Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002430.1

Orthogroup ID

OG0001093

Physical Location & Seq

Genomic Coordinates Forward (+)

157 .. 564

Gene Structure 408 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002430.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

atggaaattggtcgagatataccagaacaagaattgcacttcaacttgggaaagggtgcattggcacgaaatgctaaagaaagctcaagagattacaagtcaactggtcaagactttgagagaaggaaaagtggtgttagaagtgaagatggatttgagaggtaccgcgtcagtgctgagaaagccactgataatagagttttctctcctagaagtggaaattcaaccaagaacggaagagatttccctaggagagactatgatgaaagagctgcatttaagaattttgatgaattcagtgatattatggacaagccacgagtttcgcaaatgcaaatggaggagagaatccagaagctagcaaaatcgtatgtactctattcttctttcgagtttttcctcttctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009451 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016070 GO:0016787 GO:0016788 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

135

Amino Acids

15.88

Weight (kDa)

8.86

Isoelectric Point (pI)

38.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001093)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G25400 AT1G25400 AT1G68440
fragaria_vesca	FvH4_4g27210 FvH4_5g09320 FvH4_5g18320 FvH4_5g36190 FvH4_5g36660 FvH4_6g02080 FvH4_6g18410 FvH4_6g37922 FvH4_6g48101
malus_domestica	MD13G1040500.v1.1 MD16G1041500.v1.1
prunus_persica	Prupe.1G312600_v2.0.a1
pyrus_communis	pycom13g03470 pycom16g03590
rosa_chinensis	RchiOBHm_Chr2g0089781 RchiOBHm_Chr2g0161601 RchiOBHm_Chr4g0435001 RchiOBHm_Chr5g0057351 RchiOBHm_Chr6g0279821 RchiOBHm_Chr7g0227101
rosa_laevigata	RLG00000006630 RLG00000007926
rosa_multiflora	Rmu_co7981798.1_g000001 Rmu_co8240437.1_g000001 Rmu_sc0000400.1_g000034 Rmu_sc0000869.1_g000026 Rmu_sc0001246.1_g000017 Rmu_sc0002430.1_g000001 Rmu_sc0004574.1_g000051 Rmu_sc0009868.1_g000002 Rmu_sc0010765.1_g000001
rosa_roxburghii	Rroxscaffold_1G00019050 Rroxscaffold_2G00088100 Rroxscaffold_5G00376170
rosa_rugosa	Rorug02G0108200 Rorug02G0398300 Rorug02G0435100 Rorug03G0104500 Rorug03G0112000 Rorug03G0209100 Rorug04G0021800 Rorug04G0169800 Rorug04G0281500 Rorug04G0390300 Rorug05G0263200 Rorug05G0281200 Rorug06G0472700 Rorug07G0039700 Rorug07G0207300
rosa_samantha	Rh4AG337000 Rh4BG161500 Rh4BG344900 Rh4CG359600 Rh4DG339400 Rh5DG431200
rosa_wichuraiana	Rw4G029380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	162
AccB1I	GGYRCC	1 cut(s)	162
AccII	CGCG	1 cut(s)	168
AciI	CCGC	1 cut(s)	166
AcsI	RAATTY	3 cut(s)	220, 283, 293
AfaI	GTAC	2 cut(s)	164, 375
AfiI	CCNNNNNNNGG	1 cut(s)	215
AgsI	TTSAA	2 cut(s)	43, 225
AluBI	AGCT	3 cut(s)	84, 272, 358
AluI	AGCT	3 cut(s)	84, 272, 358
Alw26I	GTCTC	1 cut(s)	249
ApeKI	GCWGC	1 cut(s)	272
ApoI	RAATTY	3 cut(s)	220, 283, 293
Asp718I	GGTACC	1 cut(s)	162
AspA2I	CCTAGG	1 cut(s)	248
AsuNHI	GCTAGC	1 cut(s)	358
AvrII	CCTAGG	1 cut(s)	248
BanI	GGYRCC	1 cut(s)	162
BauI	CACGAG	1 cut(s)	318
BbvI	GCAGC	1 cut(s)	259
BccI	CCATC	1 cut(s)	143
BcoDI	GTCTC	1 cut(s)	249
BfaI	CTAG	3 cut(s)	210, 249, 359
BisI	GCNGC	1 cut(s)	273
BlnI	CCTAGG	1 cut(s)	248
BlsI	GCNGC	1 cut(s)	274
BmiI	GGNNCC	1 cut(s)	164
