Rorug03G0209100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0001093
Physical Location & Seq
Forward (+)
18593707 .. 18596665
2959 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0209100.1

Sequence Viewer

Length: 837 bp
ATGTCAGTCTCCTCGGTAATTTCAGCCGTCACAAGAAGGCTAGAAGGAAAGGTAGCACTGATAACAGGAGGAGCTAGCGGCATAGGCGAATGCACAGCCAAAACCTTTGTCAATCATGGAGCCAAAGTTATCATTGCCGATGTCCAAGACGAGCTAGCCCATTCAGTCGTCGAATCCATAGGCTCGGAAAATTGCACCTTTGTCCATTGCGATGTCAGAGACGAAGATCAAATAAAAAATGCTGTGGAAAAAGCGGTTGCCACATACGGGAAACTAGACATCATGTTCAACAATGCAGGCATAGCTGACGAGAACAAGGCACGAATTATCGACAATACTAAGGACGATTTCGAGCGTGTGCTTGGTATCAACGTCACCGGCGTTTTCCTTGGCATAAAGCATGCTTCACAGCCCATGATTCGGGCTCGAACTGGCAGCATAATATCGACAGCTAGTGTGAGCTCCTATATTGGTGGTGCGGCATCACACGCCTATGCGTGTTCGAAGCACGCAGTCAATGGTTTGACCAAGAATGCAGCCGTTGAGCTTGGCCAATTTGGGATTAGAGTGAATTGCTTGTCACCCTATGCGCTTGTGACGCCTCTGGCTACGAAATTTGTTGGCCTTGATGATGAGGGATTTGAGAATATGACGAACTCTTTGGCTAATTTGAAGGGTGTGACACTTAAGGCACAAGATGTGGCAAATGCTGCTCTTTATTTGGCTAGTGATGAGGCCAGGTACATAAGTGGGCATAATCTTCTAATAGATGGAGGATTTAGCATAGTGAATCCATCATTTAGCAACATGTTTCGGTACCCAGAAGAAGAGCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

278

Amino Acids

29.54

Weight (kDa)

5.51

Isoelectric Point (pI)

