Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0001093

Physical Location & Seq

Genomic Coordinates Reverse (-)

5375615 .. 5376511

Gene Structure 897 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g09320.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGGATGGAGAGAGGAAGTTTGCAGGTGGTTGGTGGTCTGATACCTGTTGGCTGGTATGGATGGTAGAGCGGGCTAGAGAGGCGGCGATTTCAAATTGGCTGATGGATCATCGATGTGGAGTGGTAGCGCATGGCTGGAGGTGGACCGAAGATGGGCAGGTCGAGACGGAGCCATTTTGCTTGGGTTGGTTTGACCAAATCTGGGTTCGGTTGCACAGTTTCGATTTGTGGAAGGACTGCGTTGGAGGTTGCGTTGCCTTTCTATGGCGAGAAGCGAAGGTTGGAAGGTTGCCGGCGATAGCTCGACCAAGGCGGCGGAGCAAGACTGCTAGTGCTCTGATGAGGTGGGCCAACGAAGTGCTGGCTGGTTGTCAACATGTGGGTGGATTACCTTTGCACGTGGTCTGGTGGTCTTTAGACACGGTGTTGAAGAAGGATAATTGGCTCTGTTTATTGTTGGTGACAAGGTTGTATCGTGACTCTCAGGCTTTAGTAGCTCATGTTGAGCGTCAAATTTGGTTAGGGGTTGGGCCCTTTCGGCTCATGGATGTTGCTTTTAGTGACGGACCCGTAACTATGGATCTTGTTAGGAATGTGTGTTGTGGTGTAGGCATCATAACCGATCGTTCCATTGTGCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

214

Amino Acids

24.45

Weight (kDa)

8.11

Isoelectric Point (pI)

