RchiOBHm_Chr7g0227101

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0001093
Physical Location & Seq
Reverse (-)
50440958 .. 50441257
300 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ20338

Sequence Viewer

Length: 300 bp
ATGCTGTTTGGTTATCAACGGAAAGGTGGATTTCCCTTGCACGTGGTCTGGCGGTTTATGGACACGGTGTGGAAGAGGGTGGAGTGGTTCGTCTGGCTGTTGGTGATGAGGTCGTATCGTGACACTCGGGATTGGTTATCTTTCTTTGTAGCCTGGGGTGATAGGCGTAAAAATTGGTTAGGGGTTGGACCTTTTCGGTTCATGGATGTTACTATTAGTGACGGACCCATAACTATGGATCTTGGTAGGAATATGTGTCGTGGTGTTGATACCACAACCGATTATTCCAATGCTTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

99

Amino Acids

11.88

Weight (kDa)

9.73

Isoelectric Point (pI)

16.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 52
AclWI GGATC 1 cut(s) 246
AcvI CACGTG 1 cut(s) 43
AdeI CACNNNGTG 1 cut(s) 69
AjnI CCWGG 1 cut(s) 152
AlwI GGATC 1 cut(s) 246
Ama87I CYCGRG 1 cut(s) 126
AspS9I GGNCC 2 cut(s) 188, 224
AsuHPI GGTGA 2 cut(s) 115, 170
AvaI CYCGRG 1 cut(s) 126
AvaII GGWCC 2 cut(s) 188, 224
BbrPI CACGTG 1 cut(s) 43
BciT130I CCWGG 1 cut(s) 154
Bme1390I CCNGG 1 cut(s) 154
Bme18I GGWCC 2 cut(s) 188, 224
BmeT110I CYCGRG 1 cut(s) 126
BmgT120I GGNCC 2 cut(s) 188, 224
BmiI GGNNCC 1 cut(s) 226
BmrFI CCNGG 1 cut(s) 154
BsaAI YACGTR 1 cut(s) 43
BsaJI CCNNGG 1 cut(s) 153
BseBI CCWGG 1 cut(s) 154
BseDI CCNNGG 1 cut(s) 153
BseGI GGATG 1 cut(s) 211
BsiHKCI CYCGRG 1 cut(s) 126
BsoBI CYCGRG 1 cut(s) 126
Bsp143I GATC 1 cut(s) 238
BspACI CCGC 1 cut(s) 52
BspLI GGNNCC 1 cut(s) 226
BspPI GGATC 1 cut(s) 246
BssECI CCNNGG 1 cut(s) 153
BssMI GATC 1 cut(s) 238
Bst2UI CCWGG 1 cut(s) 154
Bst4CI ACNGT 1 cut(s) 67
Bst6I CTCTTC 1 cut(s) 68
BstBAI YACGTR 1 cut(s) 43
BstF5I GGATG 1 cut(s) 211
BstKTI GATC 1 cut(s) 241
BstMBI GATC 1 cut(s) 238
BstNI CCWGG 1 cut(s) 154
BstSCI CCNGG 1 cut(s) 152
BstX2I RGATCY 1 cut(s) 238
BstXI CCANNNNNNTGG 1 cut(s) 235
BstYI RGATCY 1 cut(s) 238
BtsCI GGATG 1 cut(s) 211
Cfr13I GGNCC 2 cut(s) 188, 224
CviAII CATG 1 cut(s) 202
CviJI RGCY 2 cut(s) 97, 152
CviKI_1 RGCY 2 cut(s) 97, 152
DpnI GATC 1 cut(s) 240
DpnII GATC 1 cut(s) 238
DraIII CACNNNGTG 1 cut(s) 69
Eam1104I CTCTTC 1 cut(s) 68
EarI CTCTTC 1 cut(s) 68
Eco47I GGWCC 2 cut(s) 188, 224
Eco72I CACGTG 1 cut(s) 43
Eco88I CYCGRG 1 cut(s) 126
EcoRII CCWGG 1 cut(s) 152
FaeI CATG 1 cut(s) 205
FaiI YATR 5 cut(s) 59, 203, 230, 236, 254
FatI CATG 1 cut(s) 201
FokI GGATG 1 cut(s) 218
Hin1II CATG 1 cut(s) 205
HphI GGTGA 2 cut(s) 115, 170
Hpy188III TCNNGA 2 cut(s) 119, 128
HpyCH4III ACNGT 1 cut(s) 67
HpyCH4IV ACGT 1 cut(s) 42
HpyCH4V TGCA 1 cut(s) 40
HpySE526I ACGT 1 cut(s) 42
Hsp92II CATG 1 cut(s) 205
Kzo9I GATC 1 cut(s) 238
LpnPI CCDG 4 cut(s) 34, 79, 139, 166
MaeII ACGT 1 cut(s) 42
MaeIII GTNAC 3 cut(s) 119, 208, 218
MalI GATC 1 cut(s) 240
MboI GATC 1 cut(s) 238
MboII GAAGA 1 cut(s) 85
MflI RGATCY 1 cut(s) 238
MluCI AATT 1 cut(s) 172
MmeI TCCRAC 1 cut(s) 166
MnlI CCTC 2 cut(s) 69, 102
MslI CAYNNNNRTG 1 cut(s) 233
MspR9I CCNGG 1 cut(s) 154
MvaI CCWGG 1 cut(s) 154
NdeII GATC 1 cut(s) 238
NlaIII CATG 1 cut(s) 205
NlaIV GGNNCC 1 cut(s) 226
NmuCI GTSAC 2 cut(s) 119, 218
PmaCI CACGTG 1 cut(s) 43
PmlI CACGTG 1 cut(s) 43
Ppu21I YACGTR 1 cut(s) 43
Psp6I CCWGG 1 cut(s) 152
PspCI CACGTG 1 cut(s) 43
PspGI CCWGG 1 cut(s) 152
PspN4I GGNNCC 1 cut(s) 226
PspPI GGNCC 2 cut(s) 188, 224
PsuI RGATCY 1 cut(s) 238
RseI CAYNNNNRTG 1 cut(s) 233
Sau3AI GATC 1 cut(s) 238
Sau96I GGNCC 2 cut(s) 188, 224
ScrFI CCNGG 1 cut(s) 154
SetI ASST 4 cut(s) 28, 45, 113, 193
SinI GGWCC 2 cut(s) 188, 224
SmiMI CAYNNNNRTG 1 cut(s) 233
Sse9I AATT 1 cut(s) 172
SsiI CCGC 1 cut(s) 52
StyD4I CCNGG 1 cut(s) 152
TaaI ACNGT 1 cut(s) 67
TaiI ACGT 1 cut(s) 45
TasI AATT 1 cut(s) 172
TseFI GTSAC 2 cut(s) 119, 218
Tsp45I GTSAC 2 cut(s) 119, 218
TspDTI ATGAA 1 cut(s) 190
TspGWI ACGGA 2 cut(s) 34, 237
VpaK11BI GGWCC 2 cut(s) 188, 224
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.