FvH4_6g48101

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0001093
Physical Location & Seq
Forward (+)
36283903 .. 36287374
3472 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g48101.t1

Sequence Viewer

Length: 1080 bp
ATGCAGTCGCTGCCTGCTTCATTTGGAACTCTATTTATGAGGCAGGTAATGCTGGACCCTTCTCCCTTCTTACCCAAAATTCGCTACCCGTTATTCAAGTACTGCAGTGAGGCTTCTATGGCATCATCATCACCATTTAACAAGGTCCAGATATTTCATGGTCATGGAAAACCCTACTTACTACGTCGAACTTGGAAGGCAAAGAAAGGGTACTGGTACAAAGTGAAGATAGAGTTGCAGCATCAGTTTATACAGTTGATGCTAAACCACGAATCGATCCCACCCTGGACAACAATGGCGACAGGTGCTCTCTTCGTCGTTCATATTTATTATGTTCTGGCAACAGAAGCTAAATATGGGCATGAGGAATTGAGGATGGCCACGGCTTTGAGGAGCCTTCATGATACTAGACCGGTCGGTGAGGCCGGACGGGCTGTTTTGGTATTGTGGAGGTGGCAGGGCCTTCCGGTCGGTTTTGTGACGGAGGATACGAACTGCGGCTTCACTCTGCAGGGAGGGGCTGTTGTATCTCAGGGAAGACGGTGTCCAGGGTCTGGCTGCGGCATGGCGTGGGATCCCCGGAGTCTTGAACTGATGTCTTGTTGCGAGGTTATGGGTGGCGGTATAAGTCCCTCCTCTTTTGGGCGAGGGTTTGAGTGTCGTTTTCTGGTCAATGTGCTACTTCGGTGGCGTTATTCCTGGGGACTATCGGCTTTAATATCGGTGTGGTCTAGGTGGCAACATGAGGGTGGATTACCTTTGCACGTGGTCTGGTGGTATTTGGACACGGTGTGGAAGAAGGAGAATTTGCTCGTTTTAGTGTTGGCAGCAAGGTTGTATCGTTACTCTCAGGACTGTGTAGCTCTTTTTGAGCGTGAAATTGGGTTAGGGGTTGGGCCCACTTGGCTCATGGATGTTGCTATTGGCGACGGACCCGTAACTACGGATCTTTTTGGGAATGTGTGTCGTGGTGTAGCACCAAATTTGGTGGTGGTAGAAGACCAGTCATGCATATCATTCTGCAATATCTGGTGCTCTTTAGTAAATGATGATGATATTATTTCTACAAAGCTAGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

360

Amino Acids

40.46

Weight (kDa)

8.56

Isoelectric Point (pI)

