FvH4_6g18410

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0001093
Physical Location & Seq
Forward (+)
12155648 .. 12157208
1561 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g18410.t1

Sequence Viewer

Length: 459 bp
ATGAAGACAAGAACTTCAAACCATTCCAGTTTCGAGGTGTCAACAGGGTTTTCTGGTTTTTGGTTTTGGCTAGGTTTAATAAGTCTCTCCTCTTTTGAGCGAGGGTTGGGGTGTCTTGGTTTGGTTGGTGTGCTACTTTGGTGGCGTCATACCTGGGGATTATGGTTTATCTCGGTGTTGGCTGGTTGTCAACATGTGGGTGGATTACCTTTGCACGTGGTCTGGTGGTTTTTAGACACGGTGTTGAAGAAGGATAATTGGCTCGGTTTATTGTTGGTGGCAAGGTTGTATCGTGACTCTCAGGCTTTGGTAGCTCATGTTGAGCGTAAAATTGGCTTAGGGGTTGGGCCCTATCGGCTCATGGATGTTGCTTTTGGTGACGGACCCGTAACTATGGATCTTGTTAGGAATGTGTGTTGTGGTGTAGGCACCATAACCGGTCGTTCCATTGTGCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

153

Amino Acids

16.9

Weight (kDa)

9.13

Isoelectric Point (pI)

