Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0001093

Physical Location & Seq

Genomic Coordinates Forward (+)

56173265 .. 56180900

Gene Structure 7636 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG339400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGAACAAACAGAAGAAGATAAACTCCTTCTTCGCCGGCAGCTTCCAGGTCCCGGCGGCCGCCACGTCTTCGCGGTCCACGATTCTCACAGCTGACACGAACGCCTCCGGGCGCGTAGCCTTGGGCGTGTGGGACACGCGCGTGGGCAGCAGGATACCGGCGATGCTAGCCGAGTGGGGCCCGCAGATCGGGAGAATCGTCGGAGTGTCCTCGGGCGGCGTCGACAAGGTTTACGTCAAGGATGACGTTACGGGGGCGCTAATGGTCGGTGACGTGAGGAAAGTGGGAGCTCCGTTACGAAACGTAACGGATGCCGACGTGAGCGATACGTGGTGGGACGCCGATGCGGTTATGGTCTCGGACGAGTGTTTTGATGAGTCGGCCGCCGCGAGTGATTGCGACTCGGCCGTGACTCGGTGTTGTAGCGCGGCAATGTGGAAAGATGTTGGATATAGATTCAGCAGTTGGCAAATCAACATCTCTCCAGACACAAGAACCAACTTTATCATTTTCAAGCTGCTCTCCTTGCAAATATACAAGACTCGGCTTATACGATTCAAGCAATTTACGGAACTCCTCTTTGCGGTTAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

197

Amino Acids

21.5

Weight (kDa)

7.6

Isoelectric Point (pI)

