Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001093

Physical Location & Seq

Genomic Coordinates Forward (+)

43029153 .. 43034337

Gene Structure 5185 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ25093

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

ATGACAATTTTACCCTTCTACCTAAGCCCACTCTCATTTTTACATCGATCACAAATTGTGATTCACAATTCACAAATCCATCTACTTCTCTCTCTCCCCCCTCGATCACAATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCATCCCTCGATCTCTGCCTCCGATTCCGGCGACCACCAGCACGACGCTCTCTCGGTCCCTCTCTCTCCTCGATTACAGTCTCACAGATCACATCTTGGTCTGCACCTCCAATTCCGGAGACGATCGTCGCGGTGCTCTCTATCTCTCACATTCATAGATCAAGGATCTTCATGGCGCCGGCGTGATGCTTTTGTTGTTGGGTTTGGAGGTTTTGGTCATGTTGTGGAGCCATCTATATGGTGTTACTCCTGGGAACAATATGTTACAATTTCGATGTTGTTTGGTTATCAACGGAAAGGTGGATTTCCCTTGCACGTGGTTTGGCAATTTATGGACACAGCATGGAAGAGGGTGGAGTGGTTCGTCTGGATGTTGGTGACGAGGTCGTATCGTGACACTCGGGATTGGTTATCGTTCTTTGTAGCCTGGGGTGATAGGCGTAAAAATTGGTTAGGGGTTGGACCTTTTCGGTTCATGGATGTTACTATTAATGACGGACCCATAACTAGGGATCTTGGTAGGAATATGTGCCGTGATGTTGATACCACAACCGGTATATATGTTGATTTGGCTGCTATATTTGTGGGGAAAAACAATGCTTTTAGATCACATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

266

Amino Acids

30.51

Weight (kDa)

10.01

Isoelectric Point (pI)

