Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004574.1

Orthogroup ID

OG0001093

Physical Location & Seq

Genomic Coordinates Forward (+)

155887 .. 158791

Gene Structure 2905 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004574.1_g000051.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

atgtcagacaacagggatatatcacagaaggaagcagcatttgcacttgcggcccttatggaaattccatatcagtacagagccacccaaaggcttcaactttccagttatgaatcagaaggtggtccacgtacaaggccacttccacctccacgcgatgtgatcaatcatgataatgcagttaaatcaatcccaccaatgacaagcattccaaaagtcgaggcatcagctcccgtgctgccagaagctcctgtggagtcggtgtgccccatttgcctgacaaatccaaaggacatggctttcggatgtggtcatacggagcagtggtcgctcgtccgacagcgcctcctcgtcgatcggggcttctcgcctcagcgacgaatggcaggtgttgtcggatgggagatgggggtcttgggaccttcgactttgtcttctttgcggtggtcggggcttgacatgcttcttctctactctcaggcagaggcgcaggtggggaggaggaattcgacggcggcgcaggcttggaacaaggggtcagaggccagatcgtggagacggtttgccatggatcgtatggccctgatctctgttcggaggtgggtcgctcggcgatgtttgcagcagtgggttcgggctcccgggaggatggacacagatgggtggagcgattttgttccgaggtggaagagctcggcgattcctgacttgatacacatttacgcaagcgtacgtatcgttgtcaagatagggaaatattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006807 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009987 GO:0010033 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0023052 GO:0032446 GO:0032870 GO:0036211 GO:0042221 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0070647 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0071704 GO:0098542 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Copine zf-C3HC4_3

Protein Analysis

253

Amino Acids

28.46

Weight (kDa)

9.9

Isoelectric Point (pI)

