RLG00000007926

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0001093
Physical Location & Seq
Forward (+)
23013463 .. 23014056
594 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000007926

Sequence Viewer

Length: 339 bp
ATGGCGCTGGTTTCTTCTCTGAGTAAGGTCTCTAGGCAATATTTACAGTGGTGGGTATGGCCTCTTAAGATGATGAACATAGATGGGTGGAATTTTTTTGCTCTGAGGTGGCATGAGACGGTGGTTCCCTTACTGGTTCTTAATGGTTTGTGGGGATCTAGTATTACACCGGGATCCGGCCAACAACAGTCGGGTGAGTCGGTGTGGTTTGCTGCTTGGTTTGGGTTTCTTCGCCAAGGCGAGCTCGAAGGGATAGTTTTACAGTGGTGGTCTGCTGACGGGGCACCTCAGGAGAAAGAAGAGGGTGACGACTCCTTTTTATTTTTTTTGTATTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

113

Amino Acids

12.97

Weight (kDa)

4.57

Isoelectric Point (pI)

56.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 283
AclWI GGATC 3 cut(s) 163, 168, 181
AcoI YGGCCR 1 cut(s) 178
AcsI RAATTY 1 cut(s) 91
AfiI CCNNNNNNNGG 1 cut(s) 176
AflII CTTAAG 1 cut(s) 65
AluBI AGCT 1 cut(s) 244
AluI AGCT 1 cut(s) 244
Alw21I GWGCWC 1 cut(s) 246
Alw26I GTCTC 2 cut(s) 34, 110
AlwI GGATC 3 cut(s) 163, 168, 181
AoxI GGCC 2 cut(s) 59, 178
ApeKI GCWGC 1 cut(s) 212
ApoI RAATTY 1 cut(s) 91
AspLEI GCGC 1 cut(s) 7
AsuC2I CCSGG 1 cut(s) 171
AsuHPI GGTGA 2 cut(s) 206, 317
AxyI CCTNAGG 1 cut(s) 288
BaeGI GKGCMC 1 cut(s) 286
BamHI GGATCC 1 cut(s) 173
BanI GGYRCC 1 cut(s) 283
BanII GRGCYC 1 cut(s) 246
Bbv12I GWGCWC 1 cut(s) 246
BbvI GCAGC 1 cut(s) 199
BccI CCATC 1 cut(s) 77
BcnI CCSGG 1 cut(s) 171
BcoDI GTCTC 2 cut(s) 34, 110
BfaI CTAG 2 cut(s) 33, 159
BfoI RGCGCY 1 cut(s) 8
BfrI CTTAAG 1 cut(s) 65
BisI GCNGC 1 cut(s) 213
BlsI GCNGC 1 cut(s) 214
Bme1390I CCNGG 1 cut(s) 171
BmiI GGNNCC 3 cut(s) 126, 175, 285
BmrFI CCNGG 1 cut(s) 171
BpuMI CCSGG 1 cut(s) 171
BsaI GGTCTC 1 cut(s) 34
BsaJI CCNNGG 1 cut(s) 235
Bsc4I CCNNNNNNNGG 1 cut(s) 176
Bse1I ACTGG 1 cut(s) 138
Bse21I CCTNAGG 1 cut(s) 288
BseDI CCNNGG 1 cut(s) 235
BseLI CCNNNNNNNGG 1 cut(s) 176
BseMII CTCAG 3 cut(s) 11, 95, 302
BseNI ACTGG 1 cut(s) 138
BseSI GKGCMC 1 cut(s) 286
BseXI GCAGC 1 cut(s) 199
BshFI GGCC 2 cut(s) 61, 180
BshNI GGYRCC 1 cut(s) 283
BsiHKAI GWGCWC 1 cut(s) 246