50.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001093)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G25400 AT1G25400 AT1G68440
fragaria_vesca	FvH4_4g27210 FvH4_5g09320 FvH4_5g18320 FvH4_5g36190 FvH4_5g36660 FvH4_6g02080 FvH4_6g18410 FvH4_6g37922 FvH4_6g48101
malus_domestica	MD13G1040500.v1.1 MD16G1041500.v1.1
prunus_persica	Prupe.1G312600_v2.0.a1
pyrus_communis	pycom13g03470 pycom16g03590
rosa_chinensis	RchiOBHm_Chr2g0089781 RchiOBHm_Chr2g0161601 RchiOBHm_Chr4g0435001 RchiOBHm_Chr5g0057351 RchiOBHm_Chr6g0279821 RchiOBHm_Chr7g0227101
rosa_laevigata	RLG00000006630 RLG00000007926
rosa_multiflora	Rmu_co7981798.1_g000001 Rmu_co8240437.1_g000001 Rmu_sc0000400.1_g000034 Rmu_sc0000869.1_g000026 Rmu_sc0001246.1_g000017 Rmu_sc0002430.1_g000001 Rmu_sc0004574.1_g000051 Rmu_sc0009868.1_g000002 Rmu_sc0010765.1_g000001
rosa_roxburghii	Rroxscaffold_1G00019050 Rroxscaffold_2G00088100 Rroxscaffold_5G00376170
rosa_rugosa	Rorug02G0108200 Rorug02G0398300 Rorug02G0435100 Rorug03G0104500 Rorug03G0112000 Rorug03G0209100 Rorug04G0021800 Rorug04G0169800 Rorug04G0281500 Rorug04G0390300 Rorug05G0263200 Rorug05G0281200 Rorug06G0472700 Rorug07G0039700 Rorug07G0207300
rosa_samantha	Rh4AG337000 Rh4BG161500 Rh4BG344900 Rh4CG359600 Rh4DG339400 Rh5DG431200
rosa_wichuraiana	Rw4G029380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	360
AccII	CGCG	1 cut(s)	316
AccIII	TCCGGA	1 cut(s)	300
AciI	CCGC	1 cut(s)	316
AclWI	GGATC	2 cut(s)	358, 705
AcvI	CACGTG	1 cut(s)	502
AcyI	GRCGYC	1 cut(s)	361
AfiI	CCNNNNNNNGG	1 cut(s)	693
AgeI	ACCGGT	1 cut(s)	737
AjnI	CCWGG	2 cut(s)	434, 611
Alw21I	GWGCWC	1 cut(s)	323
Alw26I	GTCTC	2 cut(s)	270, 298
AlwI	GGATC	2 cut(s)	358, 705
Ama87I	CYCGRG	1 cut(s)	585
Aor13HI	TCCGGA	1 cut(s)	300
ApeKI	GCWGC	1 cut(s)	758
AseI	ATTAAT	1 cut(s)	675
AsiGI	ACCGGT	1 cut(s)	737
AspLEI	GCGC	1 cut(s)	363
AspS9I	GGNCC	3 cut(s)	241, 647, 683
AsuHPI	GGTGA	2 cut(s)	574, 629
AvaI	CYCGRG	1 cut(s)	585
AvaII	GGWCC	3 cut(s)	241, 647, 683
BanI	GGYRCC	1 cut(s)	360
BbrPI	CACGTG	1 cut(s)	502
Bbv12I	GWGCWC	1 cut(s)	323
BbvI	GCAGC	1 cut(s)	745
BccI	CCATC	2 cut(s)	87, 424
BceAI	ACGGC	1 cut(s)	702
BciT130I	CCWGG	2 cut(s)	436, 613
BcoDI	GTCTC	2 cut(s)	270, 298
BfaI	CTAG	1 cut(s)	693
BfoI	RGCGCY	1 cut(s)	364
BisI	GCNGC	1 cut(s)	759
BlsI	GCNGC	1 cut(s)	760
Bme1390I	CCNGG	2 cut(s)	436, 613
Bme18I	GGWCC	3 cut(s)	241, 647, 683
BmeT110I	CYCGRG	1 cut(s)	585