25.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 17 - 205 8.3e-54 short chain dehydrogenase
KR PF08659 19 - 177 2e-13 KR domain
adh_short_C2 PF13561 25 - 261 6.7e-66 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 816
AccB1I GGYRCC 1 cut(s) 816
AciI CCGC 3 cut(s) 78, 254, 479
AcoI YGGCCR 1 cut(s) 550
AcsI RAATTY 1 cut(s) 614
AcyI GRCGYC 1 cut(s) 599
AfaI GTAC 2 cut(s) 743, 818
AfiI CCNNNNNNNGG 2 cut(s) 267, 420
AflII CTTAAG 1 cut(s) 686
AflIII ACRYGT 1 cut(s) 807
AgsI TTSAA 2 cut(s) 289, 673
AjnI CCWGG 1 cut(s) 737
AluBI AGCT 6 cut(s) 74, 154, 305, 452, 462, 547
AluI AGCT 6 cut(s) 74, 154, 305, 452, 462, 547
Alw21I GWGCWC 1 cut(s) 464
Alw26I GTCTC 2 cut(s) 13, 213
AoxI GGCC 3 cut(s) 550, 622, 735
ApeKI GCWGC 3 cut(s) 435, 536, 710
ApoI RAATTY 1 cut(s) 614
ArsI GACNNNNNNTTYG 4 cut(s) 93, 125, 643, 675
Asp718I GGTACC 1 cut(s) 816
AspLEI GCGC 1 cut(s) 592
AsuHPI GGTGA 2 cut(s) 367, 573
AsuII TTCGAA 1 cut(s) 503
AsuNHI GCTAGC 2 cut(s) 74, 154
BaeI ACNNNNGTAYC 2 cut(s) 733, 766
BalI TGGCCA 1 cut(s) 552
BanI GGYRCC 1 cut(s) 816
BanII GRGCYC 2 cut(s) 427, 464
Bbv12I GWGCWC 1 cut(s) 464
BbvI GCAGC 3 cut(s) 447, 548, 697
BccI CCATC 2 cut(s) 764, 802
BceAI ACGGC 2 cut(s) 11, 524
BciT130I CCWGG 1 cut(s) 739
BcoDI GTCTC 2 cut(s) 13, 213
BfaI CTAG 6 cut(s) 41, 75, 155, 275, 453, 726
BfrI CTTAAG 1 cut(s) 686
BisI GCNGC 5 cut(s) 79, 436, 480, 537, 711
BlsI GCNGC 5 cut(s) 80, 437, 481, 538, 712
Bme1390I CCNGG 1 cut(s) 739
BmiI GGNNCC 2 cut(s) 121, 818
BmrFI CCNGG 1 cut(s) 739
BmsI GCATC 1 cut(s) 491
BmtI GCTAGC 2 cut(s) 78, 158
Bpu14I TTCGAA 1 cut(s) 503
BsaHI GRCGYC 1 cut(s) 599
BsaJI CCNNGG 2 cut(s) 12, 388
BsaXI ACNNNNNCTCC 2 cut(s) 111, 141
Bsc4I CCNNNNNNNGG 2 cut(s) 267, 420
Bse118I RCCGGY 1 cut(s) 377
Bse1I ACTGG 1 cut(s) 436
Bse3DI GCAATG 2 cut(s) 132, 205
BseBI CCWGG 1 cut(s) 739
BseDI CCNNGG 2 cut(s) 12, 388
BseLI CCNNNNNNNGG 2 cut(s) 267, 420
BseMI GCAATG 2 cut(s) 132, 205
BseNI ACTGG 1 cut(s) 436
BseRI GAGGAG 1 cut(s) 84
BseXI GCAGC 3 cut(s) 447, 548, 697
BshFI GGCC 3 cut(s) 552, 624, 737
BshNI GGYRCC 1 cut(s) 816
BsiHKAI GWGCWC 1 cut(s) 464
BsiSI CCGG 1 cut(s) 378
BslI CCNNNNNNNGG 2 cut(s) 267, 420
BsmAI GTCTC 2 cut(s) 13, 213
BsmBI CGTCTC 1 cut(s) 213
BsmI GAATGC 2 cut(s) 95, 538
BsnI GGCC 3 cut(s) 552, 624, 737
Bsp119I TTCGAA 1 cut(s) 503
Bsp1286I GDGCHC 2 cut(s) 427, 464
Bsp143I GATC 1 cut(s) 226
BspACI CCGC 3 cut(s) 78, 254, 479
BspANI GGCC 3 cut(s) 552, 624, 737
BspLI GGNNCC 2 cut(s) 121, 818
BspOI GCTAGC 2 cut(s) 78, 158
BspQI GCTCTTC 1 cut(s) 822
BspT104I TTCGAA 1 cut(s) 503
BspT107I GGYRCC 1 cut(s) 816
BspTI CTTAAG 1 cut(s) 686
BsrDI GCAATG 2 cut(s) 132, 205