BsiSI CCGG 2 cut(s) 170, 177
BslI CCNNNNNNNGG 1 cut(s) 176
BsmAI GTCTC 2 cut(s) 34, 110
BsmBI CGTCTC 1 cut(s) 110
BsnI GGCC 2 cut(s) 61, 180
Bso31I GGTCTC 1 cut(s) 34
Bsp1286I GDGCHC 2 cut(s) 246, 286
Bsp143I GATC 2 cut(s) 155, 173
BspANI GGCC 2 cut(s) 61, 180
BspCNI CTCAG 3 cut(s) 12, 96, 301
BspLI GGNNCC 3 cut(s) 126, 175, 285
BspPI GGATC 3 cut(s) 163, 168, 181
BspT107I GGYRCC 1 cut(s) 283
BspTI CTTAAG 1 cut(s) 65
BspTNI GGTCTC 1 cut(s) 34
BsrI ACTGG 1 cut(s) 138
BssECI CCNNGG 1 cut(s) 235
BssMI GATC 2 cut(s) 155, 173
BssT1I CCWWGG 1 cut(s) 235
Bst4CI ACNGT 4 cut(s) 48, 121, 189, 264
Bst6I CTCTTC 1 cut(s) 294
BstAFI CTTAAG 1 cut(s) 65
BstC8I GCNNGC 1 cut(s) 242
BstDEI CTNAG 3 cut(s) 20, 104, 288
BstH2I RGCGCY 1 cut(s) 8
BstHHI GCGC 1 cut(s) 7
BstKTI GATC 2 cut(s) 158, 176
BstMAI GTCTC 2 cut(s) 34, 110
BstMBI GATC 2 cut(s) 155, 173
BstMWI GCNNNNNNNGC 1 cut(s) 281
BstSCI CCNGG 1 cut(s) 169
BstSLI GKGCMC 1 cut(s) 286
BstV1I GCAGC 1 cut(s) 199
BstX2I RGATCY 2 cut(s) 155, 173
BstYI RGATCY 2 cut(s) 155, 173
Bsu36I CCTNAGG 1 cut(s) 288
BsuRI GGCC 2 cut(s) 61, 180
BtsIMutI CAGTG 2 cut(s) 53, 269
Cac8I GCNNGC 1 cut(s) 242
CfoI GCGC 1 cut(s) 7
CviAII CATG 1 cut(s) 113
CviJI RGCY 3 cut(s) 61, 180, 244
CviKI_1 RGCY 3 cut(s) 61, 180, 244
DdeI CTNAG 3 cut(s) 20, 104, 288
DpnI GATC 2 cut(s) 157, 175
DpnII GATC 2 cut(s) 155, 173
EaeI YGGCCR 1 cut(s) 178
Eam1104I CTCTTC 1 cut(s) 294
EarI CTCTTC 1 cut(s) 294
Ecl136II GAGCTC 1 cut(s) 244
Eco130I CCWWGG 1 cut(s) 235
Eco24I GRGCYC 1 cut(s) 246
Eco31I GGTCTC 1 cut(s) 34
Eco53kI GAGCTC 1 cut(s) 244
Eco81I CCTNAGG 1 cut(s) 288
EcoICRI GAGCTC 1 cut(s) 244
EcoT14I CCWWGG 1 cut(s) 235
EcoT38I GRGCYC 1 cut(s) 246
ErhI CCWWGG 1 cut(s) 235
Esp3I CGTCTC 1 cut(s) 110
FaeI CATG 1 cut(s) 116
FaiI YATR 3 cut(s) 58, 80, 114
FatI CATG 1 cut(s) 112
Fnu4HI GCNGC 1 cut(s) 213
FriOI GRGCYC 1 cut(s) 246
Fsp4HI GCNGC 1 cut(s) 213
FspBI CTAG 2 cut(s) 33, 159
GlaI GCGC 1 cut(s) 6
GluI GCNGC 1 cut(s) 213
HaeII RGCGCY 1 cut(s) 8
HaeIII GGCC 2 cut(s) 61, 180
HapII CCGG 2 cut(s) 170, 177
HhaI GCGC 1 cut(s) 7
Hin1II CATG 1 cut(s) 116