15.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 428
AclWI GGATC 1 cut(s) 405
AcvI CACGTG 1 cut(s) 217
AcyI GRCGYC 1 cut(s) 145
AflIII ACRYGT 1 cut(s) 193
AgeI ACCGGT 1 cut(s) 437
AgsI TTSAA 2 cut(s) 18, 247
AjnI CCWGG 1 cut(s) 152
AluBI AGCT 1 cut(s) 314
AluI AGCT 1 cut(s) 314
Alw26I GTCTC 1 cut(s) 89
AlwI GGATC 1 cut(s) 405
AoxI GGCC 1 cut(s) 347
ApaI GGGCCC 1 cut(s) 351
AsiGI ACCGGT 1 cut(s) 437
AspS9I GGNCC 3 cut(s) 347, 348, 383
AsuHPI GGTGA 1 cut(s) 389
AvaII GGWCC 1 cut(s) 383
BaeGI GKGCMC 1 cut(s) 351
BanI GGYRCC 1 cut(s) 428
BanII GRGCYC 1 cut(s) 351
BbrPI CACGTG 1 cut(s) 217
BbsI GAAGAC 1 cut(s) 11
BciT130I CCWGG 1 cut(s) 154
BcoDI GTCTC 1 cut(s) 89
BfaI CTAG 1 cut(s) 71
BglI GCCNNNNNGGC 1 cut(s) 355
Bme1390I CCNGG 1 cut(s) 154
Bme18I GGWCC 1 cut(s) 383
BmgT120I GGNCC 3 cut(s) 347, 348, 383
BmiI GGNNCC 3 cut(s) 349, 385, 430
BmrFI CCNGG 1 cut(s) 154
BpiI GAAGAC 1 cut(s) 11
Bpu10I CCTNAGC 1 cut(s) 337
BsaAI YACGTR 1 cut(s) 217
BsaHI GRCGYC 1 cut(s) 145
BsaJI CCNNGG 1 cut(s) 153
BsaWI WCCGGW 1 cut(s) 437
Bse118I RCCGGY 1 cut(s) 437
Bse1I ACTGG 1 cut(s) 27
BseBI CCWGG 1 cut(s) 154
BseDI CCNNGG 1 cut(s) 153
BseGI GGATG 1 cut(s) 370
BseMII CTCAG 1 cut(s) 314
BseNI ACTGG 1 cut(s) 27
BseRI GAGGAG 1 cut(s) 79
BseSI GKGCMC 1 cut(s) 351
Bsh1285I CGRYCG 1 cut(s) 442
BshFI GGCC 1 cut(s) 349
BshNI GGYRCC 1 cut(s) 428
BshTI ACCGGT 1 cut(s) 437
BsiEI CGRYCG 1 cut(s) 442
BsiSI CCGG 1 cut(s) 438
BsmAI GTCTC 1 cut(s) 89
BsnI GGCC 1 cut(s) 349
Bsp120I GGGCCC 1 cut(s) 347
Bsp1286I GDGCHC 1 cut(s) 351
Bsp143I GATC 1 cut(s) 397
BspANI GGCC 1 cut(s) 349
BspCNI CTCAG 1 cut(s) 313
BspLI GGNNCC 3 cut(s) 349, 385, 430
BspPI GGATC 1 cut(s) 405
BspT107I GGYRCC 1 cut(s) 428
BsrFI RCCGGY 1 cut(s) 437
BsrI ACTGG 1 cut(s) 27
BssAI RCCGGY 1 cut(s) 437
BssECI CCNNGG 1 cut(s) 153
BssMI GATC 1 cut(s) 397
BssNI GRCGYC 1 cut(s) 145
Bst2UI CCWGG 1 cut(s) 154
Bst4CI ACNGT 1 cut(s) 241
BstACI GRCGYC 1 cut(s) 145
BstBAI YACGTR 1 cut(s) 217
BstDEI CTNAG 2 cut(s) 300, 337
BstF5I GGATG 1 cut(s) 370
BstKTI GATC 1 cut(s) 400
BstMAI GTCTC 1 cut(s) 89
BstMBI GATC 1 cut(s) 397
BstMCI CGRYCG 1 cut(s) 442
BstMWI GCNNNNNNNGC 2 cut(s) 311, 355
BstNI CCWGG 1 cut(s) 154
BstNSI RCATGY 1 cut(s) 197
BstSCI CCNGG 1 cut(s) 152
BstSLI GKGCMC 1 cut(s) 351
BstV2I GAAGAC 1 cut(s) 11
BstX2I RGATCY 1 cut(s) 397
BstYI RGATCY 1 cut(s) 397
BsuRI GGCC 1 cut(s) 349
BtsCI GGATG 1 cut(s) 370
Cfr10I RCCGGY 1 cut(s) 437
Cfr13I GGNCC 3 cut(s) 347, 348, 383
CseI GACGC 1 cut(s) 134
CspAI ACCGGT 1 cut(s) 437
CviAII CATG 3 cut(s) 194, 317, 361
CviJI RGCY 8 cut(s) 70, 182, 262, 305, 314, 336, 349, 358
CviKI_1 RGCY 8 cut(s) 70, 182, 262, 305, 314, 336, 349, 358
DdeI CTNAG 2 cut(s) 300, 337
DpnI GATC 1 cut(s) 399
DpnII GATC 1 cut(s) 397
Eco24I GRGCYC 1 cut(s) 351
Eco47I GGWCC 1 cut(s) 383