37.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001093)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G25400 AT1G25400 AT1G68440
fragaria_vesca	FvH4_4g27210 FvH4_5g09320 FvH4_5g18320 FvH4_5g36190 FvH4_5g36660 FvH4_6g02080 FvH4_6g18410 FvH4_6g37922 FvH4_6g48101
malus_domestica	MD13G1040500.v1.1 MD16G1041500.v1.1
prunus_persica	Prupe.1G312600_v2.0.a1
pyrus_communis	pycom13g03470 pycom16g03590
rosa_chinensis	RchiOBHm_Chr2g0089781 RchiOBHm_Chr2g0161601 RchiOBHm_Chr4g0435001 RchiOBHm_Chr5g0057351 RchiOBHm_Chr6g0279821 RchiOBHm_Chr7g0227101
rosa_laevigata	RLG00000006630 RLG00000007926
rosa_multiflora	Rmu_co7981798.1_g000001 Rmu_co8240437.1_g000001 Rmu_sc0000400.1_g000034 Rmu_sc0000869.1_g000026 Rmu_sc0001246.1_g000017 Rmu_sc0002430.1_g000001 Rmu_sc0004574.1_g000051 Rmu_sc0009868.1_g000002 Rmu_sc0010765.1_g000001
rosa_roxburghii	Rroxscaffold_1G00019050 Rroxscaffold_2G00088100 Rroxscaffold_5G00376170
rosa_rugosa	Rorug02G0108200 Rorug02G0398300 Rorug02G0435100 Rorug03G0104500 Rorug03G0112000 Rorug03G0209100 Rorug04G0021800 Rorug04G0169800 Rorug04G0281500 Rorug04G0390300 Rorug05G0263200 Rorug05G0281200 Rorug06G0472700 Rorug07G0039700 Rorug07G0207300
rosa_samantha	Rh4AG337000 Rh4BG161500 Rh4BG344900 Rh4CG359600 Rh4DG339400 Rh5DG431200
rosa_wichuraiana	Rw4G029380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	14
Acc36I	ACCTGC	2 cut(s)	14, 148
AccBSI	CCGCTC	1 cut(s)	70
AciI	CCGC	4 cut(s)	70, 83, 313, 316
AclWI	GGATC	2 cut(s)	114, 588
AcsI	RAATTY	1 cut(s)	513
AcvI	CACGTG	1 cut(s)	400
AfiI	CCNNNNNNNGG	3 cut(s)	153, 202, 264
AflIII	ACRYGT	1 cut(s)	376
AgsI	TTSAA	2 cut(s)	93, 430
AjuI	GAANNNNNNNTTGG	4 cut(s)	189, 221, 264, 296
AluBI	AGCT	2 cut(s)	302, 497
AluI	AGCT	2 cut(s)	302, 497
Alw21I	GWGCWC	1 cut(s)	337
Alw26I	GTCTC	1 cut(s)	158
AlwI	GGATC	2 cut(s)	114, 588
AoxI	GGCC	2 cut(s)	348, 530
ApaI	GGGCCC	1 cut(s)	534
ApoI	RAATTY	1 cut(s)	513
AspLEI	GCGC	1 cut(s)	130
AspS9I	GGNCC	5 cut(s)	144, 348, 530, 531, 566
AsuHPI	GGTGA	1 cut(s)	472
AvaII	GGWCC	2 cut(s)	144, 566
BaeGI	GKGCMC	1 cut(s)	534
BanII	GRGCYC	1 cut(s)	534
BbrPI	CACGTG	1 cut(s)	400
Bbv12I	GWGCWC	1 cut(s)	337
BccI	CCATC	3 cut(s)	55, 97, 146
BcoDI	GTCTC	1 cut(s)	158
BfaI	CTAG	2 cut(s)	75, 330
BfuAI	ACCTGC	2 cut(s)	14, 148
BglI	GCCNNNNNGGC	1 cut(s)	538
BisI	GCNGC	2 cut(s)	84, 314
BlsI	GCNGC	2 cut(s)	85, 315
Bme18I	GGWCC	2 cut(s)	144, 566
BmgT120I	GGNCC	5 cut(s)	144, 348, 530, 531, 566
BmiI	GGNNCC	3 cut(s)	171, 532, 568
BmsI	GCATC	1 cut(s)	621
BpmI	CTGGAG	1 cut(s)	157
Bsa29I	ATCGAT	1 cut(s)	112
BsaAI	YACGTR	1 cut(s)	400
BsaJI	CCNNGG	1 cut(s)	308
BsaXI	ACNNNNNCTCC	2 cut(s)	237, 267
Bsc4I	CCNNNNNNNGG	3 cut(s)	153, 202, 264
Bse118I	RCCGGY	1 cut(s)	292
BseCI	ATCGAT	1 cut(s)	112
BseDI	CCNNGG	1 cut(s)	308