48.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 34
AccB7I CCANNNNNTGG 1 cut(s) 554
AciI CCGC 3 cut(s) 498, 561, 621
AclWI GGATC 4 cut(s) 271, 569, 582, 954
AcoI YGGCCR 1 cut(s) 378
AcsI RAATTY 3 cut(s) 78, 805, 982
AcvI CACGTG 1 cut(s) 766
AdeI CACNNNGTG 1 cut(s) 792
AfaI GTAC 3 cut(s) 101, 212, 218
AfiI CCNNNNNNNGG 2 cut(s) 554, 642
AgeI ACCGGT 1 cut(s) 412
AgsI TTSAA 2 cut(s) 97, 590
AjnI CCWGG 3 cut(s) 284, 547, 698
AluBI AGCT 4 cut(s) 350, 863, 1072, 1076
AluI AGCT 4 cut(s) 350, 863, 1072, 1076
Alw21I GWGCWC 2 cut(s) 310, 1037
AlwI GGATC 4 cut(s) 271, 569, 582, 954
AlwNI CAGNNNCTG 2 cut(s) 10, 554
AoxI GGCC 4 cut(s) 378, 423, 460, 896
ApaI GGGCCC 1 cut(s) 900
ApeKI GCWGC 4 cut(s) 10, 238, 558, 827
ApoI RAATTY 3 cut(s) 78, 805, 982
AsiGI ACCGGT 1 cut(s) 412
AspS9I GGNCC 6 cut(s) 55, 145, 460, 896, 897, 932
AsuC2I CCSGG 1 cut(s) 580
AsuHPI GGTGA 2 cut(s) 123, 431
AsuNHI GCTAGC 1 cut(s) 1072
AvaII GGWCC 3 cut(s) 55, 145, 932
BaeGI GKGCMC 1 cut(s) 900
BalI TGGCCA 1 cut(s) 380
BamHI GGATCC 1 cut(s) 574
BanII GRGCYC 1 cut(s) 900
BbrPI CACGTG 1 cut(s) 766
BbsI GAAGAC 2 cut(s) 544, 1005
Bbv12I GWGCWC 2 cut(s) 310, 1037
BbvI GCAGC 3 cut(s) 250, 545, 839
BccI CCATC 1 cut(s) 370
BceAI ACGGC 1 cut(s) 399
BciT130I CCWGG 3 cut(s) 286, 549, 700
BciVI GTATCC 1 cut(s) 481
BcnI CCSGG 1 cut(s) 580
BfaI CTAG 3 cut(s) 408, 732, 1073
BfmI CTRYAG 2 cut(s) 103, 509
BfuAI ACCTGC 1 cut(s) 34
BfuI GTATCC 1 cut(s) 481
BglI GCCNNNNNGGC 2 cut(s) 431, 904
BisI GCNGC 6 cut(s) 11, 239, 499, 559, 562, 828
BlsI GCNGC 6 cut(s) 12, 240, 500, 560, 563, 829
BmcAI AGTACT 1 cut(s) 101
Bme1390I CCNGG 4 cut(s) 286, 549, 580, 700
Bme18I GGWCC 3 cut(s) 55, 145, 932
BmgT120I GGNCC 6 cut(s) 55, 145, 460, 896, 897, 932
BmiI GGNNCC 5 cut(s) 57, 395, 576, 898, 934
BmrFI CCNGG 4 cut(s) 286, 549, 580, 700
BmsI GCATC 3 cut(s) 131, 249, 250
BmtI GCTAGC 1 cut(s) 1076
BpiI GAAGAC 2 cut(s) 544, 1005
BpuMI CCSGG 1 cut(s) 580
Bsa29I ATCGAT 1 cut(s) 275
BsaAI YACGTR 1 cut(s) 766
BsaJI CCNNGG 5 cut(s) 284, 381, 548, 578, 699
BsaWI WCCGGW 2 cut(s) 412, 466
BsaXI ACNNNNNCTCC 2 cut(s) 507, 537
Bsc4I CCNNNNNNNGG 2 cut(s) 554, 642
Bse118I RCCGGY 1 cut(s) 412
Bse1I ACTGG 2 cut(s) 218, 1003
BseBI CCWGG 3 cut(s) 286, 549, 700
BseCI ATCGAT 1 cut(s) 275
BseDI CCNNGG 5 cut(s) 284, 381, 548, 578, 699
BseGI GGATG 2 cut(s) 381, 919
BseLI CCNNNNNNNGG 2 cut(s) 554, 642
BseMII CTCAG 2 cut(s) 545, 863
BseNI ACTGG 2 cut(s) 218, 1003
