Rh4BG161500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0001093
Physical Location & Seq
Reverse (-)
29120221 .. 29120816
596 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG161500.1

Sequence Viewer

Length: 225 bp
ATGGTCGAAGAAGCGGATGGGGGAGTTGTAGAGGACGGAGTCGGCGTAGGAGGTGGGGACGGGGAGGTCGCCGGTGAGGCCGACGACGCCGTTGCTGATGTGGGAGTTGCGCGGGAAGGCGAGGTTGTGGAAGTTGAAGGAGGGGAAGTTGAAGATGAGGTTCTCGGCGGCGGCGGCGGAGAGAGAGAGAGTTTTGGGATTGGGTATTGTGAGGATAATGGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

74

Amino Acids

7.17

Weight (kDa)

4.05

Isoelectric Point (pI)

21.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 65
AccII CGCG 1 cut(s) 112
AciI CCGC 6 cut(s) 14, 112, 168, 171, 174, 177
AcyI GRCGYC 1 cut(s) 87
AgsI TTSAA 2 cut(s) 137, 152
AoxI GGCC 1 cut(s) 78
AspLEI GCGC 1 cut(s) 112
AsuHPI GGTGA 1 cut(s) 86
BccI CCATC 1 cut(s) 11
BceAI ACGGC 1 cut(s) 74
BcgI CGANNNNNNTGC 2 cut(s) 74, 108
BglI GCCNNNNNGGC 1 cut(s) 77
BisI GCNGC 3 cut(s) 169, 172, 175
BlsI GCNGC 3 cut(s) 170, 173, 176
BsaHI GRCGYC 1 cut(s) 87
BsaXI ACNNNNNCTCC 4 cut(s) 30, 60, 132, 162
Bse118I RCCGGY 1 cut(s) 71
BseGI GGATG 1 cut(s) 22
Bsh1236I CGCG 1 cut(s) 112
BshFI GGCC 1 cut(s) 80
BsiSI CCGG 1 cut(s) 72
BslFI GGGAC 1 cut(s) 71
BsmFI GGGAC 1 cut(s) 71
BsnI GGCC 1 cut(s) 80
BspACI CCGC 6 cut(s) 14, 112, 168, 171, 174, 177
BspANI GGCC 1 cut(s) 80
BspFNI CGCG 1 cut(s) 112
BsrFI RCCGGY 1 cut(s) 71
BssAI RCCGGY 1 cut(s) 71
BssNI GRCGYC 1 cut(s) 87
BstACI GRCGYC 1 cut(s) 87
BstF5I GGATG 1 cut(s) 22
BstFNI CGCG 1 cut(s) 112
BstHHI GCGC 1 cut(s) 112
BstMWI GCNNNNNNNGC 3 cut(s) 77, 86, 174
BstUI CGCG 1 cut(s) 112
BsuRI GGCC 1 cut(s) 80
BtsCI GGATG 1 cut(s) 22
CfoI GCGC 1 cut(s) 112
Cfr10I RCCGGY 1 cut(s) 71
CseI GACGC 1 cut(s) 95
CviJI RGCY 1 cut(s) 80
CviKI_1 RGCY 1 cut(s) 80
DrdI GACNNNNNNGTC 1 cut(s) 65
DseDI GACNNNNNNGTC 1 cut(s) 65
EciI GGCGGA 1 cut(s) 192
FaqI GGGAC 1 cut(s) 71
FauI CCCGC 1 cut(s) 105
Fnu4HI GCNGC 3 cut(s) 169, 172, 175
FokI GGATG 1 cut(s) 29
Fsp4HI GCNGC 3 cut(s) 169, 172, 175
GlaI GCGC 1 cut(s) 111
GluI GCNGC 3 cut(s) 169, 172, 175
HaeIII GGCC 1 cut(s) 80
HapII CCGG 1 cut(s) 72
HgaI GACGC 1 cut(s) 95
HhaI GCGC 1 cut(s) 112
Hin1I GRCGYC 1 cut(s) 87
Hin6I GCGC 1 cut(s) 110
HinP1I GCGC 1 cut(s) 110
HinfI GANTC 1 cut(s) 39
HpaII CCGG 1 cut(s) 72
HphI GGTGA 1 cut(s) 86
Hpy99I CGWCG 2 cut(s) 86, 89
HpyAV CCTTC 2 cut(s) 110, 131
HpyF10VI GCNNNNNNNGC 3 cut(s) 77, 86, 174
Hsp92I GRCGYC 1 cut(s) 87
HspAI GCGC 1 cut(s) 110
LpnPI CCDG 1 cut(s) 85
MboII GAAGA 2 cut(s) 20, 164
MlyI GAGTC 1 cut(s) 48
MnlI CCTC 8 cut(s) 25, 44, 58, 70, 115, 134, 151, 205
MspI CCGG 1 cut(s) 72
MvnI CGCG 1 cut(s) 112
MwoI GCNNNNNNNGC 3 cut(s) 77, 86, 174
NmeAIII GCCGAG 1 cut(s) 144
PcsI WCGNNNNNNNCGW 1 cut(s) 42
PflFI GACNNNGTC 1 cut(s) 38
PkrI GCNGC 3 cut(s) 170, 173, 176
PleI GAGTC 1 cut(s) 47
PpsI GAGTC 1 cut(s) 47
PsyI GACNNNGTC 1 cut(s) 38
SatI GCNGC 3 cut(s) 169, 172, 175
SchI GAGTC 1 cut(s) 48
SetI ASST 4 cut(s) 55, 69, 126, 162
SgeI CNNG 6 cut(s) 73, 84, 123, 125, 133, 176
SgrAI CRCCGGYG 1 cut(s) 71
SsiI CCGC 6 cut(s) 14, 112, 168, 171, 174, 177
TaqI TCGA 1 cut(s) 6
TauI GCSGC 3 cut(s) 171, 174, 177
TspGWI ACGGA 1 cut(s) 51
Tth111I GACNNNGTC 1 cut(s) 38
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.