Rorug07G0039700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0001093
Physical Location & Seq
Forward (+)
2807270 .. 2810446
3177 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0039700.1

Sequence Viewer

Length: 297 bp
ATGAAGAAACAGCAAGTGGTAGTCAGAAGAGATGGGTCGTCCCGGAGGAGCTCAAGCAGTACTTCATCTTCAATGGTTAGAACTGTGAGGTATGGGGAGTGCCAGAAGAATCACGCTGCAAATATCGGAGGGTATGCGGTAGATGGATGCAGAGAATTCATGGCAAGTGGGCAGGAGGGCACGGCGGAGGCGCTGACTTGTGCTGCCTGCGGCTGCCACCGGAATTTTCACCGGAGGGAAGTGGAAACTGAGGTTGTTTGTGAGTATACTCCACCCAATAATTCTTATCAACAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

98

Amino Acids

10.84

Weight (kDa)

8.61

Isoelectric Point (pI)

71.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ZF-HD_dimer PF04770 29 - 81 1.9e-31 ZF-HD protein dimerisation region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 266
AciI CCGC 3 cut(s) 137, 185, 210
AcsI RAATTY 2 cut(s) 155, 223
AfaI GTAC 1 cut(s) 61
AgsI TTSAA 1 cut(s) 72
AluBI AGCT 1 cut(s) 51
AluI AGCT 1 cut(s) 51
Alw21I GWGCWC 1 cut(s) 53
ApeKI GCWGC 3 cut(s) 116, 203, 213
ApoI RAATTY 2 cut(s) 155, 223
AspLEI GCGC 1 cut(s) 193
AsuC2I CCSGG 1 cut(s) 43
AsuHPI GGTGA 1 cut(s) 221
BaeGI GKGCMC 1 cut(s) 182
BanII GRGCYC 1 cut(s) 53
BarI GAAGNNNNNNTAC 2 cut(s) 52, 84
Bbv12I GWGCWC 1 cut(s) 53
BbvI GCAGC 3 cut(s) 103, 190, 200
BccI CCATC 2 cut(s) 26, 137
BceAI ACGGC 1 cut(s) 198
BcnI CCSGG 1 cut(s) 43
BfoI RGCGCY 1 cut(s) 194
BisI GCNGC 4 cut(s) 117, 204, 211, 214
BlsI GCNGC 4 cut(s) 118, 205, 212, 215
BmcAI AGTACT 1 cut(s) 61
Bme1390I CCNGG 1 cut(s) 43
BmrFI CCNGG 1 cut(s) 43
BmsI GCATC 1 cut(s) 137
BpuEI CTTGAG 1 cut(s) 37
BpuMI CCSGG 1 cut(s) 43
BsaWI WCCGGW 2 cut(s) 219, 231
BseGI GGATG 1 cut(s) 152
BseMII CTCAG 1 cut(s) 240
BseRI GAGGAG 1 cut(s) 61
BseSI GKGCMC 1 cut(s) 182
BseXI GCAGC 3 cut(s) 103, 190, 200
BsiHKAI GWGCWC 1 cut(s) 53
BsiSI CCGG 3 cut(s) 43, 220, 232
BslFI GGGAC 1 cut(s) 25
BsmFI GGGAC 1 cut(s) 25
Bsp1286I GDGCHC 2 cut(s) 53, 182
BspACI CCGC 3 cut(s) 137, 185, 210
BspCNI CTCAG 1 cut(s) 241
BssNAI GTATAC 1 cut(s) 267
Bst1107I GTATAC 1 cut(s) 267
Bst4CI ACNGT 1 cut(s) 85
Bst6I CTCTTC 1 cut(s) 22
BstC8I GCNNGC 1 cut(s) 208
BstDEI CTNAG 1 cut(s) 249
BstF5I GGATG 1 cut(s) 152
BstH2I RGCGCY 1 cut(s) 194
BstHHI GCGC 1 cut(s) 193
BstSCI CCNGG 1 cut(s) 41
BstSLI GKGCMC 1 cut(s) 182
BstV1I GCAGC 3 cut(s) 103, 190, 200
BstZ17I GTATAC 1 cut(s) 267
BtsCI GGATG 1 cut(s) 152
Cac8I GCNNGC 1 cut(s) 208
CfoI GCGC 1 cut(s) 193
Csp6I GTAC 1 cut(s) 60