BseGI	GGATG	3 cut(s)	10, 66, 553
BseLI	CCNNNNNNNGG	3 cut(s)	153, 202, 264
BseMII	CTCAG	1 cut(s)	497
BseSI	GKGCMC	1 cut(s)	534
Bsh1285I	CGRYCG	1 cut(s)	625
BshFI	GGCC	2 cut(s)	350, 532
BshVI	ATCGAT	1 cut(s)	112
BsiEI	CGRYCG	1 cut(s)	625
BsiHKAI	GWGCWC	1 cut(s)	337
BsiSI	CCGG	1 cut(s)	293
BslI	CCNNNNNNNGG	3 cut(s)	153, 202, 264
BsmAI	GTCTC	1 cut(s)	158
BsmBI	CGTCTC	1 cut(s)	158
BsnI	GGCC	2 cut(s)	350, 532
Bsp120I	GGGCCC	1 cut(s)	530
Bsp1286I	GDGCHC	2 cut(s)	337, 534
Bsp143I	GATC	3 cut(s)	106, 580, 622
BspACI	CCGC	4 cut(s)	70, 83, 313, 316
BspANI	GGCC	2 cut(s)	350, 532
BspCNI	CTCAG	1 cut(s)	496
BspDI	ATCGAT	1 cut(s)	112
BspLI	GGNNCC	3 cut(s)	171, 532, 568
BspMI	ACCTGC	2 cut(s)	14, 148
BspPI	GGATC	2 cut(s)	114, 588
BsrBI	CCGCTC	1 cut(s)	70
BsrFI	RCCGGY	1 cut(s)	292
BssAI	RCCGGY	1 cut(s)	292
BssECI	CCNNGG	1 cut(s)	308
BssMI	GATC	3 cut(s)	106, 580, 622
BssT1I	CCWWGG	1 cut(s)	308
Bst4CI	ACNGT	2 cut(s)	218, 424
BstBAI	YACGTR	1 cut(s)	400
BstC8I	GCNNGC	3 cut(s)	72, 294, 363
BstDEI	CTNAG	1 cut(s)	483
BstF5I	GGATG	3 cut(s)	10, 66, 553
BstHHI	GCGC	1 cut(s)	130
BstKTI	GATC	3 cut(s)	109, 583, 625
BstMAI	GTCTC	1 cut(s)	158
BstMBI	GATC	3 cut(s)	106, 580, 622
BstMCI	CGRYCG	1 cut(s)	625
BstMWI	GCNNNNNNNGC	3 cut(s)	80, 494, 538
BstNSI	RCATGY	1 cut(s)	380
BstSLI	GKGCMC	1 cut(s)	534
BstX2I	RGATCY	1 cut(s)	580
BstYI	RGATCY	1 cut(s)	580
Bsu15I	ATCGAT	1 cut(s)	112
BsuRI	GGCC	2 cut(s)	350, 532
BsuTUI	ATCGAT	1 cut(s)	112
BtsCI	GGATG	3 cut(s)	10, 66, 553
BveI	ACCTGC	2 cut(s)	14, 148
Cac8I	GCNNGC	3 cut(s)	72, 294, 363
CfoI	GCGC	1 cut(s)	130
Cfr10I	RCCGGY	1 cut(s)	292
Cfr13I	GGNCC	5 cut(s)	144, 348, 530, 531, 566
ClaI	ATCGAT	1 cut(s)	112
CseI	GACGC	1 cut(s)	497
CviAII	CATG	4 cut(s)	131, 377, 500, 544
DdeI	CTNAG	1 cut(s)	483
DpnI	GATC	3 cut(s)	108, 582, 624
DpnII	GATC	3 cut(s)	106, 580, 622
EciI	GGCGGA	1 cut(s)	331
Eco130I	CCWWGG	1 cut(s)	308
Eco24I	GRGCYC	1 cut(s)	534
Eco47I	GGWCC	2 cut(s)	144, 566
Eco72I	CACGTG	1 cut(s)	400
EcoO109I	RGGNCCY	1 cut(s)	531
EcoT14I	CCWWGG	1 cut(s)	308
EcoT38I	GRGCYC	1 cut(s)	534
ErhI	CCWWGG	1 cut(s)	308
Esp3I	CGTCTC	1 cut(s)	158
FaeI	CATG	4 cut(s)	134, 380, 503, 547
FaiI	YATR	8 cut(s)	58, 132, 265, 378, 501, 545, 578, 617
FatI	CATG	4 cut(s)	130, 376, 499, 543
FauI	CCCGC	1 cut(s)	63
Fnu4HI	GCNGC	2 cut(s)	84, 314
FokI	GGATG	3 cut(s)	17, 73, 560
FriOI	GRGCYC	1 cut(s)	534
Fsp4HI	GCNGC	2 cut(s)	84, 314
FspBI	CTAG	2 cut(s)	75, 330
GlaI	GCGC	1 cut(s)	129
GluI	GCNGC	2 cut(s)	84, 314
GsuI	CTGGAG	1 cut(s)	157
HaeIII	GGCC	2 cut(s)	350, 532
HapII	CCGG	1 cut(s)	293
HgaI	GACGC	1 cut(s)	497
HhaI	GCGC	1 cut(s)	130
Hin1II	CATG	4 cut(s)	134, 380, 503, 547
Hin6I	GCGC	1 cut(s)	128
HinP1I	GCGC	1 cut(s)	128
HincII	GTYRAC	1 cut(s)	374
HindII	GTYRAC	1 cut(s)	374
HinfI	GANTC	1 cut(s)	479