58.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001093)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G25400 AT1G25400 AT1G68440
fragaria_vesca	FvH4_4g27210 FvH4_5g09320 FvH4_5g18320 FvH4_5g36190 FvH4_5g36660 FvH4_6g02080 FvH4_6g18410 FvH4_6g37922 FvH4_6g48101
malus_domestica	MD13G1040500.v1.1 MD16G1041500.v1.1
prunus_persica	Prupe.1G312600_v2.0.a1
pyrus_communis	pycom13g03470 pycom16g03590
rosa_chinensis	RchiOBHm_Chr2g0089781 RchiOBHm_Chr2g0161601 RchiOBHm_Chr4g0435001 RchiOBHm_Chr5g0057351 RchiOBHm_Chr6g0279821 RchiOBHm_Chr7g0227101
rosa_laevigata	RLG00000006630 RLG00000007926
rosa_multiflora	Rmu_co7981798.1_g000001 Rmu_co8240437.1_g000001 Rmu_sc0000400.1_g000034 Rmu_sc0000869.1_g000026 Rmu_sc0001246.1_g000017 Rmu_sc0002430.1_g000001 Rmu_sc0004574.1_g000051 Rmu_sc0009868.1_g000002 Rmu_sc0010765.1_g000001
rosa_roxburghii	Rroxscaffold_1G00019050 Rroxscaffold_2G00088100 Rroxscaffold_5G00376170
rosa_rugosa	Rorug02G0108200 Rorug02G0398300 Rorug02G0435100 Rorug03G0104500 Rorug03G0112000 Rorug03G0209100 Rorug04G0021800 Rorug04G0169800 Rorug04G0281500 Rorug04G0390300 Rorug05G0263200 Rorug05G0281200 Rorug06G0472700 Rorug07G0039700 Rorug07G0207300
rosa_samantha	Rh4AG337000 Rh4BG161500 Rh4BG344900 Rh4CG359600 Rh4DG339400 Rh5DG431200
rosa_wichuraiana	Rw4G029380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	377, 481
Acc36I	ACCTGC	2 cut(s)	377, 481
AccB7I	CCANNNNNTGG	1 cut(s)	552
AccII	CGCG	1 cut(s)	156
AciI	CCGC	3 cut(s)	50, 442, 515
AclWI	GGATC	1 cut(s)	579
AcsI	RAATTY	2 cut(s)	63, 505
AfaI	GTAC	3 cut(s)	77, 133, 732
AfiI	CCNNNNNNNGG	2 cut(s)	90, 552
AgsI	TTSAA	1 cut(s)	98
AluBI	AGCT	3 cut(s)	230, 248, 693
AluI	AGCT	3 cut(s)	230, 248, 693
Alw21I	GWGCWC	1 cut(s)	695
Alw26I	GTCTC	1 cut(s)	550
AlwI	GGATC	1 cut(s)	579
Ama87I	CYCGRG	1 cut(s)	641
AoxI	GGCC	4 cut(s)	51, 137, 543, 579
ApeKI	GCWGC	3 cut(s)	35, 238, 622
ApoI	RAATTY	2 cut(s)	63, 505
ArsI	GACNNNNNNTTYG	2 cut(s)	284, 316
AspLEI	GCGC	3 cut(s)	345, 490, 520
AspS9I	GGNCC	4 cut(s)	52, 125, 419, 580
AsuC2I	CCSGG	2 cut(s)	642, 643
AvaI	CYCGRG	1 cut(s)	641
AvaII	GGWCC	2 cut(s)	125, 419
BaeGI	GKGCMC	1 cut(s)	269
BanII	GRGCYC	2 cut(s)	640, 695
BbsI	GAAGAC	1 cut(s)	426
Bbv12I	GWGCWC	1 cut(s)	695
BbvCI	CCTCAGC	1 cut(s)	372
BbvI	GCAGC	3 cut(s)	47, 225, 634
BccI	CCATC	4 cut(s)	393, 400, 643, 653
BceAI	ACGGC	1 cut(s)	528
BcgI	CGANNNNNNTGC	2 cut(s)	614, 648
BclI	TGATCA	1 cut(s)	162
BcnI	CCSGG	2 cut(s)	642, 643
BcoDI	GTCTC	1 cut(s)	550
BfoI	RGCGCY	1 cut(s)	346
BfuAI	ACCTGC	2 cut(s)	377, 481
BisI	GCNGC	5 cut(s)	36, 51, 239, 516, 623
