s)	28, 464
BsmBI	CGTCTC	1 cut(s)	28
BsmFI	GGGAC	1 cut(s)	329
BsmI	GAATGC	1 cut(s)	677
BsnI	GGCC	2 cut(s)	251, 631
Bsp1286I	GDGCHC	1 cut(s)	453
Bsp143I	GATC	4 cut(s)	383, 502, 787, 1028
Bsp1720I	GCTNAGC	1 cut(s)	358
Bsp19I	CCATGG	1 cut(s)	75
BspACI	CCGC	2 cut(s)	454, 632
BspANI	GGCC	2 cut(s)	251, 631
BspCNI	CTCAG	2 cut(s)	364, 863
BspLI	GGNNCC	1 cut(s)	491
BspMI	ACCTGC	1 cut(s)	507
BspPI	GGATC	2 cut(s)	391, 782
BsrDI	GCAATG	3 cut(s)	207, 252, 834
BsrFI	RCCGGY	2 cut(s)	408, 912
BsrI	ACTGG	1 cut(s)	249
BssAI	RCCGGY	2 cut(s)	408, 912
BssECI	CCNNGG	7 cut(s)	75, 567, 651, 677, 734, 735, 821
BssMI	GATC	4 cut(s)	383, 502, 787, 1028
BssT1I	CCWWGG	3 cut(s)	75, 651, 821
Bst2UI	CCWGG	2 cut(s)	568, 736
Bst4CI	ACNGT	2 cut(s)	601, 1040
Bst6I	CTCTTC	1 cut(s)	393
BstC8I	GCNNGC	4 cut(s)	514, 930, 1020, 1024
BstDEI	CTNAG	3 cut(s)	358, 372, 850
BstDSI	CCRYGG	2 cut(s)	75, 677
BstF5I	GGATG	5 cut(s)	189, 286, 532, 701, 981
BstKTI	GATC	4 cut(s)	386, 505, 790, 1031
BstMAI	GTCTC	2 cut(s)	28, 464
BstMBI	GATC	4 cut(s)	383, 502, 787, 1028
BstMWI	GCNNNNNNNGC	7 cut(s)	209, 368, 513, 628, 938, 952, 1019
BstNI	CCWGG	2 cut(s)	568, 736
BstSCI	CCNGG	2 cut(s)	566, 734
BstSLI	GKGCMC	1 cut(s)	453
BstV1I	GCAGC	1 cut(s)	974
BstV2I	GAAGAC	2 cut(s)	587, 800
BstX2I	RGATCY	2 cut(s)	383, 1028
BstYI	RGATCY	2 cut(s)	383, 1028
BsuI	GTATCC	1 cut(s)	979
BsuRI	GGCC	2 cut(s)	251, 631
BtgI	CCRYGG	2 cut(s)	75, 677
BtrI	CACGTC	1 cut(s)	959
BtsCI	GGATG	5 cut(s)	189, 286, 532, 701, 981
BtsI	GCAGTG	1 cut(s)	507
BtsIMutI	CAGTG	2 cut(s)	507, 666
BveI	ACCTGC	1 cut(s)	507
Cac8I	GCNNGC	4 cut(s)	514, 930, 1020, 1024
Cfr10I	RCCGGY	2 cut(s)	408, 912
Csp6I	GTAC	1 cut(s)	242
CspCI	CAANNNNNGTGG	2 cut(s)	16, 51
CviAII	CATG	3 cut(s)	76, 798, 807
CviQI	GTAC	1 cut(s)	242
DdeI	CTNAG	3 cut(s)	358, 372, 850
DpnI	GATC	4 cut(s)	385, 504, 789, 1030
DpnII	GATC	4 cut(s)	383, 502, 787, 1028
EaeI	YGGCCR	2 cut(s)	249, 629
Eam1104I	CTCTTC	1 cut(s)	393
EarI	CTCTTC	1 cut(s)	393
Eco130I	CCWWGG	3 cut(s)	75, 651, 821
Eco32I	GATATC	2 cut(s)	187, 754
Eco57I	CTGAAG	1 cut(s)	599
EcoRII	CCWGG	2 cut(s)	566, 734
EcoRV	GATATC	2 cut(s)	187, 754
EcoT14I	CCWWGG	3 cut(s)	75, 651, 821
ErhI	CCWWGG	3 cut(s)	75, 651, 821
Esp3I	CGTCTC	1 cut(s)	28
FaeI	CATG	3 cut(s)	79, 801, 810
FaiI	YATR	6 cut(s)	77, 379, 628, 686, 799, 808
FaqI	GGGAC	1 cut(s)	329
FatI	CATG	3 cut(s)	75, 797, 806
Fnu4HI	GCNGC	2 cut(s)	632, 963
FokI	GGATG	5 cut(s)	176, 293, 539, 688, 988
Fsp4HI	GCNGC	2 cut(s)	632, 963
FspBI	CTAG	1 cut(s)	1010
GluI	GCNGC	2 cut(s)	632, 963
GsaI	CCCAGC	1 cut(s)	316
GsuI	CTGGAG	1 cut(s)	88
HaeIII	GGCC	2 cut(s)	251, 631
HapII	CCGG	3 cut(s)	409, 493, 913
Hin1II	CATG	3 cut(s)	79, 801, 810
HinfI	GANTC	4 cut(s)	58, 563, 647, 714
HpaII	CCGG	3 cut(s)	409, 493, 913
HphI	GGTGA	1 cut(s)	814
Hpy166II	GTNNAC	1 cut(s)	451
Hpy188I	TCNGA	6 cut(s)	340, 349, 442, 719, 792, 887
Hpy188III	TCNNGA	4 cut(s)	105, 235, 323, 899
Hpy8I	GTNNAC	1 cut(s)	451