BmtI	GCTAGC	1 cut(s)	362
BpuEI	CTTGAG	1 cut(s)	70
BsaJI	CCNNGG	1 cut(s)	248
Bsc4I	CCNNNNNNNGG	1 cut(s)	215
Bse1I	ACTGG	1 cut(s)	109
BseDI	CCNNGG	1 cut(s)	248
BseLI	CCNNNNNNNGG	1 cut(s)	215
BseMII	CTCAG	1 cut(s)	168
BseNI	ACTGG	1 cut(s)	109
BseRI	GAGGAG	1 cut(s)	356
BseXI	GCAGC	1 cut(s)	259
Bsh1236I	CGCG	1 cut(s)	168
BshNI	GGYRCC	1 cut(s)	162
BslI	CCNNNNNNNGG	1 cut(s)	215
BsmAI	GTCTC	1 cut(s)	249
BspACI	CCGC	1 cut(s)	166
BspCNI	CTCAG	1 cut(s)	169
BspFNI	CGCG	1 cut(s)	168
BspLI	GGNNCC	1 cut(s)	164
BspOI	GCTAGC	1 cut(s)	362
BspT107I	GGYRCC	1 cut(s)	162
BsrI	ACTGG	1 cut(s)	109
BssECI	CCNNGG	1 cut(s)	248
BssSI	CACGAG	1 cut(s)	318
BssT1I	CCWWGG	1 cut(s)	248
Bst2BI	CACGAG	1 cut(s)	318
Bst6I	CTCTTC	1 cut(s)	232
BstAPI	GCANNNNNTGC	1 cut(s)	71
BstC8I	GCNNGC	1 cut(s)	360
BstDEI	CTNAG	1 cut(s)	177
BstFNI	CGCG	1 cut(s)	168
BstMAI	GTCTC	1 cut(s)	249
BstMWI	GCNNNNNNNGC	2 cut(s)	71, 182
BstUI	CGCG	1 cut(s)	168
BstV1I	GCAGC	1 cut(s)	259
BtsIMutI	CAGTG	3 cut(s)	178, 186, 304
Cac8I	GCNNGC	1 cut(s)	360
CseI	GACGC	1 cut(s)	157
Csp6I	GTAC	2 cut(s)	163, 374
CviJI	RGCY	5 cut(s)	84, 185, 272, 316, 358
CviKI_1	RGCY	5 cut(s)	84, 185, 272, 316, 358
CviQI	GTAC	2 cut(s)	163, 374
DdeI	CTNAG	1 cut(s)	177
Eam1104I	CTCTTC	1 cut(s)	232
EarI	CTCTTC	1 cut(s)	232
Eco130I	CCWWGG	1 cut(s)	248
EcoRI	GAATTC	1 cut(s)	293
EcoT14I	CCWWGG	1 cut(s)	248
ErhI	CCWWGG	1 cut(s)	248
FaiI	YATR	4 cut(s)	20, 261, 308, 372
Fnu4HI	GCNGC	1 cut(s)	273
Fsp4HI	GCNGC	1 cut(s)	273
FspBI	CTAG	3 cut(s)	210, 249, 359
GluI	GCNGC	1 cut(s)	273
HgaI	GACGC	1 cut(s)	157
HincII	GTYRAC	1 cut(s)	102
HindII	GTYRAC	1 cut(s)	102
HinfI	GANTC	1 cut(s)	348
Hpy166II	GTNNAC	1 cut(s)	102
Hpy188III	TCNNGA	4 cut(s)	14, 87, 110, 352
Hpy8I	GTNNAC	1 cut(s)	102
HpyAV	CCTTC	1 cut(s)	117
HpyCH4V	TGCA	4 cut(s)	37, 59, 275, 334
HpyF10VI	GCNNNNNNNGC	2 cut(s)	71, 182
HpyF3I	CTNAG	1 cut(s)	177
KpnI	GGTACC	1 cut(s)	166
LpnPI	CCDG	3 cut(s)	36, 90, 365
Lsp1109I	GCAGC	1 cut(s)	259
MaeI	CTAG	3 cut(s)	210, 249, 359
MboII	GAAGA	4 cut(s)	158, 249, 375, 394
MluCI	AATT	5 cut(s)	6, 32, 220, 283, 293
MnlI	CCTC	2 cut(s)	153, 334
MseI	TTAA	1 cut(s)	279
MvnI	CGCG	1 cut(s)	168
MwoI	GCNNNNNNNGC	2 cut(s)	71, 182
NheI	GCTAGC	1 cut(s)	358
NlaIV	GGNNCC	1 cut(s)	164
PfeI	GAWTC	1 cut(s)	348
PkrI	GCNGC	1 cut(s)	274
PspN4I	GGNNCC	1 cut(s)	164
RsaI	GTAC	2 cut(s)	164, 375
RsaNI	GTAC	2 cut(s)	163, 374
SaqAI	TTAA	1 cut(s)	279
SatI	GCNGC	1 cut(s)	273
SetI	ASST	4 cut(s)	86, 164, 274, 360
SmlI	CTYRAG	1 cut(s)	85
SmoI	CTYRAG	1 cut(s)	85
Sse9I	AATT	5 cut(s)	6, 32, 220, 283, 293
SsiI	CCGC	1 cut(s)	166
SspMI	CTAG	3 cut(s)	210, 249, 359
StyI	CCWWGG	1 cut(s)	248
TaqI	TCGA	2 cut(s)	13, 390
TasI	AATT	5 cut(s)	6, 32, 220, 283, 293
TatI	WGTACW	1 cut(s)	373
TfiI	GAWTC	1 cut(s)	348
Tru1I	TTAA	1 cut(s)	279
Tru9I	TTAA	1 cut(s)	279
TscAI	CASTG	3 cut(s)	178, 193, 304
TseI	GCWGC	1 cut(s)	272
TspDTI	ATGAA	2 cut(s)	279, 306
TspGWI	ACGGA	1 cut(s)	249
TspRI	CASTG	3 cut(s)	178, 193, 304
XapI	RAATTY	3 cut(s)	220, 283, 293
XmaJI	CCTAGG	1 cut(s)	248
XspI	CTAG	3 cut(s)	210, 249, 359

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.