BlsI	GCNGC	5 cut(s)	37, 52, 240, 517, 624
Bme1390I	CCNGG	2 cut(s)	642, 643
Bme18I	GGWCC	2 cut(s)	125, 419
BmeT110I	CYCGRG	1 cut(s)	641
BmgT120I	GGNCC	4 cut(s)	52, 125, 419, 580
BmiI	GGNNCC	2 cut(s)	420, 639
BmrFI	CCNGG	2 cut(s)	642, 643
BmsI	GCATC	1 cut(s)	233
BpiI	GAAGAC	1 cut(s)	426
Bpu10I	CCTNAGC	1 cut(s)	372
BpuMI	CCSGG	2 cut(s)	642, 643
BsaAI	YACGTR	2 cut(s)	131, 734
BsaJI	CCNNGG	3 cut(s)	567, 641, 680
BsaXI	ACNNNNNCTCC	6 cut(s)	248, 278, 311, 330, 341, 360
Bsc4I	CCNNNNNNNGG	2 cut(s)	90, 552
Bse1I	ACTGG	1 cut(s)	105
BseDI	CCNNGG	3 cut(s)	567, 641, 680
BseGI	GGATG	3 cut(s)	311, 404, 654
BseLI	CCNNNNNNNGG	2 cut(s)	90, 552
BseMII	CTCAG	2 cut(s)	386, 491
BseNI	ACTGG	1 cut(s)	105
BseRI	GAGGAG	2 cut(s)	338, 514
BseSI	GKGCMC	1 cut(s)	269
BseXI	GCAGC	3 cut(s)	47, 225, 634
Bsh1236I	CGCG	1 cut(s)	156
Bsh1285I	CGRYCG	1 cut(s)	358
BshFI	GGCC	4 cut(s)	53, 139, 545, 581
BsiEI	CGRYCG	1 cut(s)	358
BsiHKAI	GWGCWC	1 cut(s)	695
BsiHKCI	CYCGRG	1 cut(s)	641
BsiSI	CCGG	1 cut(s)	642
BsiWI	CGTACG	1 cut(s)	730
BslFI	GGGAC	1 cut(s)	432
BslI	CCNNNNNNNGG	2 cut(s)	90, 552
BsmAI	GTCTC	1 cut(s)	550
BsmBI	CGTCTC	1 cut(s)	550
BsmFI	GGGAC	1 cut(s)	432
BsmI	GAATGC	1 cut(s)	207
BsnI	GGCC	4 cut(s)	53, 139, 545, 581
BsoBI	CYCGRG	1 cut(s)	641
Bsp1286I	GDGCHC	3 cut(s)	269, 640, 695
Bsp143I	GATC	5 cut(s)	162, 355, 548, 571, 585
Bsp19I	CCATGG	1 cut(s)	567
BspACI	CCGC	3 cut(s)	50, 442, 515
BspANI	GGCC	4 cut(s)	53, 139, 545, 581
BspCNI	CTCAG	2 cut(s)	385, 490
BspFNI	CGCG	1 cut(s)	156
BspHI	TCATGA	1 cut(s)	169
BspLI	GGNNCC	2 cut(s)	420, 639
BspMI	ACCTGC	2 cut(s)	377, 481
BspPI	GGATC	1 cut(s)	579
BspQI	GCTCTTC	1 cut(s)	683
BsrI	ACTGG	1 cut(s)	105
BssECI	CCNNGG	3 cut(s)	567, 641, 680
BssMI	GATC	5 cut(s)	162, 355, 548, 571, 585
BssT1I	CCWWGG	1 cut(s)	567
Bst4CI	ACNGT	1 cut(s)	561
Bst6I	CTCTTC	1 cut(s)	683
BstAPI	GCANNNNNTGC	1 cut(s)	41
BstBAI	YACGTR	2 cut(s)	131, 734
BstC8I	GCNNGC	2 cut(s)	522, 727
BstDEI	CTNAG	2 cut(s)	372, 477
BstDSI	CCRYGG	1 cut(s)	567
BstF5I	GGATG	3 cut(s)	311, 404, 654
BstFNI	CGCG	1 cut(s)	156
BstH2I	RGCGCY	1 cut(s)	346
BstHHI	GCGC	3 cut(s)	345, 490, 520
BstKTI	GATC	5 cut(s)	165, 358, 551, 574, 588
BstMAI	GTCTC	1 cut(s)	550
BstMBI	GATC	5 cut(s)	162, 355, 548, 571, 585
BstMCI	CGRYCG	1 cut(s)	358
BstMWI	GCNNNNNNNGC	7 cut(s)	41, 50, 273, 328, 460, 521, 619
BstNSI	RCATGY	1 cut(s)	463
BstSCI	CCNGG	2 cut(s)	640, 641
BstSLI	GKGCMC	1 cut(s)	269
BstSNI	TACGTA	1 cut(s)	734
BstUI	CGCG	1 cut(s)	156
BstV1I	GCAGC	3 cut(s)	47, 225, 634
BstV2I	GAAGAC	1 cut(s)	426
BsuRI	GGCC	4 cut(s)	53, 139, 545, 581
BtgI	CCRYGG	1 cut(s)	567