BsrFI RCCGGY 1 cut(s) 377
BsrI ACTGG 1 cut(s) 436
BssAI RCCGGY 1 cut(s) 377
BssECI CCNNGG 2 cut(s) 12, 388
BssMI GATC 1 cut(s) 226
BssNI GRCGYC 1 cut(s) 599
BssT1I CCWWGG 1 cut(s) 388
Bst2UI CCWGG 1 cut(s) 739
Bst6I CTCTTC 1 cut(s) 822
BstACI GRCGYC 1 cut(s) 599
BstAFI CTTAAG 1 cut(s) 686
BstAPI GCANNNNNTGC 1 cut(s) 710
BstBI TTCGAA 1 cut(s) 503
BstC8I GCNNGC 5 cut(s) 76, 156, 298, 402, 510
BstDEI CTNAG 1 cut(s) 339
BstHHI GCGC 1 cut(s) 592
BstKTI GATC 1 cut(s) 229
BstMAI GTCTC 2 cut(s) 13, 213
BstMBI GATC 1 cut(s) 226
BstMWI GCNNNNNNNGC 5 cut(s) 84, 302, 488, 598, 710
BstNI CCWGG 1 cut(s) 739
BstNSI RCATGY 2 cut(s) 404, 811
BstSCI CCNGG 1 cut(s) 737
BstV1I GCAGC 3 cut(s) 447, 548, 697
BsuRI GGCC 3 cut(s) 552, 624, 737
BtgZI GCGATG 1 cut(s) 225
BtsIMutI CAGTG 1 cut(s) 56
Cac8I GCNNGC 5 cut(s) 76, 156, 298, 402, 510
CfoI GCGC 1 cut(s) 592
Cfr10I RCCGGY 1 cut(s) 377
CseI GACGC 1 cut(s) 607
Csp6I GTAC 2 cut(s) 742, 817
CviAII CATG 5 cut(s) 116, 283, 401, 415, 808
CviQI GTAC 2 cut(s) 742, 817
DdeI CTNAG 1 cut(s) 339
DpnI GATC 1 cut(s) 228
DpnII GATC 1 cut(s) 226
EaeI YGGCCR 1 cut(s) 550
Eam1104I CTCTTC 1 cut(s) 822
EarI CTCTTC 1 cut(s) 822
Ecl136II GAGCTC 1 cut(s) 462
Eco130I CCWWGG 1 cut(s) 388
Eco24I GRGCYC 2 cut(s) 427, 464
Eco53kI GAGCTC 1 cut(s) 462
EcoICRI GAGCTC 1 cut(s) 462
EcoRII CCWGG 1 cut(s) 737
EcoT14I CCWWGG 1 cut(s) 388
EcoT38I GRGCYC 2 cut(s) 427, 464
ErhI CCWWGG 1 cut(s) 388
Esp3I CGTCTC 1 cut(s) 213
FaeI CATG 5 cut(s) 119, 286, 404, 418, 811
FatI CATG 5 cut(s) 115, 282, 400, 414, 807
Fnu4HI GCNGC 5 cut(s) 79, 436, 480, 537, 711
FriOI GRGCYC 2 cut(s) 427, 464
Fsp4HI GCNGC 5 cut(s) 79, 436, 480, 537, 711
FspBI CTAG 6 cut(s) 41, 75, 155, 275, 453, 726
GlaI GCGC 1 cut(s) 591
GluI GCNGC 5 cut(s) 79, 436, 480, 537, 711
HaeIII GGCC 3 cut(s) 552, 624, 737
HapII CCGG 1 cut(s) 378
HgaI GACGC 1 cut(s) 607
HhaI GCGC 1 cut(s) 592
Hin1I GRCGYC 1 cut(s) 599
Hin1II CATG 5 cut(s) 119, 286, 404, 418, 811
Hin6I GCGC 1 cut(s) 590
HinP1I GCGC 1 cut(s) 590
HinfI GANTC 3 cut(s) 173, 418, 790
HpaII CCGG 1 cut(s) 378
HphI GGTGA 2 cut(s) 367, 573
Hpy188I TCNGA 2 cut(s) 187, 218
Hpy99I CGWCG 1 cut(s) 173
HpyAV CCTTC 3 cut(s) 30, 38, 667
HpyCH4IV ACGT 1 cut(s) 372
HpyCH4V TGCA 4 cut(s) 93, 195, 296, 536
HpyF10VI GCNNNNNNNGC 5 cut(s) 84, 302, 488, 598, 710
HpyF3I CTNAG 1 cut(s) 339
HpySE526I ACGT 1 cut(s) 372
Hsp92I GRCGYC 1 cut(s) 599
Hsp92II CATG 5 cut(s) 119, 286, 404, 418, 811
HspAI GCGC 1 cut(s) 590
KpnI GGTACC 1 cut(s) 820
Kzo9I GATC 1 cut(s) 226
LguI GCTCTTC 1 cut(s) 822
LmnI GCTCC 3 cut(s) 71, 119, 467
LpnPI CCDG 7 cut(s) 51, 282, 391, 417, 590, 724, 751