20.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001093)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G25400 AT1G25400 AT1G68440
fragaria_vesca	FvH4_4g27210 FvH4_5g09320 FvH4_5g18320 FvH4_5g36190 FvH4_5g36660 FvH4_6g02080 FvH4_6g18410 FvH4_6g37922 FvH4_6g48101
malus_domestica	MD13G1040500.v1.1 MD16G1041500.v1.1
prunus_persica	Prupe.1G312600_v2.0.a1
pyrus_communis	pycom13g03470 pycom16g03590
rosa_chinensis	RchiOBHm_Chr2g0089781 RchiOBHm_Chr2g0161601 RchiOBHm_Chr4g0435001 RchiOBHm_Chr5g0057351 RchiOBHm_Chr6g0279821 RchiOBHm_Chr7g0227101
rosa_laevigata	RLG00000006630 RLG00000007926
rosa_multiflora	Rmu_co7981798.1_g000001 Rmu_co8240437.1_g000001 Rmu_sc0000400.1_g000034 Rmu_sc0000869.1_g000026 Rmu_sc0001246.1_g000017 Rmu_sc0002430.1_g000001 Rmu_sc0004574.1_g000051 Rmu_sc0009868.1_g000002 Rmu_sc0010765.1_g000001
rosa_roxburghii	Rroxscaffold_1G00019050 Rroxscaffold_2G00088100 Rroxscaffold_5G00376170
rosa_rugosa	Rorug02G0108200 Rorug02G0398300 Rorug02G0435100 Rorug03G0104500 Rorug03G0112000 Rorug03G0209100 Rorug04G0021800 Rorug04G0169800 Rorug04G0281500 Rorug04G0390300 Rorug05G0263200 Rorug05G0281200 Rorug06G0472700 Rorug07G0039700 Rorug07G0207300
rosa_samantha	Rh4AG337000 Rh4BG161500 Rh4BG344900 Rh4CG359600 Rh4DG339400 Rh5DG431200
rosa_wichuraiana	Rw4G029380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	222
AccII	CGCG	6 cut(s)	73, 114, 139, 141, 389, 428
AcoI	YGGCCR	3 cut(s)	57, 381, 405
AcyI	GRCGYC	2 cut(s)	219, 339
AfiI	CCNNNNNNNGG	4 cut(s)	52, 188, 414, 583
AgsI	TTSAA	2 cut(s)	514, 559
AjiI	CACGTC	3 cut(s)	66, 274, 319
AjnI	CCWGG	1 cut(s)	45
AleI	CACNNNNGTG	1 cut(s)	140
AluBI	AGCT	4 cut(s)	42, 92, 290, 517
AluI	AGCT	4 cut(s)	42, 92, 290, 517
Alw21I	GWGCWC	1 cut(s)	292
Alw26I	GTCTC	1 cut(s)	361
Ama87I	CYCGRG	1 cut(s)	211
AoxI	GGCC	4 cut(s)	57, 178, 381, 405
ApaI	GGGCCC	1 cut(s)	182
ApeKI	GCWGC	3 cut(s)	39, 147, 517
ArsI	GACNNNNNNTTYG	2 cut(s)	353, 385
AspLEI	GCGC	4 cut(s)	114, 141, 259, 428
AspS9I	GGNCC	4 cut(s)	49, 75, 178, 179
AsuC2I	CCSGG	2 cut(s)	53, 109
AsuHPI	GGTGA	1 cut(s)	281
AsuNHI	GCTAGC	1 cut(s)	166
AvaI	CYCGRG	1 cut(s)	211
AvaII	GGWCC	2 cut(s)	49, 75
BaeGI	GKGCMC	1 cut(s)	182
BanII	GRGCYC	2 cut(s)	182, 292
BbsI	GAAGAC	1 cut(s)	60
Bbv12I	GWGCWC	1 cut(s)	292
BbvI	GCAGC	3 cut(s)	51, 159, 504
BceAI	ACGGC	1 cut(s)	392
BciT130I	CCWGG	1 cut(s)	47
BciVI	GTATCC	1 cut(s)	147
BcnI	CCSGG	2 cut(s)	53, 109
BcoDI	GTCTC	1 cut(s)	361
BfaI	CTAG	1 cut(s)	167
BfoI	RGCGCY	1 cut(s)	260
BfuI	GTATCC	1 cut(s)	147
BisI	GCNGC	9 cut(s)	40, 57, 60, 148, 217, 384, 387, 429, 518