BmgT120I	GGNCC	3 cut(s)	241, 647, 683
BmiI	GGNNCC	4 cut(s)	243, 362, 414, 685
BmrFI	CCNGG	2 cut(s)	436, 613
BmsI	GCATC	1 cut(s)	361
BoxI	GACNNNNGTC	1 cut(s)	310
Bpu10I	CCTNAGC	1 cut(s)	23
Bsa29I	ATCGAT	1 cut(s)	46
BsaAI	YACGTR	1 cut(s)	502
BsaBI	GATNNNNATC	1 cut(s)	109
BsaHI	GRCGYC	1 cut(s)	361
BsaJI	CCNNGG	2 cut(s)	435, 612
BsaWI	WCCGGW	2 cut(s)	300, 737
Bsc4I	CCNNNNNNNGG	1 cut(s)	693
Bse118I	RCCGGY	2 cut(s)	363, 737
Bse8I	GATNNNNATC	1 cut(s)	109
BseAI	TCCGGA	1 cut(s)	300
BseBI	CCWGG	2 cut(s)	436, 613
BseCI	ATCGAT	1 cut(s)	46
BseDI	CCNNGG	2 cut(s)	435, 612
BseGI	GGATG	3 cut(s)	187, 561, 670
BseJI	GATNNNNATC	1 cut(s)	109
BseLI	CCNNNNNNNGG	1 cut(s)	693
BseRI	GAGGAG	1 cut(s)	243
BseXI	GCAGC	1 cut(s)	745
BsgI	GTGCAG	1 cut(s)	272
Bsh1236I	CGCG	1 cut(s)	316
Bsh1285I	CGRYCG	1 cut(s)	311
BshNI	GGYRCC	1 cut(s)	360
BshTI	ACCGGT	1 cut(s)	737
BshVI	ATCGAT	1 cut(s)	46
BsiEI	CGRYCG	1 cut(s)	311
BsiHKAI	GWGCWC	1 cut(s)	323
BsiHKCI	CYCGRG	1 cut(s)	585
BsiSI	CCGG	4 cut(s)	213, 301, 364, 738
BslFI	GGGAC	1 cut(s)	227
BslI	CCNNNNNNNGG	1 cut(s)	693
BsmAI	GTCTC	2 cut(s)	270, 298
BsmBI	CGTCTC	1 cut(s)	298
BsmFI	GGGAC	1 cut(s)	227
BsoBI	CYCGRG	1 cut(s)	585
Bsp1286I	GDGCHC	1 cut(s)	323
Bsp13I	TCCGGA	1 cut(s)	300
Bsp143I	GATC	9 cut(s)	47, 104, 195, 272, 308, 343, 350, 697, 791
BspACI	CCGC	1 cut(s)	316
BspDI	ATCGAT	1 cut(s)	46
BspEI	TCCGGA	1 cut(s)	300
BspFNI	CGCG	1 cut(s)	316
BspLI	GGNNCC	4 cut(s)	243, 362, 414, 685
BspPI	GGATC	2 cut(s)	358, 705
BspT107I	GGYRCC	1 cut(s)	360
BsrFI	RCCGGY	2 cut(s)	363, 737
BssAI	RCCGGY	2 cut(s)	363, 737
BssECI	CCNNGG	2 cut(s)	435, 612
BssMI	GATC	9 cut(s)	47, 104, 195, 272, 308, 343, 350, 697, 791
BssNI	GRCGYC	1 cut(s)	361
Bst2UI	CCWGG	2 cut(s)	436, 613
Bst4CI	ACNGT	1 cut(s)	264
Bst6I	CTCTTC	1 cut(s)	527
BstACI	GRCGYC	1 cut(s)	361
BstBAI	YACGTR	1 cut(s)	502
BstC8I	GCNNGC	1 cut(s)	365
BstDEI	CTNAG	1 cut(s)	23
BstF5I	GGATG	3 cut(s)	187, 561, 670
BstFNI	CGCG	1 cut(s)	316
BstH2I	RGCGCY	1 cut(s)	364
BstHHI	GCGC	1 cut(s)	363
BstKTI	GATC	9 cut(s)	50, 107, 198, 275, 311, 346, 353, 700, 794
BstMAI	GTCTC	2 cut(s)	270, 298
BstMBI	GATC	9 cut(s)	47, 104, 195, 272, 308, 343, 350, 697, 791
BstMCI	CGRYCG	1 cut(s)	311
BstNI	CCWGG	2 cut(s)	436, 613
BstPAI	GACNNNNGTC	1 cut(s)	310
BstSCI	CCNGG	2 cut(s)	434, 611
BstUI	CGCG	1 cut(s)	316
BstV1I	GCAGC	1 cut(s)	745
BstX2I	RGATCY	2 cut(s)	350, 697
BstXI	CCANNNNNNTGG	1 cut(s)	423