BtgZI	GCGATG	2 cut(s)	171, 628
BtsCI	GGATG	3 cut(s)	311, 404, 654
BtsI	GCAGTG	2 cut(s)	329, 632
BtsIMutI	CAGTG	2 cut(s)	329, 632
BveI	ACCTGC	2 cut(s)	377, 481
Cac8I	GCNNGC	2 cut(s)	522, 727
CciI	TCATGA	1 cut(s)	169
CfoI	GCGC	3 cut(s)	345, 490, 520
Cfr13I	GGNCC	4 cut(s)	52, 125, 419, 580
Cfr9I	CCCGGG	1 cut(s)	641
Csp6I	GTAC	3 cut(s)	76, 132, 731
CviAII	CATG	4 cut(s)	170, 295, 460, 568
CviQI	GTAC	3 cut(s)	76, 132, 731
DdeI	CTNAG	2 cut(s)	372, 477
DpnI	GATC	5 cut(s)	164, 357, 550, 573, 587
DpnII	GATC	5 cut(s)	162, 355, 548, 571, 585
Eam1104I	CTCTTC	1 cut(s)	683
EarI	CTCTTC	1 cut(s)	683
Ecl136II	GAGCTC	1 cut(s)	693
Eco105I	TACGTA	1 cut(s)	734
Eco130I	CCWWGG	1 cut(s)	567
Eco24I	GRGCYC	2 cut(s)	640, 695
Eco47I	GGWCC	2 cut(s)	125, 419
Eco53kI	GAGCTC	1 cut(s)	693
Eco88I	CYCGRG	1 cut(s)	641
EcoICRI	GAGCTC	1 cut(s)	693
EcoO109I	RGGNCCY	1 cut(s)	419
EcoRI	GAATTC	1 cut(s)	505
EcoT14I	CCWWGG	1 cut(s)	567
EcoT38I	GRGCYC	2 cut(s)	640, 695
ErhI	CCWWGG	1 cut(s)	567
Esp3I	CGTCTC	1 cut(s)	550
FaeI	CATG	4 cut(s)	173, 298, 463, 571
FaqI	GGGAC	1 cut(s)	432
FatI	CATG	4 cut(s)	169, 294, 459, 567
FbaI	TGATCA	1 cut(s)	162
Fnu4HI	GCNGC	5 cut(s)	36, 51, 239, 516, 623
FokI	GGATG	3 cut(s)	318, 411, 661
FriOI	GRGCYC	2 cut(s)	640, 695
Fsp4HI	GCNGC	5 cut(s)	36, 51, 239, 516, 623
GlaI	GCGC	3 cut(s)	344, 489, 519
GluI	GCNGC	5 cut(s)	36, 51, 239, 516, 623
HaeII	RGCGCY	1 cut(s)	346
HaeIII	GGCC	4 cut(s)	53, 139, 545, 581
HapII	CCGG	1 cut(s)	642
HhaI	GCGC	3 cut(s)	345, 490, 520
Hin1II	CATG	4 cut(s)	173, 298, 463, 571
Hin6I	GCGC	3 cut(s)	343, 488, 518
HinP1I	GCGC	3 cut(s)	343, 488, 518
HinfI	GANTC	3 cut(s)	113, 257, 700
HpaII	CCGG	1 cut(s)	642
Hpy166II	GTNNAC	1 cut(s)	128
Hpy188I	TCNGA	8 cut(s)	7, 118, 305, 338, 398, 541, 597, 681
Hpy188III	TCNNGA	3 cut(s)	170, 704, 745
Hpy8I	GTNNAC	1 cut(s)	128
Hpy99I	CGWCG	3 cut(s)	356, 381, 514
HpyAV	CCTTC	3 cut(s)	22, 113, 432
HpyCH4III	ACNGT	1 cut(s)	561
HpyCH4IV	ACGT	2 cut(s)	130, 733
HpyCH4V	TGCA	3 cut(s)	44, 179, 622
HpyF10VI	GCNNNNNNNGC	7 cut(s)	41, 50, 273, 328, 460, 521, 619
HpyF3I	CTNAG	2 cut(s)	372, 477
HpySE526I	ACGT	2 cut(s)	130, 733
Hsp92II	CATG	4 cut(s)	173, 298, 463, 571
HspAI	GCGC	3 cut(s)	343, 488, 518
Ksp22I	TGATCA	1 cut(s)	162
Kzo9I	GATC	5 cut(s)	162, 355, 548, 571, 585
LguI	GCTCTTC	1 cut(s)	683
LmnI	GCTCC	5 cut(s)	235, 253, 319, 643, 666
Lsp1109I	GCAGC	3 cut(s)	47, 225, 634
LweI	GCATC	1 cut(s)	233
MaeII	ACGT	2 cut(s)	130, 733
MalI	GATC	5 cut(s)	164, 357, 550, 573, 587
MboI	GATC	5 cut(s)	162, 355, 548, 571, 585
MboII	GAAGA	3 cut(s)	426, 458, 700
MhlI	GDGCHC	3 cut(s)	269, 640, 695