Hpy99I	CGWCG	1 cut(s)	960
HpyAV	CCTTC	3 cut(s)	114, 987, 991
HpyCH4III	ACNGT	2 cut(s)	601, 1040
HpyCH4IV	ACGT	2 cut(s)	318, 958
HpyCH4V	TGCA	9 cut(s)	212, 296, 335, 451, 512, 605, 893, 941, 962
HpyF10VI	GCNNNNNNNGC	7 cut(s)	209, 368, 513, 628, 938, 952, 1019
HpyF3I	CTNAG	3 cut(s)	358, 372, 850
HpySE526I	ACGT	2 cut(s)	318, 958
Hsp92II	CATG	3 cut(s)	79, 801, 810
Kzo9I	GATC	4 cut(s)	383, 502, 787, 1028
LmnI	GCTCC	1 cut(s)	489
Lsp1109I	GCAGC	1 cut(s)	974
LweI	GCATC	1 cut(s)	344
MaeI	CTAG	1 cut(s)	1010
MaeII	ACGT	2 cut(s)	318, 958
MaeIII	GTNAC	5 cut(s)	173, 270, 595, 802, 854
MalI	GATC	4 cut(s)	385, 504, 789, 1030
MboI	GATC	4 cut(s)	383, 502, 787, 1028
MboII	GAAGA	7 cut(s)	273, 276, 380, 584, 592, 599, 805
MfeI	CAATTG	1 cut(s)	758
MflI	RGATCY	2 cut(s)	383, 1028
MhlI	GDGCHC	1 cut(s)	453
MlsI	TGGCCA	1 cut(s)	251
MluCI	AATT	5 cut(s)	47, 148, 758, 766, 863
MluNI	TGGCCA	1 cut(s)	251
Mox20I	TGGCCA	1 cut(s)	251
MscI	TGGCCA	1 cut(s)	251
MseI	TTAA	2 cut(s)	533, 1042
MslI	CAYNNNNRTG	3 cut(s)	478, 517, 616
Msp20I	TGGCCA	1 cut(s)	251
MspA1I	CMGCKG	1 cut(s)	456
MspI	CCGG	3 cut(s)	409, 493, 913
MspR9I	CCNGG	2 cut(s)	568, 736
MunI	CAATTG	1 cut(s)	758
Mva1269I	GAATGC	1 cut(s)	677
MvaI	CCWGG	2 cut(s)	568, 736
MwoI	GCNNNNNNNGC	7 cut(s)	209, 368, 513, 628, 938, 952, 1019
NcoI	CCATGG	1 cut(s)	75
NdeII	GATC	4 cut(s)	383, 502, 787, 1028
NlaIII	CATG	3 cut(s)	79, 801, 810
NlaIV	GGNNCC	1 cut(s)	491
NmuCI	GTSAC	3 cut(s)	173, 802, 854
OliI	CACNNNNGTG	1 cut(s)	517
PaqCI	CACCTGC	1 cut(s)	507
PasI	CCCWGGG	1 cut(s)	735
PctI	GAATGC	1 cut(s)	677
PfeI	GAWTC	4 cut(s)	58, 563, 647, 714
PkrI	GCNGC	2 cut(s)	633, 964
Psp6I	CCWGG	2 cut(s)	566, 734
PspFI	CCCAGC	1 cut(s)	312
PspGI	CCWGG	2 cut(s)	566, 734
PspN4I	GGNNCC	1 cut(s)	491
PsuI	RGATCY	2 cut(s)	383, 1028
RsaI	GTAC	1 cut(s)	243
RsaNI	GTAC	1 cut(s)	242
RseI	CAYNNNNRTG	3 cut(s)	478, 517, 616
SaqAI	TTAA	2 cut(s)	533, 1042
SatI	GCNGC	2 cut(s)	632, 963
Sau3AI	GATC	4 cut(s)	383, 502, 787, 1028
ScrFI	CCNGG	2 cut(s)	568, 736
SduI	GDGCHC	1 cut(s)	453
SfaNI	GCATC	1 cut(s)	344
SmiMI	CAYNNNNRTG	3 cut(s)	478, 517, 616
SmlI	CTYRAG	2 cut(s)	275, 726
SmoI	CTYRAG	2 cut(s)	275, 726
Sse9I	AATT	5 cut(s)	47, 148, 758, 766, 863
SsiI	CCGC	2 cut(s)	454, 632
SspI	AATATT	1 cut(s)	421
SspMI	CTAG	1 cut(s)	1010
StyD4I	CCNGG	2 cut(s)	566, 734
StyI	CCWWGG	3 cut(s)	75, 651, 821
TaaI	ACNGT	2 cut(s)	601, 1040
TaiI	ACGT	2 cut(s)	321, 961
TaqI	TCGA	1 cut(s)	391
TaqII	GACCGA	1 cut(s)	599
TasI	AATT	5 cut(s)	47, 148, 758, 766, 863
TauI	GCSGC	1 cut(s)	634
TfiI	GAWTC	4 cut(s)	58, 563, 647, 714
Tru1I	TTAA	2 cut(s)	533, 1042
Tru9I	TTAA	2 cut(s)	533, 1042
TscAI	CASTG	2 cut(s)	514, 673
TseFI	GTSAC	3 cut(s)	173, 802, 854
TseI	GCWGC	1 cut(s)	962
Tsp45I	GTSAC	3 cut(s)	173, 802, 854
TspDTI	ATGAA	1 cut(s)	453
TspGWI	ACGGA	1 cut(s)	694
TspRI	CASTG	2 cut(s)	514, 673
VneI	GTGCAC	1 cut(s)	449
XspI	CTAG	1 cut(s)	1010

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.