BseRI GAGGAG 2 cut(s) 406, 625
BseSI GKGCMC 1 cut(s) 900
BseXI GCAGC 3 cut(s) 250, 545, 839
Bsh1285I CGRYCG 2 cut(s) 417, 471
BshFI GGCC 4 cut(s) 380, 425, 462, 898
BshTI ACCGGT 1 cut(s) 412
BshVI ATCGAT 1 cut(s) 275
BsiEI CGRYCG 2 cut(s) 417, 471
BsiHKAI GWGCWC 2 cut(s) 310, 1037
BsiSI CCGG 4 cut(s) 413, 426, 467, 580
BslFI GGGAC 2 cut(s) 615, 717
BslI CCNNNNNNNGG 2 cut(s) 554, 642
BsmFI GGGAC 2 cut(s) 615, 717
BsnI GGCC 4 cut(s) 380, 425, 462, 898
Bsp120I GGGCCC 1 cut(s) 896
Bsp1286I GDGCHC 3 cut(s) 310, 900, 1037
Bsp143I GATC 3 cut(s) 276, 574, 946
BspACI CCGC 3 cut(s) 498, 561, 621
BspANI GGCC 4 cut(s) 380, 425, 462, 898
BspCNI CTCAG 2 cut(s) 544, 862
BspDI ATCGAT 1 cut(s) 275
BspHI TCATGA 1 cut(s) 400
BspLI GGNNCC 5 cut(s) 57, 395, 576, 898, 934
BspMAI CTGCAG 2 cut(s) 107, 513
BspMI ACCTGC 1 cut(s) 34
BspOI GCTAGC 1 cut(s) 1076
BspPI GGATC 4 cut(s) 271, 569, 582, 954
BsrFI RCCGGY 1 cut(s) 412
BsrI ACTGG 2 cut(s) 218, 1003
BssAI RCCGGY 1 cut(s) 412
BssECI CCNNGG 5 cut(s) 284, 381, 548, 578, 699
BssMI GATC 3 cut(s) 276, 574, 946
Bst2UI CCWGG 3 cut(s) 286, 549, 700
Bst4CI ACNGT 4 cut(s) 255, 543, 790, 857
Bst6I CTCTTC 1 cut(s) 317
BstAPI GCANNNNNTGC 2 cut(s) 10, 49
BstBAI YACGTR 1 cut(s) 766
BstC8I GCNNGC 2 cut(s) 15, 1074
BstDEI CTNAG 2 cut(s) 531, 849
BstDSI CCRYGG 1 cut(s) 381
BstF5I GGATG 2 cut(s) 381, 919
BstKTI GATC 3 cut(s) 279, 577, 949
BstMBI GATC 3 cut(s) 276, 574, 946
BstMCI CGRYCG 2 cut(s) 417, 471
BstMWI GCNNNNNNNGC 7 cut(s) 10, 49, 119, 305, 347, 431, 904
BstNI CCWGG 3 cut(s) 286, 549, 700
BstSCI CCNGG 4 cut(s) 284, 547, 578, 698
BstSFI CTRYAG 2 cut(s) 103, 509
BstSLI GKGCMC 1 cut(s) 900
BstV1I GCAGC 3 cut(s) 250, 545, 839
BstV2I GAAGAC 2 cut(s) 544, 1005
BstX2I RGATCY 2 cut(s) 574, 946
BstYI RGATCY 2 cut(s) 574, 946
Bsu15I ATCGAT 1 cut(s) 275
BsuI GTATCC 1 cut(s) 481
BsuRI GGCC 4 cut(s) 380, 425, 462, 898
BsuTUI ATCGAT 1 cut(s) 275
BtgI CCRYGG 1 cut(s) 381
BtsCI GGATG 2 cut(s) 381, 919
BtsI GCAGTG 1 cut(s) 112
BtsIMutI CAGTG 1 cut(s) 112
BveI ACCTGC 1 cut(s) 34
Cac8I GCNNGC 2 cut(s) 15, 1074
CaiI CAGNNNCTG 2 cut(s) 10, 554
CciI TCATGA 1 cut(s) 400
Cfr10I RCCGGY 1 cut(s) 412
Cfr13I GGNCC 6 cut(s) 55, 145, 460, 896, 897, 932
ClaI ATCGAT 1 cut(s) 275
Csp6I GTAC 3 cut(s) 100, 211, 217
CspAI ACCGGT 1 cut(s) 412
CspCI CAANNNNNGTGG 2 cut(s) 969, 1004
CviAII CATG 8 cut(s) 158, 164, 362, 401, 565, 743, 910, 1008
CviQI GTAC 3 cut(s) 100, 211, 217