BstYI	RGATCY	2 cut(s)	350, 697
Bsu15I	ATCGAT	1 cut(s)	46
BsuTUI	ATCGAT	1 cut(s)	46
BtsCI	GGATG	3 cut(s)	187, 561, 670
Cac8I	GCNNGC	1 cut(s)	365
CfoI	GCGC	1 cut(s)	363
Cfr10I	RCCGGY	2 cut(s)	363, 737
Cfr13I	GGNCC	3 cut(s)	241, 647, 683
ClaI	ATCGAT	1 cut(s)	46
CseI	GACGC	1 cut(s)	239
CspAI	ACCGGT	1 cut(s)	737
CviAII	CATG	4 cut(s)	357, 404, 528, 661
CviJI	RGCY	4 cut(s)	27, 415, 611, 758
CviKI_1	RGCY	4 cut(s)	27, 415, 611, 758
DdeI	CTNAG	1 cut(s)	23
DinI	GGCGCC	1 cut(s)	362
DpnI	GATC	9 cut(s)	49, 106, 197, 274, 310, 345, 352, 699, 793
DpnII	GATC	9 cut(s)	47, 104, 195, 272, 308, 343, 350, 697, 791
Eam1104I	CTCTTC	1 cut(s)	527
EarI	CTCTTC	1 cut(s)	527
Eco47I	GGWCC	3 cut(s)	241, 647, 683
Eco72I	CACGTG	1 cut(s)	502
Eco88I	CYCGRG	1 cut(s)	585
EcoRII	CCWGG	2 cut(s)	434, 611
EgeI	GGCGCC	1 cut(s)	362
EheI	GGCGCC	1 cut(s)	362
Esp3I	CGTCTC	1 cut(s)	298
FaeI	CATG	4 cut(s)	360, 407, 531, 664
FaqI	GGGAC	1 cut(s)	227
FatI	CATG	4 cut(s)	356, 403, 527, 660
Fnu4HI	GCNGC	1 cut(s)	759
FokI	GGATG	3 cut(s)	174, 568, 677
Fsp4HI	GCNGC	1 cut(s)	759
FspBI	CTAG	1 cut(s)	693
GlaI	GCGC	1 cut(s)	362
GluI	GCNGC	1 cut(s)	759
HaeII	RGCGCY	1 cut(s)	364
HapII	CCGG	4 cut(s)	213, 301, 364, 738
HgaI	GACGC	1 cut(s)	239
HhaI	GCGC	1 cut(s)	363
Hin1I	GRCGYC	1 cut(s)	361
Hin1II	CATG	4 cut(s)	360, 407, 531, 664
Hin6I	GCGC	1 cut(s)	361
HinP1I	GCGC	1 cut(s)	361
HinfI	GANTC	2 cut(s)	61, 209
HpaII	CCGG	4 cut(s)	213, 301, 364, 738
HphI	GGTGA	2 cut(s)	574, 629
Hpy188I	TCNGA	1 cut(s)	208
Hpy188III	TCNNGA	4 cut(s)	301, 553, 578, 587
Hpy99I	CGWCG	2 cut(s)	233, 316
HpyAV	CCTTC	1 cut(s)	25
HpyCH4III	ACNGT	1 cut(s)	264
HpyCH4IV	ACGT	1 cut(s)	501
HpyCH4V	TGCA	2 cut(s)	289, 499
HpyF3I	CTNAG	1 cut(s)	23
HpySE526I	ACGT	1 cut(s)	501
Hsp92I	GRCGYC	1 cut(s)	361
Hsp92II	CATG	4 cut(s)	360, 407, 531, 664
HspAI	GCGC	1 cut(s)	361
KasI	GGCGCC	1 cut(s)	360
Kpn2I	TCCGGA	1 cut(s)	300
KroI	GCCGGC	1 cut(s)	363
KroNI	GCCGGC	1 cut(s)	365
Kzo9I	GATC	9 cut(s)	47, 104, 195, 272, 308, 343, 350, 697, 791
LmnI	GCTCC	1 cut(s)	412
Lsp1109I	GCAGC	1 cut(s)	745
LweI	GCATC	1 cut(s)	361
MaeI	CTAG	1 cut(s)	693
MaeII	ACGT	1 cut(s)	501
MaeIII	GTNAC	5 cut(s)	428, 448, 562, 578, 667
MalI	GATC	9 cut(s)	49, 106, 197, 274, 310, 345, 352, 699, 793
MboI	GATC	9 cut(s)	47, 104, 195, 272, 308, 343, 350, 697, 791
MboII	GAAGA	2 cut(s)	345, 544
MflI	RGATCY	2 cut(s)	350, 697
MhlI	GDGCHC	1 cut(s)	323