BlsI	GCNGC	9 cut(s)	41, 58, 61, 149, 218, 385, 388, 430, 519
Bme1390I	CCNGG	3 cut(s)	47, 53, 109
Bme18I	GGWCC	2 cut(s)	49, 75
BmeT110I	CYCGRG	1 cut(s)	211
BmgBI	CACGTC	3 cut(s)	66, 274, 319
BmgT120I	GGNCC	4 cut(s)	49, 75, 178, 179
BmiI	GGNNCC	3 cut(s)	51, 179, 180
BmrFI	CCNGG	3 cut(s)	47, 53, 109
BmsI	GCATC	3 cut(s)	153, 301, 334
BmtI	GCTAGC	1 cut(s)	170
BpiI	GAAGAC	1 cut(s)	60
BpmI	CTGGAG	1 cut(s)	468
BpuMI	CCSGG	2 cut(s)	53, 109
BsaAI	YACGTR	1 cut(s)	330
BsaHI	GRCGYC	2 cut(s)	219, 339
BsaI	GGTCTC	1 cut(s)	361
BsaJI	CCNNGG	2 cut(s)	120, 210
Bsc4I	CCNNNNNNNGG	4 cut(s)	52, 188, 414, 583
Bse118I	RCCGGY	2 cut(s)	35, 157
Bse3DI	GCAATG	1 cut(s)	438
BseBI	CCWGG	1 cut(s)	47
BseDI	CCNNGG	2 cut(s)	120, 210
BseGI	GGATG	2 cut(s)	247, 316
BseLI	CCNNNNNNNGG	4 cut(s)	52, 188, 414, 583
BseMI	GCAATG	1 cut(s)	438
BseRI	GAGGAG	1 cut(s)	566
BseSI	GKGCMC	1 cut(s)	182
BseX3I	CGGCCG	3 cut(s)	57, 381, 405
BseXI	GCAGC	3 cut(s)	51, 159, 504
Bsh1236I	CGCG	6 cut(s)	73, 114, 139, 141, 389, 428
Bsh1285I	CGRYCG	3 cut(s)	60, 384, 408
BshFI	GGCC	4 cut(s)	59, 180, 383, 407
BsiEI	CGRYCG	3 cut(s)	60, 384, 408
BsiHKAI	GWGCWC	1 cut(s)	292
BsiHKCI	CYCGRG	1 cut(s)	211
BsiSI	CCGG	4 cut(s)	36, 53, 108, 158
BslFI	GGGAC	3 cut(s)	35, 146, 350
BslI	CCNNNNNNNGG	4 cut(s)	52, 188, 414, 583
BsmAI	GTCTC	1 cut(s)	361
BsmFI	GGGAC	3 cut(s)	35, 146, 350
BsnI	GGCC	4 cut(s)	59, 180, 383, 407
Bso31I	GGTCTC	1 cut(s)	361
BsoBI	CYCGRG	1 cut(s)	211
Bsp120I	GGGCCC	1 cut(s)	178
Bsp1286I	GDGCHC	2 cut(s)	182, 292
Bsp143I	GATC	1 cut(s)	186
BspANI	GGCC	4 cut(s)	59, 180, 383, 407
BspFNI	CGCG	6 cut(s)	73, 114, 139, 141, 389, 428
BspLI	GGNNCC	3 cut(s)	51, 179, 180
BspOI	GCTAGC	1 cut(s)	170
BspTNI	GGTCTC	1 cut(s)	361
BsrDI	GCAATG	1 cut(s)	438
BsrFI	RCCGGY	2 cut(s)	35, 157
BssAI	RCCGGY	2 cut(s)	35, 157
BssECI	CCNNGG	2 cut(s)	120, 210
BssMI	GATC	1 cut(s)	186
BssNI	GRCGYC	2 cut(s)	219, 339
BssT1I	CCWWGG	1 cut(s)	120
Bst2UI	CCWGG	1 cut(s)	47
BstACI	GRCGYC	2 cut(s)	219, 339
BstBAI	YACGTR	1 cut(s)	330
BstC8I	GCNNGC	3 cut(s)	37, 168, 182
BstF5I	GGATG	2 cut(s)	247, 316
BstFNI	CGCG	6 cut(s)	73, 114, 139, 141, 389, 428
BstH2I	RGCGCY	1 cut(s)	260
BstHHI	GCGC	4 cut(s)	114, 141, 259, 428
BstKTI	GATC	1 cut(s)	189
BstMAI	GTCTC	1 cut(s)	361
BstMBI	GATC	1 cut(s)	186
BstMCI	CGRYCG	3 cut(s)	60, 384, 408
BstMWI	GCNNNNNNNGC	3 cut(s)	147, 167, 526
BstNI	CCWGG	1 cut(s)	47
BstSCI	CCNGG	3 cut(s)	45, 51, 107
BstSLI	GKGCMC	1 cut(s)	182
BstUI	CGCG	6 cut(s)	73, 114, 139, 141, 389, 428
BstV1I	GCAGC	3 cut(s)	51, 159, 504
BstV2I	GAAGAC	1 cut(s)	60
