FvH4_6g37922

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0001093
Physical Location & Seq
Reverse (-)
29950679 .. 29951215
537 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g37922.t1

Sequence Viewer

Length: 330 bp
ATGCAGTTGCTGTTTTGGACTGGGTGGAGCAGGTTTAGGCCTTCAATGGTACTGGTTTGGTGGGCTTGGACCAGTGGTGTGGTTTTGGGCCAGTATGCTACTTTGGTGGCGTTATTCCTGGCGACTATCGACTTTAATATCGTGTTGACGGCAAGGTTGTATCGTTACTCTCAAGACTGTGTAGCTCTTTCTGAGCGTGAAATTGGGTTAGGGGTTGGACCTACTTGGCTCATGGATATTGCTGTTGGCGATGGACCCGTAACTACAGATCTTTTTGGGAATGTGTGTCGTGGTGTAGGTACCATAACCGGTCATTCTATTATGCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

110

Amino Acids

12.07

Weight (kDa)

5.55

Isoelectric Point (pI)

14.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 21
Acc65I GGTACC 1 cut(s) 299
AccB1I GGYRCC 1 cut(s) 299
AfaI GTAC 2 cut(s) 51, 301
AgeI ACCGGT 1 cut(s) 308
AgsI TTSAA 1 cut(s) 45
AjnI CCWGG 1 cut(s) 117
AluBI AGCT 1 cut(s) 185
AluI AGCT 1 cut(s) 185
AlwNI CAGNNNCTG 1 cut(s) 10
AoxI GGCC 2 cut(s) 38, 88
AsiGI ACCGGT 1 cut(s) 308
Asp718I GGTACC 1 cut(s) 299
AspS9I GGNCC 4 cut(s) 69, 88, 218, 254
AvaII GGWCC 3 cut(s) 69, 218, 254
BanI GGYRCC 1 cut(s) 299
BccI CCATC 1 cut(s) 245
BceAI ACGGC 1 cut(s) 165
BciT130I CCWGG 1 cut(s) 119
BfmI CTRYAG 1 cut(s) 264
BfuAI ACCTGC 1 cut(s) 21
BglII AGATCT 1 cut(s) 268
Bme1390I CCNGG 1 cut(s) 119
Bme18I GGWCC 3 cut(s) 69, 218, 254
BmgT120I GGNCC 4 cut(s) 69, 88, 218, 254
BmiI GGNNCC 2 cut(s) 256, 301
BmrFI CCNGG 1 cut(s) 119
BmrI ACTGGG 1 cut(s) 30
BmuI ACTGGG 1 cut(s) 30
BpuEI CTTGAG 1 cut(s) 156
BsaWI WCCGGW 1 cut(s) 308
Bse118I RCCGGY 1 cut(s) 308
Bse1I ACTGG 4 cut(s) 25, 57, 72, 91
BseBI CCWGG 1 cut(s) 119
BseMII CTCAG 1 cut(s) 183
BseNI ACTGG 4 cut(s) 25, 57, 72, 91
BshFI GGCC 2 cut(s) 40, 90
BshNI GGYRCC 1 cut(s) 299
BshTI ACCGGT 1 cut(s) 308
BsiSI CCGG 1 cut(s) 309
BsnI GGCC 2 cut(s) 40, 90
Bsp143I GATC 1 cut(s) 268
BspANI GGCC 2 cut(s) 40, 90
BspCNI CTCAG 1 cut(s) 184
BspLI GGNNCC 2 cut(s) 256, 301
BspMI ACCTGC 1 cut(s) 21
BspT107I GGYRCC 1 cut(s) 299
BsrFI RCCGGY 1 cut(s) 308
BsrI ACTGG 4 cut(s) 25, 57, 72, 91
BssAI RCCGGY 1 cut(s) 308
BssMI GATC 1 cut(s) 268
Bst2UI CCWGG 1 cut(s) 119
Bst4CI ACNGT 1 cut(s) 179
BstDEI CTNAG 1 cut(s) 192
BstKTI GATC 1 cut(s) 271
BstMBI GATC 1 cut(s) 268
BstNI CCWGG 1 cut(s) 119
BstSCI CCNGG 1 cut(s) 117
BstSFI CTRYAG 1 cut(s) 264
BstX2I RGATCY 1 cut(s) 268
BstXI CCANNNNNNTGG 1 cut(s) 79