Lsp1109I GCAGC 3 cut(s) 447, 548, 697
LweI GCATC 1 cut(s) 491
MaeI CTAG 6 cut(s) 41, 75, 155, 275, 453, 726
MaeII ACGT 1 cut(s) 372
MaeIII GTNAC 5 cut(s) 28, 373, 579, 595, 679
MalI GATC 1 cut(s) 228
MboI GATC 1 cut(s) 226
MboII GAAGA 3 cut(s) 236, 752, 836
MhlI GDGCHC 2 cut(s) 427, 464
MlsI TGGCCA 1 cut(s) 552
MluCI AATT 7 cut(s) 18, 190, 324, 554, 571, 614, 667
MluNI TGGCCA 1 cut(s) 552
MnlI CCTC 6 cut(s) 22, 62, 612, 628, 727, 767
Mox20I TGGCCA 1 cut(s) 552
MscI TGGCCA 1 cut(s) 552
MseI TTAA 1 cut(s) 687
MslI CAYNNNNRTG 2 cut(s) 210, 492
Msp20I TGGCCA 1 cut(s) 552
MspCI CTTAAG 1 cut(s) 686
MspI CCGG 1 cut(s) 378
MspR9I CCNGG 1 cut(s) 739
Mva1269I GAATGC 2 cut(s) 95, 538
MvaI CCWGG 1 cut(s) 739
MwoI GCNNNNNNNGC 5 cut(s) 84, 302, 488, 598, 710
NdeII GATC 1 cut(s) 226
NheI GCTAGC 2 cut(s) 74, 154
NlaIII CATG 5 cut(s) 119, 286, 404, 418, 811
NlaIV GGNNCC 2 cut(s) 121, 818
NmuCI GTSAC 5 cut(s) 28, 373, 579, 595, 679
NspI RCATGY 2 cut(s) 404, 811
NspV TTCGAA 1 cut(s) 503
PaeI GCATGC 1 cut(s) 404
PciI ACATGT 1 cut(s) 807
PciSI GCTCTTC 1 cut(s) 822
PcsI WCGNNNNNNNCGW 1 cut(s) 378
PctI GAATGC 2 cut(s) 95, 538
PfeI GAWTC 3 cut(s) 173, 418, 790
PkrI GCNGC 5 cut(s) 80, 437, 481, 538, 712
PscI ACATGT 1 cut(s) 807
Psp124BI GAGCTC 1 cut(s) 464
Psp6I CCWGG 1 cut(s) 737
PspGI CCWGG 1 cut(s) 737
PspN4I GGNNCC 2 cut(s) 121, 818
RsaI GTAC 2 cut(s) 743, 818
RsaNI GTAC 2 cut(s) 742, 817
RseI CAYNNNNRTG 2 cut(s) 210, 492
SacI GAGCTC 1 cut(s) 464
SapI GCTCTTC 1 cut(s) 822
SaqAI TTAA 1 cut(s) 687
SatI GCNGC 5 cut(s) 79, 436, 480, 537, 711
Sau3AI GATC 1 cut(s) 226
ScrFI CCNGG 1 cut(s) 739
SduI GDGCHC 2 cut(s) 427, 464
SfaNI GCATC 1 cut(s) 491
SfuI TTCGAA 1 cut(s) 503
SgrAI CRCCGGYG 1 cut(s) 377
SmiMI CAYNNNNRTG 2 cut(s) 210, 492
SmlI CTYRAG 1 cut(s) 686
SmoI CTYRAG 1 cut(s) 686
SphI GCATGC 1 cut(s) 404
Sse9I AATT 7 cut(s) 18, 190, 324, 554, 571, 614, 667
SsiI CCGC 3 cut(s) 78, 254, 479
SspMI CTAG 6 cut(s) 41, 75, 155, 275, 453, 726
SstI GAGCTC 1 cut(s) 464
StyD4I CCNGG 1 cut(s) 737
StyI CCWWGG 1 cut(s) 388
TaiI ACGT 1 cut(s) 375
TaqI TCGA 6 cut(s) 171, 330, 351, 427, 446, 503
TasI AATT 7 cut(s) 18, 190, 324, 554, 571, 614, 667
TauI GCSGC 2 cut(s) 81, 482
TfiI GAWTC 3 cut(s) 173, 418, 790
Tru1I TTAA 1 cut(s) 687
Tru9I TTAA 1 cut(s) 687
TscAI CASTG 1 cut(s) 63
TseFI GTSAC 5 cut(s) 28, 373, 579, 595, 679
TseI GCWGC 3 cut(s) 435, 536, 710
Tsp45I GTSAC 5 cut(s) 28, 373, 579, 595, 679
TspRI CASTG 1 cut(s) 63
Vha464I CTTAAG 1 cut(s) 686
XapI RAATTY 1 cut(s) 614
XceI RCATGY 2 cut(s) 404, 811
XspI CTAG 6 cut(s) 41, 75, 155, 275, 453, 726
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.