Eco72I CACGTG 1 cut(s) 217
EcoO109I RGGNCCY 1 cut(s) 348
EcoRII CCWGG 1 cut(s) 152
EcoT38I GRGCYC 1 cut(s) 351
FaeI CATG 3 cut(s) 197, 320, 364
FaiI YATR 7 cut(s) 150, 163, 195, 318, 362, 395, 434
FatI CATG 3 cut(s) 193, 316, 360
FokI GGATG 1 cut(s) 377
FriOI GRGCYC 1 cut(s) 351
FspBI CTAG 1 cut(s) 71
HaeIII GGCC 1 cut(s) 349
HapII CCGG 1 cut(s) 438
HgaI GACGC 1 cut(s) 134
Hin1I GRCGYC 1 cut(s) 145
Hin1II CATG 3 cut(s) 197, 320, 364
HincII GTYRAC 2 cut(s) 42, 191
HindII GTYRAC 2 cut(s) 42, 191
HinfI GANTC 1 cut(s) 296
HpaII CCGG 1 cut(s) 438
HphI GGTGA 1 cut(s) 389
Hpy166II GTNNAC 2 cut(s) 42, 191
Hpy188III TCNNGA 1 cut(s) 293
Hpy8I GTNNAC 2 cut(s) 42, 191
HpyAV CCTTC 1 cut(s) 244
HpyCH4III ACNGT 1 cut(s) 241
HpyCH4IV ACGT 1 cut(s) 216
HpyCH4V TGCA 1 cut(s) 214
HpyF10VI GCNNNNNNNGC 2 cut(s) 311, 355
HpyF3I CTNAG 2 cut(s) 300, 337
HpySE526I ACGT 1 cut(s) 216
Hsp92I GRCGYC 1 cut(s) 145
Hsp92II CATG 3 cut(s) 197, 320, 364
Kzo9I GATC 1 cut(s) 397
LpnPI CCDG 9 cut(s) 30, 39, 40, 139, 166, 168, 208, 287, 451
MaeI CTAG 1 cut(s) 71
MaeII ACGT 1 cut(s) 216
MaeIII GTNAC 3 cut(s) 293, 377, 388
MalI GATC 1 cut(s) 399
MboI GATC 1 cut(s) 397
MboII GAAGA 2 cut(s) 16, 259
MflI RGATCY 1 cut(s) 397
MhlI GDGCHC 1 cut(s) 351
MluCI AATT 2 cut(s) 256, 330
MlyI GAGTC 1 cut(s) 290
MnlI CCTC 3 cut(s) 28, 95, 100
MseI TTAA 1 cut(s) 77
MslI CAYNNNNRTG 1 cut(s) 198
MspI CCGG 1 cut(s) 438
MspR9I CCNGG 1 cut(s) 154
MvaI CCWGG 1 cut(s) 154
MwoI GCNNNNNNNGC 2 cut(s) 311, 355
NdeII GATC 1 cut(s) 397
NlaIII CATG 3 cut(s) 197, 320, 364
NlaIV GGNNCC 3 cut(s) 349, 385, 430
NmuCI GTSAC 2 cut(s) 293, 377
NspI RCATGY 1 cut(s) 197
PciI ACATGT 1 cut(s) 193
PinAI ACCGGT 1 cut(s) 437
PleI GAGTC 1 cut(s) 290
PmaCI CACGTG 1 cut(s) 217
PmlI CACGTG 1 cut(s) 217
PpsI GAGTC 1 cut(s) 290
Ppu21I YACGTR 1 cut(s) 217
PscI ACATGT 1 cut(s) 193
Psp6I CCWGG 1 cut(s) 152
PspCI CACGTG 1 cut(s) 217
PspGI CCWGG 1 cut(s) 152
PspN4I GGNNCC 3 cut(s) 349, 385, 430
PspOMI GGGCCC 1 cut(s) 347
PspPI GGNCC 3 cut(s) 347, 348, 383
PsuI RGATCY 1 cut(s) 397
RseI CAYNNNNRTG 1 cut(s) 198
SaqAI TTAA 1 cut(s) 77
Sau3AI GATC 1 cut(s) 397
Sau96I GGNCC 3 cut(s) 347, 348, 383
SchI GAGTC 1 cut(s) 290
ScrFI CCNGG 1 cut(s) 154
SduI GDGCHC 1 cut(s) 351
SetI ASST 7 cut(s) 39, 76, 155, 211, 219, 287, 316
SinI GGWCC 1 cut(s) 383
SmiMI CAYNNNNRTG 1 cut(s) 198
Sse9I AATT 2 cut(s) 256, 330
SspMI CTAG 1 cut(s) 71
StyD4I CCNGG 1 cut(s) 152
TaaI ACNGT 1 cut(s) 241
TaiI ACGT 1 cut(s) 219
TaqI TCGA 1 cut(s) 33
TasI AATT 2 cut(s) 256, 330
Tru1I TTAA 1 cut(s) 77
Tru9I TTAA 1 cut(s) 77
TseFI GTSAC 2 cut(s) 293, 377
Tsp45I GTSAC 2 cut(s) 293, 377
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 396
VpaK11BI GGWCC 1 cut(s) 383
XceI RCATGY 1 cut(s) 197
XspI CTAG 1 cut(s) 71
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.