CviAII CATG 1 cut(s) 160
CviJI RGCY 2 cut(s) 51, 213
CviKI_1 RGCY 2 cut(s) 51, 213
CviQI GTAC 1 cut(s) 60
DdeI CTNAG 1 cut(s) 249
Eam1104I CTCTTC 1 cut(s) 22
EarI CTCTTC 1 cut(s) 22
EciI GGCGGA 1 cut(s) 200
Ecl136II GAGCTC 1 cut(s) 51
Eco24I GRGCYC 1 cut(s) 53
Eco53kI GAGCTC 1 cut(s) 51
EcoICRI GAGCTC 1 cut(s) 51
EcoRI GAATTC 1 cut(s) 155
EcoT38I GRGCYC 1 cut(s) 53
FaeI CATG 1 cut(s) 163
FaiI YATR 4 cut(s) 93, 135, 161, 267
FalI AAGNNNNNCTT 2 cut(s) 46, 78
FaqI GGGAC 1 cut(s) 25
FatI CATG 1 cut(s) 159
FblI GTMKAC 1 cut(s) 266
Fnu4HI GCNGC 4 cut(s) 117, 204, 211, 214
FokI GGATG 1 cut(s) 159
FriOI GRGCYC 1 cut(s) 53
Fsp4HI GCNGC 4 cut(s) 117, 204, 211, 214
GlaI GCGC 1 cut(s) 192
GluI GCNGC 4 cut(s) 117, 204, 211, 214
HaeII RGCGCY 1 cut(s) 194
HapII CCGG 3 cut(s) 43, 220, 232
HhaI GCGC 1 cut(s) 193
Hin1II CATG 1 cut(s) 163
Hin6I GCGC 1 cut(s) 191
HinP1I GCGC 1 cut(s) 191
HinfI GANTC 1 cut(s) 109
HpaII CCGG 3 cut(s) 43, 220, 232
HphI GGTGA 1 cut(s) 221
Hpy166II GTNNAC 1 cut(s) 267
Hpy188I TCNGA 2 cut(s) 26, 128
Hpy8I GTNNAC 1 cut(s) 267
HpyCH4III ACNGT 1 cut(s) 85
HpyCH4V TGCA 2 cut(s) 119, 150
HpyF3I CTNAG 1 cut(s) 249
Hsp92II CATG 1 cut(s) 163
HspAI GCGC 1 cut(s) 191
LmnI GCTCC 1 cut(s) 48
LpnPI CCDG 6 cut(s) 56, 116, 158, 220, 233, 245
Lsp1109I GCAGC 3 cut(s) 103, 190, 200
LweI GCATC 1 cut(s) 137
MboII GAAGA 4 cut(s) 16, 39, 60, 118
MhlI GDGCHC 2 cut(s) 53, 182
MluCI AATT 3 cut(s) 155, 223, 280
MnlI CCTC 7 cut(s) 39, 81, 122, 169, 181, 228, 244
MspI CCGG 3 cut(s) 43, 220, 232
MspR9I CCNGG 1 cut(s) 43
NciI CCSGG 1 cut(s) 43
NlaIII CATG 1 cut(s) 163
PfeI GAWTC 1 cut(s) 109
PfoI TCCNGGA 1 cut(s) 41
PkrI GCNGC 4 cut(s) 118, 205, 212, 215
Psp124BI GAGCTC 1 cut(s) 53
RsaI GTAC 1 cut(s) 61
RsaNI GTAC 1 cut(s) 60
SacI GAGCTC 1 cut(s) 53
SatI GCNGC 4 cut(s) 117, 204, 211, 214
ScaI AGTACT 1 cut(s) 61
ScrFI CCNGG 1 cut(s) 43
SduI GDGCHC 2 cut(s) 53, 182
SetI ASST 3 cut(s) 53, 92, 255
SfaNI GCATC 1 cut(s) 137
SmlI CTYRAG 1 cut(s) 52
SmoI CTYRAG 1 cut(s) 52
Sse9I AATT 3 cut(s) 155, 223, 280
SsiI CCGC 3 cut(s) 137, 185, 210
SstI GAGCTC 1 cut(s) 53
StyD4I CCNGG 1 cut(s) 41
TaaI ACNGT 1 cut(s) 85
TasI AATT 3 cut(s) 155, 223, 280
TatI WGTACW 1 cut(s) 59
TauI GCSGC 1 cut(s) 213
TfiI GAWTC 1 cut(s) 109
TseI GCWGC 3 cut(s) 116, 203, 213
TspDTI ATGAA 3 cut(s) 17, 54, 148
XapI RAATTY 2 cut(s) 155, 223
XmiI GTMKAC 1 cut(s) 266
ZrmI AGTACT 1 cut(s) 61
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.