BstZI	CGGCCG	3 cut(s)	57, 381, 405
BsuI	GTATCC	1 cut(s)	147
BsuRI	GGCC	4 cut(s)	59, 180, 383, 407
BtgZI	GCGATG	1 cut(s)	176
BtrI	CACGTC	3 cut(s)	66, 274, 319
BtsCI	GGATG	2 cut(s)	247, 316
Cac8I	GCNNGC	3 cut(s)	37, 168, 182
CciNI	GCGGCCGC	1 cut(s)	57
CfoI	GCGC	4 cut(s)	114, 141, 259, 428
Cfr10I	RCCGGY	2 cut(s)	35, 157
Cfr13I	GGNCC	4 cut(s)	49, 75, 178, 179
CseI	GACGC	2 cut(s)	208, 347
DpnI	GATC	1 cut(s)	188
DpnII	GATC	1 cut(s)	186
EaeI	YGGCCR	3 cut(s)	57, 381, 405
EagI	CGGCCG	3 cut(s)	57, 381, 405
Ecl136II	GAGCTC	1 cut(s)	290
EclXI	CGGCCG	3 cut(s)	57, 381, 405
Eco130I	CCWWGG	1 cut(s)	120
Eco24I	GRGCYC	2 cut(s)	182, 292
Eco31I	GGTCTC	1 cut(s)	361
Eco47I	GGWCC	2 cut(s)	49, 75
Eco52I	CGGCCG	3 cut(s)	57, 381, 405
Eco53kI	GAGCTC	1 cut(s)	290
Eco88I	CYCGRG	1 cut(s)	211
EcoICRI	GAGCTC	1 cut(s)	290
EcoO109I	RGGNCCY	2 cut(s)	49, 178
EcoRII	CCWGG	1 cut(s)	45
EcoT14I	CCWWGG	1 cut(s)	120
EcoT38I	GRGCYC	2 cut(s)	182, 292
ErhI	CCWWGG	1 cut(s)	120
FaiI	YATR	4 cut(s)	353, 453, 535, 551
FaqI	GGGAC	3 cut(s)	35, 146, 350
FauI	CCCGC	1 cut(s)	189
FblI	GTMKAC	1 cut(s)	222
Fnu4HI	GCNGC	9 cut(s)	40, 57, 60, 148, 217, 384, 387, 429, 518
FokI	GGATG	2 cut(s)	254, 323
FriOI	GRGCYC	2 cut(s)	182, 292
Fsp4HI	GCNGC	9 cut(s)	40, 57, 60, 148, 217, 384, 387, 429, 518
FspBI	CTAG	1 cut(s)	167
GlaI	GCGC	4 cut(s)	113, 140, 258, 427
GluI	GCNGC	9 cut(s)	40, 57, 60, 148, 217, 384, 387, 429, 518
GsuI	CTGGAG	1 cut(s)	468
HaeII	RGCGCY	1 cut(s)	260
HaeIII	GGCC	4 cut(s)	59, 180, 383, 407
HapII	CCGG	4 cut(s)	36, 53, 108, 158
HgaI	GACGC	2 cut(s)	208, 347
HhaI	GCGC	4 cut(s)	114, 141, 259, 428
Hin1I	GRCGYC	2 cut(s)	219, 339
Hin6I	GCGC	4 cut(s)	112, 139, 257, 426
HinP1I	GCGC	4 cut(s)	112, 139, 257, 426
HincII	GTYRAC	1 cut(s)	223
HindII	GTYRAC	1 cut(s)	223
HinfI	GANTC	8 cut(s)	82, 195, 377, 401, 412, 456, 541, 555
HpaII	CCGG	4 cut(s)	36, 53, 108, 158
HphI	GGTGA	1 cut(s)	281
Hpy166II	GTNNAC	3 cut(s)	78, 223, 232
Hpy188I	TCNGA	2 cut(s)	203, 361
Hpy188III	TCNNGA	2 cut(s)	190, 485
Hpy8I	GTNNAC	3 cut(s)	78, 223, 232
Hpy99I	CGWCG	3 cut(s)	203, 224, 320
HpyAV	CCTTC	1 cut(s)	37
HpyCH4IV	ACGT	7 cut(s)	65, 234, 246, 273, 303, 318, 329
HpyCH4V	TGCA	1 cut(s)	529
HpyF10VI	GCNNNNNNNGC	3 cut(s)	147, 167, 526
HpySE526I	ACGT	7 cut(s)	65, 234, 246, 273, 303, 318, 329
Hsp92I	GRCGYC	2 cut(s)	219, 339
HspAI	GCGC	4 cut(s)	112, 139, 257, 426
KroI	GCCGGC	1 cut(s)	35
KroNI	GCCGGC	1 cut(s)	37
Kzo9I	GATC	1 cut(s)	186
LmnI	GCTCC	2 cut(s)	287, 295
LpnPI	CCDG	8 cut(s)	32, 49, 59, 66, 121, 136, 171, 498
Lsp1109I	GCAGC	3 cut(s)	51, 159, 504
