Rroxscaffold_1G00019050

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0001093
Physical Location & Seq
Reverse (-)
23168906 .. 23169207
302 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00019050.1

Sequence Viewer

Length: 231 bp
ATGCGGTCGCCGTACGAGTTGGGGTTGATGATGGTTGTTGCAGATGATGGTGCCTGCGCTGGTAGTGGGGACTGGGAGCTCACAGGAGAGGCCAACAACGCCGTTTCGGAGGTGGGAGTCGCCGAGGAAGGTGAGGTTGTGGAAGTTAAAAAGGAGGAGAAGTCAAAGCTGAGGTTCTCAGCGAGGGAGGAAGAAGAGGGAGAGGAGAGAGAAAGCAAGAAGCTTTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

76

Amino Acids

8.37

Weight (kDa)

4.4

Isoelectric Point (pI)

48.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 50
AciI CCGC 1 cut(s) 4
AfaI GTAC 1 cut(s) 14
AluBI AGCT 3 cut(s) 79, 169, 223
AluI AGCT 3 cut(s) 79, 169, 223
Alw21I GWGCWC 1 cut(s) 81
AoxI GGCC 1 cut(s) 90
AspLEI GCGC 1 cut(s) 59
AsuHPI GGTGA 1 cut(s) 143
BanI GGYRCC 1 cut(s) 50
BanII GRGCYC 1 cut(s) 81
Bbv12I GWGCWC 1 cut(s) 81
BbvCI CCTCAGC 1 cut(s) 170
BccI CCATC 2 cut(s) 25, 41
BceAI ACGGC 1 cut(s) 86
BmiI GGNNCC 1 cut(s) 52
BmrI ACTGGG 1 cut(s) 82
BmuI ACTGGG 1 cut(s) 82
Bpu10I CCTNAGC 1 cut(s) 170
BsaJI CCNNGG 1 cut(s) 123
BsaXI ACNNNNNCTCC 2 cut(s) 146, 176
Bse1I ACTGG 1 cut(s) 77
BseDI CCNNGG 1 cut(s) 123
BseMII CTCAG 2 cut(s) 161, 192
BseNI ACTGG 1 cut(s) 77
BseRI GAGGAG 2 cut(s) 170, 218
Bsh1285I CGRYCG 1 cut(s) 8
BshFI GGCC 1 cut(s) 92
BshNI GGYRCC 1 cut(s) 50
BsiEI CGRYCG 1 cut(s) 8
BsiHKAI GWGCWC 1 cut(s) 81
BsiWI CGTACG 1 cut(s) 12
BslFI GGGAC 1 cut(s) 83
BsmFI GGGAC 1 cut(s) 83
BsnI GGCC 1 cut(s) 92
Bsp1286I GDGCHC 1 cut(s) 81
BspACI CCGC 1 cut(s) 4
BspANI GGCC 1 cut(s) 92
BspCNI CTCAG 2 cut(s) 162, 191
BspLI GGNNCC 1 cut(s) 52
BspT107I GGYRCC 1 cut(s) 50
BsrI ACTGG 1 cut(s) 77
BssECI CCNNGG 1 cut(s) 123
Bst6I CTCTTC 1 cut(s) 189
BstC8I GCNNGC 1 cut(s) 55
BstDEI CTNAG 2 cut(s) 170, 178
BstHHI GCGC 1 cut(s) 59
BstMCI CGRYCG 1 cut(s) 8
BstMWI GCNNNNNNNGC 1 cut(s) 98
BsuRI GGCC 1 cut(s) 92
Cac8I GCNNGC 1 cut(s) 55
CfoI GCGC 1 cut(s) 59
Csp6I GTAC 1 cut(s) 13
CviJI RGCY 4 cut(s) 79, 92, 169, 223
CviKI_1 RGCY 4 cut(s) 79, 92, 169, 223
CviQI GTAC 1 cut(s) 13
DdeI CTNAG 2 cut(s) 170, 178
Eam1104I CTCTTC 1 cut(s) 189
EarI CTCTTC 1 cut(s) 189
Ecl136II GAGCTC 1 cut(s) 79
Eco24I GRGCYC 1 cut(s) 81
Eco53kI GAGCTC 1 cut(s) 79
EcoICRI GAGCTC 1 cut(s) 79
EcoT38I GRGCYC 1 cut(s) 81
FaqI GGGAC 1 cut(s) 83
FriOI GRGCYC 1 cut(s) 81
GlaI GCGC 1 cut(s) 58
HaeIII GGCC 1 cut(s) 92
HhaI GCGC 1 cut(s) 59
Hin6I GCGC 1 cut(s) 57
HinP1I GCGC 1 cut(s) 57
HindIII AAGCTT 1 cut(s) 221
HinfI GANTC 1 cut(s) 117
HphI GGTGA 1 cut(s) 143
Hpy188I TCNGA 1 cut(s) 109
HpyAV CCTTC 1 cut(s) 122
HpyCH4V TGCA 1 cut(s) 41
HpyF10VI GCNNNNNNNGC 1 cut(s) 98
HpyF3I CTNAG 2 cut(s) 170, 178
HspAI GCGC 1 cut(s) 57
LmnI GCTCC 1 cut(s) 76
LpnPI CCDG 4 cut(s) 45, 58, 67, 69
MboII GAAGA 2 cut(s) 203, 206
MhlI GDGCHC 1 cut(s) 81
MlyI GAGTC 1 cut(s) 126
MseI TTAA 1 cut(s) 147
MwoI GCNNNNNNNGC 1 cut(s) 98
NlaIV GGNNCC 1 cut(s) 52
NmeAIII GCCGAG 1 cut(s) 148
Pfl23II CGTACG 1 cut(s) 12
PleI GAGTC 1 cut(s) 125
PpsI GAGTC 1 cut(s) 125
Psp124BI GAGCTC 1 cut(s) 81
PspLI CGTACG 1 cut(s) 12
PspN4I GGNNCC 1 cut(s) 52
RsaI GTAC 1 cut(s) 14
RsaNI GTAC 1 cut(s) 13
SacI GAGCTC 1 cut(s) 81
SaqAI TTAA 1 cut(s) 147
SchI GAGTC 1 cut(s) 126
SduI GDGCHC 1 cut(s) 81
SetI ASST 7 cut(s) 81, 114, 133, 138, 171, 176, 225
SgeI CNNG 7 cut(s) 28, 66, 72, 85, 96, 136, 195
SsiI CCGC 1 cut(s) 4
SstI GAGCTC 1 cut(s) 81
Tru1I TTAA 1 cut(s) 147
Tru9I TTAA 1 cut(s) 147
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.