HpaII	CCGG	1 cut(s)	293
HphI	GGTGA	1 cut(s)	472
Hpy166II	GTNNAC	2 cut(s)	144, 374
Hpy188I	TCNGA	2 cut(s)	40, 339
Hpy188III	TCNNGA	2 cut(s)	163, 476
Hpy8I	GTNNAC	2 cut(s)	144, 374
HpyAV	CCTTC	4 cut(s)	226, 271, 279, 427
HpyCH4III	ACNGT	2 cut(s)	218, 424
HpyCH4IV	ACGT	1 cut(s)	399
HpyCH4V	TGCA	3 cut(s)	23, 214, 397
HpyF10VI	GCNNNNNNNGC	3 cut(s)	80, 494, 538
HpyF3I	CTNAG	1 cut(s)	483
HpySE526I	ACGT	1 cut(s)	399
Hsp92II	CATG	4 cut(s)	134, 380, 503, 547
HspAI	GCGC	1 cut(s)	128
KroI	GCCGGC	1 cut(s)	292
KroNI	GCCGGC	1 cut(s)	294
Kzo9I	GATC	3 cut(s)	106, 580, 622
LmnI	GCTCC	2 cut(s)	169, 318
LweI	GCATC	1 cut(s)	621
MaeI	CTAG	2 cut(s)	75, 330
MaeII	ACGT	1 cut(s)	399
MaeIII	GTNAC	4 cut(s)	460, 476, 560, 571
MalI	GATC	3 cut(s)	108, 582, 624
MbiI	CCGCTC	1 cut(s)	70
MboI	GATC	3 cut(s)	106, 580, 622
MboII	GAAGA	2 cut(s)	161, 442
MflI	RGATCY	1 cut(s)	580
MhlI	GDGCHC	2 cut(s)	337, 534
MluCI	AATT	3 cut(s)	94, 439, 513
MlyI	GAGTC	1 cut(s)	473
MmeI	TCCRAC	2 cut(s)	223, 262
MnlI	CCTC	5 cut(s)	6, 73, 132, 239, 336
MroNI	GCCGGC	1 cut(s)	292
MslI	CAYNNNNRTG	2 cut(s)	114, 381
MspI	CCGG	1 cut(s)	293
MwoI	GCNNNNNNNGC	3 cut(s)	80, 494, 538
NaeI	GCCGGC	1 cut(s)	294
NdeII	GATC	3 cut(s)	106, 580, 622
NgoMIV	GCCGGC	1 cut(s)	292
NlaIII	CATG	4 cut(s)	134, 380, 503, 547
NlaIV	GGNNCC	3 cut(s)	171, 532, 568
NmuCI	GTSAC	3 cut(s)	460, 476, 560
NspI	RCATGY	1 cut(s)	380
PaqCI	CACCTGC	1 cut(s)	14
PciI	ACATGT	1 cut(s)	376
PdiI	GCCGGC	1 cut(s)	294
PkrI	GCNGC	2 cut(s)	85, 315
Ple19I	CGATCG	1 cut(s)	625
PleI	GAGTC	1 cut(s)	473
PmaCI	CACGTG	1 cut(s)	400
PmlI	CACGTG	1 cut(s)	400
PpsI	GAGTC	1 cut(s)	473
Ppu21I	YACGTR	1 cut(s)	400
PscI	ACATGT	1 cut(s)	376
PspCI	CACGTG	1 cut(s)	400
PspN4I	GGNNCC	3 cut(s)	171, 532, 568
PspOMI	GGGCCC	1 cut(s)	530
PspPI	GGNCC	5 cut(s)	144, 348, 530, 531, 566
PsuI	RGATCY	1 cut(s)	580
PvuI	CGATCG	1 cut(s)	625
RseI	CAYNNNNRTG	2 cut(s)	114, 381
SatI	GCNGC	2 cut(s)	84, 314
Sau3AI	GATC	3 cut(s)	106, 580, 622
Sau96I	GGNCC	5 cut(s)	144, 348, 530, 531, 566
SchI	GAGTC	1 cut(s)	473
SduI	GDGCHC	2 cut(s)	337, 534
SfaNI	GCATC	1 cut(s)	621
SinI	GGWCC	2 cut(s)	144, 566
SmiMI	CAYNNNNRTG	2 cut(s)	114, 381
Sse9I	AATT	3 cut(s)	94, 439, 513
SsiI	CCGC	4 cut(s)	70, 83, 313, 316
SspMI	CTAG	2 cut(s)	75, 330
StyI	CCWWGG	1 cut(s)	308
TaaI	ACNGT	2 cut(s)	218, 424
TaiI	ACGT	1 cut(s)	402
TaqI	TCGA	4 cut(s)	112, 162, 222, 304
TaqII	GACCGA	1 cut(s)	161
TasI	AATT	3 cut(s)	94, 439, 513
TauI	GCSGC	2 cut(s)	86, 316
TseFI	GTSAC	3 cut(s)	460, 476, 560
Tsp45I	GTSAC	3 cut(s)	460, 476, 560
TspGWI	ACGGA	2 cut(s)	182, 579
VpaK11BI	GGWCC	2 cut(s)	144, 566
XapI	RAATTY	1 cut(s)	513
XceI	RCATGY	1 cut(s)	380
XcmI	CCANNNNNNNNNTGG	1 cut(s)	358
XspI	CTAG	2 cut(s)	75, 330

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.