DdeI CTNAG 2 cut(s) 531, 849
DpnI GATC 3 cut(s) 278, 576, 948
DpnII GATC 3 cut(s) 276, 574, 946
DraIII CACNNNGTG 1 cut(s) 792
EaeI YGGCCR 1 cut(s) 378
Eam1104I CTCTTC 1 cut(s) 317
EarI CTCTTC 1 cut(s) 317
Eco24I GRGCYC 1 cut(s) 900
Eco47I GGWCC 3 cut(s) 55, 145, 932
Eco72I CACGTG 1 cut(s) 766
EcoO109I RGGNCCY 1 cut(s) 460
EcoRII CCWGG 3 cut(s) 284, 547, 698
EcoT22I ATGCAT 1 cut(s) 1013
EcoT38I GRGCYC 1 cut(s) 900
FaeI CATG 8 cut(s) 161, 167, 365, 404, 568, 746, 913, 1011
FaqI GGGAC 2 cut(s) 615, 717
FatI CATG 8 cut(s) 157, 163, 361, 400, 564, 742, 909, 1007
Fnu4HI GCNGC 6 cut(s) 11, 239, 499, 559, 562, 828
FokI GGATG 2 cut(s) 388, 926
FriOI GRGCYC 1 cut(s) 900
Fsp4HI GCNGC 6 cut(s) 11, 239, 499, 559, 562, 828
FspBI CTAG 3 cut(s) 408, 732, 1073
GluI GCNGC 6 cut(s) 11, 239, 499, 559, 562, 828
HaeIII GGCC 4 cut(s) 380, 425, 462, 898
HapII CCGG 4 cut(s) 413, 426, 467, 580
Hin1II CATG 8 cut(s) 161, 167, 365, 404, 568, 746, 913, 1011
HinfI GANTC 2 cut(s) 272, 583
HpaII CCGG 4 cut(s) 413, 426, 467, 580
HphI GGTGA 2 cut(s) 123, 431
Hpy188III TCNNGA 4 cut(s) 148, 401, 587, 851
Hpy99I CGWCG 3 cut(s) 189, 320, 932
HpyAV CCTTC 6 cut(s) 69, 76, 190, 407, 473, 793
HpyCH4III ACNGT 4 cut(s) 255, 543, 790, 857
HpyCH4IV ACGT 2 cut(s) 184, 765
HpyCH4V TGCA 7 cut(s) 4, 105, 238, 511, 763, 1011, 1023
HpyF10VI GCNNNNNNNGC 7 cut(s) 10, 49, 119, 305, 347, 431, 904
HpyF3I CTNAG 2 cut(s) 531, 849
HpySE526I ACGT 2 cut(s) 184, 765
Hsp92II CATG 8 cut(s) 161, 167, 365, 404, 568, 746, 913, 1011
Kzo9I GATC 3 cut(s) 276, 574, 946
LmnI GCTCC 1 cut(s) 393
Lsp1109I GCAGC 3 cut(s) 250, 545, 839
LweI GCATC 3 cut(s) 131, 249, 250
MaeI CTAG 3 cut(s) 408, 732, 1073
MaeII ACGT 2 cut(s) 184, 765
MaeIII GTNAC 3 cut(s) 478, 842, 937
MalI GATC 3 cut(s) 278, 576, 948
MboI GATC 3 cut(s) 276, 574, 946
MboII GAAGA 5 cut(s) 238, 304, 549, 808, 1010
MflI RGATCY 2 cut(s) 574, 946
MhlI GDGCHC 3 cut(s) 310, 900, 1037
MlsI TGGCCA 1 cut(s) 380
MluCI AATT 5 cut(s) 78, 368, 805, 879, 982
MluNI TGGCCA 1 cut(s) 380
MlyI GAGTC 1 cut(s) 592
Mox20I TGGCCA 1 cut(s) 380
Mph1103I ATGCAT 1 cut(s) 1013
MscI TGGCCA 1 cut(s) 380
MseI TTAA 3 cut(s) 138, 716, 1078
MslI CAYNNNNRTG 2 cut(s) 162, 747
Msp20I TGGCCA 1 cut(s) 380
MspI CCGG 4 cut(s) 413, 426, 467, 580
MspR9I CCNGG 4 cut(s) 286, 549, 580, 700
MvaI CCWGG 3 cut(s) 286, 549, 700
MwoI GCNNNNNNNGC 7 cut(s) 10, 49, 119, 305, 347, 431, 904
NciI CCSGG 1 cut(s) 580