MluCI	AATT	2 cut(s)	63, 505
MlyI	GAGTC	1 cut(s)	266
MmeI	TCCRAC	2 cut(s)	361, 376
MseI	TTAA	1 cut(s)	183
MslI	CAYNNNNRTG	1 cut(s)	174
MspI	CCGG	1 cut(s)	642
MspR9I	CCNGG	2 cut(s)	642, 643
Mva1269I	GAATGC	1 cut(s)	207
MvnI	CGCG	1 cut(s)	156
MwoI	GCNNNNNNNGC	7 cut(s)	41, 50, 273, 328, 460, 521, 619
NciI	CCSGG	2 cut(s)	642, 643
NcoI	CCATGG	1 cut(s)	567
NdeII	GATC	5 cut(s)	162, 355, 548, 571, 585
NlaIII	CATG	4 cut(s)	173, 298, 463, 571
NlaIV	GGNNCC	2 cut(s)	420, 639
NmeAIII	GCCGAG	2 cut(s)	589, 674
NspI	RCATGY	1 cut(s)	463
PagI	TCATGA	1 cut(s)	169
PaqCI	CACCTGC	2 cut(s)	377, 481
PciSI	GCTCTTC	1 cut(s)	683
PctI	GAATGC	1 cut(s)	207
PfeI	GAWTC	2 cut(s)	113, 700
Pfl23II	CGTACG	1 cut(s)	730
PflFI	GACNNNGTC	1 cut(s)	430
PflMI	CCANNNNNTGG	1 cut(s)	552
PkrI	GCNGC	5 cut(s)	37, 52, 240, 517, 624
Ple19I	CGATCG	1 cut(s)	358
PleI	GAGTC	1 cut(s)	265
PpsI	GAGTC	1 cut(s)	265
Ppu21I	YACGTR	2 cut(s)	131, 734
PpuMI	RGGWCCY	1 cut(s)	419
Psp124BI	GAGCTC	1 cut(s)	695
Psp5II	RGGWCCY	1 cut(s)	419
PspLI	CGTACG	1 cut(s)	730
PspN4I	GGNNCC	2 cut(s)	420, 639
PspPI	GGNCC	4 cut(s)	52, 125, 419, 580
PspPPI	RGGWCCY	1 cut(s)	419
PsyI	GACNNNGTC	1 cut(s)	430
PvuI	CGATCG	1 cut(s)	358
RsaI	GTAC	3 cut(s)	77, 133, 732
RsaNI	GTAC	3 cut(s)	76, 132, 731
RseI	CAYNNNNRTG	1 cut(s)	174
SacI	GAGCTC	1 cut(s)	695
SapI	GCTCTTC	1 cut(s)	683
SaqAI	TTAA	1 cut(s)	183
SatI	GCNGC	5 cut(s)	36, 51, 239, 516, 623
Sau3AI	GATC	5 cut(s)	162, 355, 548, 571, 585
Sau96I	GGNCC	4 cut(s)	52, 125, 419, 580
SchI	GAGTC	1 cut(s)	266
ScrFI	CCNGG	2 cut(s)	642, 643
SduI	GDGCHC	3 cut(s)	269, 640, 695
SfaNI	GCATC	1 cut(s)	233
SinI	GGWCC	2 cut(s)	125, 419
SmaI	CCCGGG	1 cut(s)	643
SmiMI	CAYNNNNRTG	1 cut(s)	174
SnaBI	TACGTA	1 cut(s)	734
Sse9I	AATT	2 cut(s)	63, 505
SsiI	CCGC	3 cut(s)	50, 442, 515
SspI	AATATT	1 cut(s)	758
SstI	GAGCTC	1 cut(s)	695
StyD4I	CCNGG	2 cut(s)	640, 641
StyI	CCWWGG	1 cut(s)	567
TaaI	ACNGT	1 cut(s)	561
TaiI	ACGT	2 cut(s)	133, 736
TaqI	TCGA	4 cut(s)	219, 354, 425, 509
TasI	AATT	2 cut(s)	63, 505
TatI	WGTACW	1 cut(s)	75
TauI	GCSGC	2 cut(s)	53, 518
TfiI	GAWTC	2 cut(s)	113, 700
Tru1I	TTAA	1 cut(s)	183
Tru9I	TTAA	1 cut(s)	183
TscAI	CASTG	2 cut(s)	329, 632
TseI	GCWGC	3 cut(s)	35, 238, 622
TspDTI	ATGAA	1 cut(s)	126
TspGWI	ACGGA	1 cut(s)	332
TspMI	CCCGGG	1 cut(s)	641
TspRI	CASTG	2 cut(s)	329, 632
Tth111I	GACNNNGTC	1 cut(s)	430
Van91I	CCANNNNNTGG	1 cut(s)	552
VpaK11BI	GGWCC	2 cut(s)	125, 419
XapI	RAATTY	2 cut(s)	63, 505
XceI	RCATGY	1 cut(s)	463
XcmI	CCANNNNNNNNNTGG	1 cut(s)	574
XmaI	CCCGGG	1 cut(s)	641

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.