Hin6I GCGC 1 cut(s) 5
HinP1I GCGC 1 cut(s) 5
HinfI GANTC 2 cut(s) 197, 311
HpaII CCGG 2 cut(s) 170, 177
HphI GGTGA 2 cut(s) 206, 317
Hpy188I TCNGA 2 cut(s) 21, 105
Hpy188III TCNNGA 1 cut(s) 290
HpyAV CCTTC 1 cut(s) 242
HpyCH4III ACNGT 4 cut(s) 48, 121, 189, 264
HpyF10VI GCNNNNNNNGC 1 cut(s) 281
HpyF3I CTNAG 3 cut(s) 20, 104, 288
Hsp92II CATG 1 cut(s) 116
HspAI GCGC 1 cut(s) 5
Kzo9I GATC 2 cut(s) 155, 173
LpnPI CCDG 4 cut(s) 119, 183, 190, 275
Lsp1109I GCAGC 1 cut(s) 199
MaeI CTAG 2 cut(s) 33, 159
MaeIII GTNAC 1 cut(s) 305
MalI GATC 2 cut(s) 157, 175
MboI GATC 2 cut(s) 155, 173
MboII GAAGA 3 cut(s) 6, 221, 311
MflI RGATCY 2 cut(s) 155, 173
MhlI GDGCHC 2 cut(s) 246, 286
MluCI AATT 1 cut(s) 91
MlyI GAGTC 2 cut(s) 206, 305
MnlI CCTC 4 cut(s) 72, 99, 295, 297
MseI TTAA 2 cut(s) 66, 141
MspCI CTTAAG 1 cut(s) 65
MspI CCGG 2 cut(s) 170, 177
MspR9I CCNGG 1 cut(s) 171
MwoI GCNNNNNNNGC 1 cut(s) 281
NciI CCSGG 1 cut(s) 171
NdeII GATC 2 cut(s) 155, 173
NlaIII CATG 1 cut(s) 116
NlaIV GGNNCC 3 cut(s) 126, 175, 285
NmuCI GTSAC 1 cut(s) 305
PkrI GCNGC 1 cut(s) 214
PleI GAGTC 2 cut(s) 205, 305
PpsI GAGTC 2 cut(s) 205, 305
Psp124BI GAGCTC 1 cut(s) 246
PspN4I GGNNCC 3 cut(s) 126, 175, 285
PsuI RGATCY 2 cut(s) 155, 173
SacI GAGCTC 1 cut(s) 246
SaqAI TTAA 2 cut(s) 66, 141
SatI GCNGC 1 cut(s) 213
Sau3AI GATC 2 cut(s) 155, 173
SchI GAGTC 2 cut(s) 206, 305
ScrFI CCNGG 1 cut(s) 171
SduI GDGCHC 2 cut(s) 246, 286
SetI ASST 4 cut(s) 30, 110, 246, 289
SmlI CTYRAG 1 cut(s) 65
SmoI CTYRAG 1 cut(s) 65
Sse9I AATT 1 cut(s) 91
SspI AATATT 1 cut(s) 41
SspMI CTAG 2 cut(s) 33, 159
SstI GAGCTC 1 cut(s) 246
StyD4I CCNGG 1 cut(s) 169
StyI CCWWGG 1 cut(s) 235
TaaI ACNGT 4 cut(s) 48, 121, 189, 264
TaqI TCGA 1 cut(s) 246
TasI AATT 1 cut(s) 91
Tru1I TTAA 2 cut(s) 66, 141
Tru9I TTAA 2 cut(s) 66, 141
TscAI CASTG 2 cut(s) 53, 269
TseFI GTSAC 1 cut(s) 305
TseI GCWGC 1 cut(s) 212
Tsp45I GTSAC 1 cut(s) 305
TspDTI ATGAA 1 cut(s) 89
TspRI CASTG 2 cut(s) 53, 269
Vha464I CTTAAG 1 cut(s) 65
XapI RAATTY 1 cut(s) 91
XspI CTAG 2 cut(s) 33, 159
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.