NdeII GATC 3 cut(s) 276, 574, 946
NheI GCTAGC 1 cut(s) 1072
NlaIII CATG 8 cut(s) 161, 167, 365, 404, 568, 746, 913, 1011
NlaIV GGNNCC 5 cut(s) 57, 395, 576, 898, 934
NmuCI GTSAC 1 cut(s) 478
NsiI ATGCAT 1 cut(s) 1013
PagI TCATGA 1 cut(s) 400
PcsI WCGNNNNNNNCGW 1 cut(s) 488
PfeI GAWTC 1 cut(s) 272
PflFI GACNNNGTC 1 cut(s) 543
PflMI CCANNNNNTGG 1 cut(s) 554
PinAI ACCGGT 1 cut(s) 412
PkrI GCNGC 6 cut(s) 12, 240, 500, 560, 563, 829
PleI GAGTC 1 cut(s) 591
PmaCI CACGTG 1 cut(s) 766
PmlI CACGTG 1 cut(s) 766
PpsI GAGTC 1 cut(s) 591
Ppu21I YACGTR 1 cut(s) 766
Psp6I CCWGG 3 cut(s) 284, 547, 698
PspCI CACGTG 1 cut(s) 766
PspGI CCWGG 3 cut(s) 284, 547, 698
PspN4I GGNNCC 5 cut(s) 57, 395, 576, 898, 934
PspOMI GGGCCC 1 cut(s) 896
PspPI GGNCC 6 cut(s) 55, 145, 460, 896, 897, 932
PstI CTGCAG 2 cut(s) 107, 513
PstNI CAGNNNCTG 2 cut(s) 10, 554
PsuI RGATCY 2 cut(s) 574, 946
PsyI GACNNNGTC 1 cut(s) 543
RsaI GTAC 3 cut(s) 101, 212, 218
RsaNI GTAC 3 cut(s) 100, 211, 217
RseI CAYNNNNRTG 2 cut(s) 162, 747
SaqAI TTAA 3 cut(s) 138, 716, 1078
SatI GCNGC 6 cut(s) 11, 239, 499, 559, 562, 828
Sau3AI GATC 3 cut(s) 276, 574, 946
Sau96I GGNCC 6 cut(s) 55, 145, 460, 896, 897, 932
ScaI AGTACT 1 cut(s) 101
SchI GAGTC 1 cut(s) 592
ScrFI CCNGG 4 cut(s) 286, 549, 580, 700
SduI GDGCHC 3 cut(s) 310, 900, 1037
SfaNI GCATC 3 cut(s) 131, 249, 250
SfcI CTRYAG 2 cut(s) 103, 509
SinI GGWCC 3 cut(s) 55, 145, 932
SmiMI CAYNNNNRTG 2 cut(s) 162, 747
Sse9I AATT 5 cut(s) 78, 368, 805, 879, 982
SsiI CCGC 3 cut(s) 498, 561, 621
SspMI CTAG 3 cut(s) 408, 732, 1073
StyD4I CCNGG 4 cut(s) 284, 547, 578, 698
TaaI ACNGT 4 cut(s) 255, 543, 790, 857
TaiI ACGT 2 cut(s) 187, 768
TaqI TCGA 2 cut(s) 187, 275
TasI AATT 5 cut(s) 78, 368, 805, 879, 982
TatI WGTACW 1 cut(s) 99
TauI GCSGC 2 cut(s) 501, 564
TfiI GAWTC 1 cut(s) 272
Tru1I TTAA 3 cut(s) 138, 716, 1078
Tru9I TTAA 3 cut(s) 138, 716, 1078
TscAI CASTG 1 cut(s) 112
TseFI GTSAC 1 cut(s) 478
TseI GCWGC 4 cut(s) 10, 238, 558, 827
Tsp45I GTSAC 1 cut(s) 478
TspDTI ATGAA 4 cut(s) 9, 146, 311, 389
TspGWI ACGGA 3 cut(s) 497, 945, 959
TspRI CASTG 1 cut(s) 112
Tth111I GACNNNGTC 1 cut(s) 543
Van91I CCANNNNNTGG 1 cut(s) 554
VpaK11BI GGWCC 3 cut(s) 55, 145, 932
XapI RAATTY 3 cut(s) 78, 805, 982
XcmI CCANNNNNNNNNTGG 2 cut(s) 155, 907
XspI CTAG 3 cut(s) 408, 732, 1073
ZrmI AGTACT 1 cut(s) 101
Zsp2I ATGCAT 1 cut(s) 1013
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.