BstYI RGATCY 1 cut(s) 268
BsuRI GGCC 2 cut(s) 40, 90
BtgZI GCGATG 1 cut(s) 264
BtsIMutI CAGTG 1 cut(s) 79
BveI ACCTGC 1 cut(s) 21
CaiI CAGNNNCTG 1 cut(s) 10
Cfr10I RCCGGY 1 cut(s) 308
Cfr13I GGNCC 4 cut(s) 69, 88, 218, 254
Csp6I GTAC 2 cut(s) 50, 300
CspAI ACCGGT 1 cut(s) 308
CviAII CATG 1 cut(s) 232
CviJI RGCY 5 cut(s) 40, 65, 90, 185, 229
CviKI_1 RGCY 5 cut(s) 40, 65, 90, 185, 229
CviQI GTAC 2 cut(s) 50, 300
DdeI CTNAG 1 cut(s) 192
DpnI GATC 1 cut(s) 270
DpnII GATC 1 cut(s) 268
Eco147I AGGCCT 1 cut(s) 40
Eco47I GGWCC 3 cut(s) 69, 218, 254
EcoRII CCWGG 1 cut(s) 117
FaeI CATG 1 cut(s) 235
FaiI YATR 4 cut(s) 96, 233, 305, 323
FatI CATG 1 cut(s) 231
HaeIII GGCC 2 cut(s) 40, 90
HapII CCGG 1 cut(s) 309
Hin1II CATG 1 cut(s) 235
HincII GTYRAC 1 cut(s) 147
HindII GTYRAC 1 cut(s) 147
HpaII CCGG 1 cut(s) 309
Hpy166II GTNNAC 1 cut(s) 147
Hpy188I TCNGA 1 cut(s) 193
Hpy188III TCNNGA 1 cut(s) 173
Hpy8I GTNNAC 1 cut(s) 147
HpyAV CCTTC 1 cut(s) 51
HpyCH4III ACNGT 1 cut(s) 179
HpyCH4V TGCA 1 cut(s) 4
HpyF3I CTNAG 1 cut(s) 192
Hsp92II CATG 1 cut(s) 235
KpnI GGTACC 1 cut(s) 303
Kzo9I GATC 1 cut(s) 268
LmnI GCTCC 1 cut(s) 27
LpnPI CCDG 8 cut(s) 6, 16, 38, 85, 104, 104, 131, 322
MaeIII GTNAC 2 cut(s) 164, 259
MalI GATC 1 cut(s) 270
MboI GATC 1 cut(s) 268
MflI RGATCY 1 cut(s) 268
MluCI AATT 1 cut(s) 201
MmeI TCCRAC 1 cut(s) 196
MseI TTAA 1 cut(s) 135
MspI CCGG 1 cut(s) 309
MspR9I CCNGG 1 cut(s) 119
MvaI CCWGG 1 cut(s) 119
NdeII GATC 1 cut(s) 268
NlaIII CATG 1 cut(s) 235
NlaIV GGNNCC 2 cut(s) 256, 301
PceI AGGCCT 1 cut(s) 40
PinAI ACCGGT 1 cut(s) 308
Psp6I CCWGG 1 cut(s) 117
PspGI CCWGG 1 cut(s) 117
PspN4I GGNNCC 2 cut(s) 256, 301
PspPI GGNCC 4 cut(s) 69, 88, 218, 254
PstNI CAGNNNCTG 1 cut(s) 10
PsuI RGATCY 1 cut(s) 268
RsaI GTAC 2 cut(s) 51, 301
RsaNI GTAC 2 cut(s) 50, 300
SaqAI TTAA 1 cut(s) 135
Sau3AI GATC 1 cut(s) 268
Sau96I GGNCC 4 cut(s) 69, 88, 218, 254
ScrFI CCNGG 1 cut(s) 119
SetI ASST 5 cut(s) 35, 158, 187, 223, 301
SfcI CTRYAG 1 cut(s) 264
SinI GGWCC 3 cut(s) 69, 218, 254
SmlI CTYRAG 1 cut(s) 171
SmoI CTYRAG 1 cut(s) 171
Sse9I AATT 1 cut(s) 201
SseBI AGGCCT 1 cut(s) 40
StuI AGGCCT 1 cut(s) 40
StyD4I CCNGG 1 cut(s) 117
TaaI ACNGT 1 cut(s) 179
TaqI TCGA 1 cut(s) 129
TasI AATT 1 cut(s) 201
Tru1I TTAA 1 cut(s) 135
Tru9I TTAA 1 cut(s) 135
TscAI CASTG 1 cut(s) 79
TspRI CASTG 1 cut(s) 79
VpaK11BI GGWCC 3 cut(s) 69, 218, 254
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.