LweI	GCATC	3 cut(s)	153, 301, 334
MaeI	CTAG	1 cut(s)	167
MaeII	ACGT	7 cut(s)	65, 234, 246, 273, 303, 318, 329
MaeIII	GTNAC	5 cut(s)	247, 269, 294, 304, 409
MalI	GATC	1 cut(s)	188
MboI	GATC	1 cut(s)	186
MboII	GAAGA	4 cut(s)	22, 25, 28, 60
MhlI	GDGCHC	2 cut(s)	182, 292
MluCI	AATT	1 cut(s)	563
MlyI	GAGTC	4 cut(s)	386, 395, 406, 535
MmeI	TCCRAC	2 cut(s)	181, 427
MnlI	CCTC	4 cut(s)	115, 220, 270, 587
MroNI	GCCGGC	1 cut(s)	35
MslI	CAYNNNNRTG	1 cut(s)	140
MspA1I	CMGCKG	1 cut(s)	92
MspI	CCGG	4 cut(s)	36, 53, 108, 158
MspR9I	CCNGG	3 cut(s)	47, 53, 109
MvaI	CCWGG	1 cut(s)	47
MvnI	CGCG	6 cut(s)	73, 114, 139, 141, 389, 428
MwoI	GCNNNNNNNGC	3 cut(s)	147, 167, 526
NaeI	GCCGGC	1 cut(s)	37
NciI	CCSGG	2 cut(s)	53, 109
NdeII	GATC	1 cut(s)	186
NgoMIV	GCCGGC	1 cut(s)	35
NheI	GCTAGC	1 cut(s)	166
NlaIV	GGNNCC	3 cut(s)	51, 179, 180
NmeAIII	GCCGAG	3 cut(s)	196, 383, 523
NmuCI	GTSAC	2 cut(s)	269, 409
NotI	GCGGCCGC	1 cut(s)	57
OliI	CACNNNNGTG	1 cut(s)	140
PcsI	WCGNNNNNNNCGW	4 cut(s)	77, 195, 386, 550
PdiI	GCCGGC	1 cut(s)	37
PfeI	GAWTC	4 cut(s)	82, 195, 456, 555
PkrI	GCNGC	9 cut(s)	41, 58, 61, 149, 218, 385, 388, 430, 519
PleI	GAGTC	4 cut(s)	385, 395, 406, 535
PpsI	GAGTC	4 cut(s)	385, 395, 406, 535
Ppu21I	YACGTR	1 cut(s)	330
PpuMI	RGGWCCY	1 cut(s)	49
Psp124BI	GAGCTC	1 cut(s)	292
Psp5II	RGGWCCY	1 cut(s)	49
Psp6I	CCWGG	1 cut(s)	45
PspGI	CCWGG	1 cut(s)	45
PspN4I	GGNNCC	3 cut(s)	51, 179, 180
PspOMI	GGGCCC	1 cut(s)	178
PspPI	GGNCC	4 cut(s)	49, 75, 178, 179
PspPPI	RGGWCCY	1 cut(s)	49
PvuII	CAGCTG	1 cut(s)	92
RseI	CAYNNNNRTG	1 cut(s)	140
SacI	GAGCTC	1 cut(s)	292
SalI	GTCGAC	1 cut(s)	221
SatI	GCNGC	9 cut(s)	40, 57, 60, 148, 217, 384, 387, 429, 518
Sau3AI	GATC	1 cut(s)	186
Sau96I	GGNCC	4 cut(s)	49, 75, 178, 179
SchI	GAGTC	4 cut(s)	386, 395, 406, 535
ScrFI	CCNGG	3 cut(s)	47, 53, 109
SduI	GDGCHC	2 cut(s)	182, 292
SfaNI	GCATC	3 cut(s)	153, 301, 334
SinI	GGWCC	2 cut(s)	49, 75
SmiMI	CAYNNNNRTG	1 cut(s)	140
Sse9I	AATT	1 cut(s)	563
SspMI	CTAG	1 cut(s)	167
SstI	GAGCTC	1 cut(s)	292
StyD4I	CCNGG	3 cut(s)	45, 51, 107
StyI	CCWWGG	1 cut(s)	120
TaiI	ACGT	7 cut(s)	68, 237, 249, 276, 306, 321, 332
TaqI	TCGA	1 cut(s)	222
TasI	AATT	1 cut(s)	563
TauI	GCSGC	6 cut(s)	59, 62, 219, 386, 389, 431
TfiI	GAWTC	4 cut(s)	82, 195, 456, 555
TseFI	GTSAC	2 cut(s)	269, 409
TseI	GCWGC	3 cut(s)	39, 147, 517
Tsp45I	GTSAC	2 cut(s)	269, 409
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	3 cut(s)	282, 323, 584
VpaK11BI	GGWCC	2 cut(s)	49, 75
XmiI	GTMKAC	1 cut(s)	222
XspI	CTAG	1 cut(s)	167

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.