MluCI	AATT	7 cut(s)	6, 54, 67, 296, 453, 512, 631
Mly113I	GGCGCC	1 cut(s)	361
MmeI	TCCRAC	1 cut(s)	625
MnlI	CCTC	9 cut(s)	111, 202, 214, 255, 264, 302, 386, 528, 561
MreI	CGCCGGCG	1 cut(s)	363
MroI	TCCGGA	1 cut(s)	300
MroNI	GCCGGC	1 cut(s)	363
MseI	TTAA	1 cut(s)	675
MslI	CAYNNNNRTG	1 cut(s)	421
MspI	CCGG	4 cut(s)	213, 301, 364, 738
MspR9I	CCNGG	2 cut(s)	436, 613
MvaI	CCWGG	2 cut(s)	436, 613
MvnI	CGCG	1 cut(s)	316
NaeI	GCCGGC	1 cut(s)	365
NarI	GGCGCC	1 cut(s)	361
NdeII	GATC	9 cut(s)	47, 104, 195, 272, 308, 343, 350, 697, 791
NgoMIV	GCCGGC	1 cut(s)	363
NlaIII	CATG	4 cut(s)	360, 407, 531, 664
NlaIV	GGNNCC	4 cut(s)	243, 362, 414, 685
NmuCI	GTSAC	2 cut(s)	562, 578
PdiI	GCCGGC	1 cut(s)	365
PfeI	GAWTC	2 cut(s)	61, 209
PflFI	GACNNNGTC	1 cut(s)	568
PinAI	ACCGGT	1 cut(s)	737
PkrI	GCNGC	1 cut(s)	760
Ple19I	CGATCG	1 cut(s)	311
PluTI	GGCGCC	1 cut(s)	364
PmaCI	CACGTG	1 cut(s)	502
PmlI	CACGTG	1 cut(s)	502
Ppu21I	YACGTR	1 cut(s)	502
PshAI	GACNNNNGTC	1 cut(s)	310
PshBI	ATTAAT	1 cut(s)	675
Psp6I	CCWGG	2 cut(s)	434, 611
PspCI	CACGTG	1 cut(s)	502
PspGI	CCWGG	2 cut(s)	434, 611
PspN4I	GGNNCC	4 cut(s)	243, 362, 414, 685
PspPI	GGNCC	3 cut(s)	241, 647, 683
PsuI	RGATCY	2 cut(s)	350, 697
PsyI	GACNNNGTC	1 cut(s)	568
PvuI	CGATCG	1 cut(s)	311
RseI	CAYNNNNRTG	1 cut(s)	421
SaqAI	TTAA	1 cut(s)	675
SatI	GCNGC	1 cut(s)	759
Sau3AI	GATC	9 cut(s)	47, 104, 195, 272, 308, 343, 350, 697, 791
Sau96I	GGNCC	3 cut(s)	241, 647, 683
ScrFI	CCNGG	2 cut(s)	436, 613
SduI	GDGCHC	1 cut(s)	323
SetI	ASST	7 cut(s)	24, 294, 397, 487, 504, 572, 652
SfaNI	GCATC	1 cut(s)	361
SfoI	GGCGCC	1 cut(s)	362
SgrAI	CRCCGGYG	1 cut(s)	363
SinI	GGWCC	3 cut(s)	241, 647, 683
SmiMI	CAYNNNNRTG	1 cut(s)	421
Sse9I	AATT	7 cut(s)	6, 54, 67, 296, 453, 512, 631
SsiI	CCGC	1 cut(s)	316
SspDI	GGCGCC	1 cut(s)	360
SspMI	CTAG	1 cut(s)	693
StyD4I	CCNGG	2 cut(s)	434, 611
TaaI	ACNGT	1 cut(s)	264
TaiI	ACGT	1 cut(s)	504
TaqI	TCGA	5 cut(s)	46, 103, 194, 256, 458
TaqII	GACCGA	1 cut(s)	229
TasI	AATT	7 cut(s)	6, 54, 67, 296, 453, 512, 631
TfiI	GAWTC	2 cut(s)	61, 209
Tru1I	TTAA	1 cut(s)	675
Tru9I	TTAA	1 cut(s)	675
TseFI	GTSAC	2 cut(s)	562, 578
TseI	GCWGC	1 cut(s)	758
Tsp45I	GTSAC	2 cut(s)	562, 578
TspDTI	ATGAA	3 cut(s)	328, 345, 649
TspGWI	ACGGA	2 cut(s)	493, 696
Tth111I	GACNNNGTC	1 cut(s)	568
VpaK11BI	GGWCC	3 cut(s)	241, 647, 683
VspI	ATTAAT	1 cut(s)	675
XspI	CTAG	1 cut(s)	693

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.