RchiOBHm_Chr2g0089781

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0001093
Physical Location & Seq
Reverse (-)
3852719 .. 3853118
400 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ46508

Sequence Viewer

Length: 312 bp
ATGCGGTGGCGTAGGAATACGTTGCTGCAACGTGGTGGTGCAAGGCGGCGGTGTGGTGACGATGGAGAATGCTGGCAGCAAGTTTGGAGGAGGGCGGCGATAGTTCCTTGCGGGAAGTGGAGGTTGGGCCGGGCCGCCGTGTTTGGTCAATTTTTTATTAGGATTTTAGTTTCAGGTTTTTGGTTAGGTCAAATAAAACGTCCCTACTCAATTGAGCTAGGGTTTGGAGGTTTTGGTCGTGTTGTGGAGCCATCTATATGGTGTTACTCCTGGGAACAATATGGGTGGAGTGGTTCGTCTGGCTGTTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

103

Amino Acids

12.01

Weight (kDa)

10.48

Isoelectric Point (pI)

67.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 6 cut(s) 4, 46, 49, 95, 111, 135
AjnI CCWGG 1 cut(s) 269
AjuI GAANNNNNNNTTGG 2 cut(s) 107, 139
AluBI AGCT 1 cut(s) 217
AluI AGCT 1 cut(s) 217
AoxI GGCC 2 cut(s) 127, 132
ApeKI GCWGC 2 cut(s) 25, 76
ArsI GACNNNNNNTTYG 2 cut(s) 184, 216
AspS9I GGNCC 2 cut(s) 127, 132
AsuC2I CCSGG 1 cut(s) 131
AsuHPI GGTGA 1 cut(s) 68
BbvI GCAGC 2 cut(s) 12, 88
BccI CCATC 2 cut(s) 56, 259
BceAI ACGGC 1 cut(s) 122
BciT130I CCWGG 1 cut(s) 271
BcnI CCSGG 1 cut(s) 131
BfaI CTAG 1 cut(s) 218
BisI GCNGC 5 cut(s) 26, 47, 77, 96, 135
BlsI GCNGC 5 cut(s) 27, 48, 78, 97, 136
Bme1390I CCNGG 2 cut(s) 131, 271
BmgT120I GGNCC 2 cut(s) 127, 132
BmiI GGNNCC 1 cut(s) 249
BmrFI CCNGG 2 cut(s) 131, 271
BpuMI CCSGG 1 cut(s) 131
BsaJI CCNNGG 1 cut(s) 270
BseBI CCWGG 1 cut(s) 271
BseDI CCNNGG 1 cut(s) 270
BseRI GAGGAG 1 cut(s) 103
BseXI GCAGC 2 cut(s) 12, 88
BshFI GGCC 2 cut(s) 129, 134
BsiSI CCGG 1 cut(s) 130
BslFI GGGAC 1 cut(s) 186
BsmFI GGGAC 1 cut(s) 186
BsmI GAATGC 1 cut(s) 74
BsnI GGCC 2 cut(s) 129, 134
BspACI CCGC 6 cut(s) 4, 46, 49, 95, 111, 135
BspANI GGCC 2 cut(s) 129, 134
BspLI GGNNCC 1 cut(s) 249
BssECI CCNNGG 1 cut(s) 270
Bst2UI CCWGG 1 cut(s) 271
BstC8I GCNNGC 1 cut(s) 74
BstNI CCWGG 1 cut(s) 271
BstSCI CCNGG 2 cut(s) 129, 269
BstV1I GCAGC 2 cut(s) 12, 88
BstXI CCANNNNNNTGG 1 cut(s) 258
BsuRI GGCC 2 cut(s) 129, 134
Cac8I GCNNGC 1 cut(s) 74
Cfr13I GGNCC 2 cut(s) 127, 132
CspCI CAANNNNNGTGG 2 cut(s) 266, 301
CviJI RGCY 5 cut(s) 129, 134, 217, 250, 303
CviKI_1 RGCY 5 cut(s) 129, 134, 217, 250, 303
EcoRII CCWGG 1 cut(s) 269
FaiI YATR 3 cut(s) 257, 259, 282
FaqI GGGAC 1 cut(s) 186
FauI CCCGC 1 cut(s) 104
Fnu4HI GCNGC 5 cut(s) 26, 47, 77, 96, 135
Fsp4HI GCNGC 5 cut(s) 26, 47, 77, 96, 135
FspBI CTAG 1 cut(s) 218
GluI GCNGC 5 cut(s) 26, 47, 77, 96, 135
HaeIII GGCC 2 cut(s) 129, 134
HapII CCGG 1 cut(s) 130
HpaII CCGG 1 cut(s) 130
HphI GGTGA 1 cut(s) 68
HpyCH4IV ACGT 3 cut(s) 20, 31, 199
HpyCH4V TGCA 2 cut(s) 28, 41
HpySE526I ACGT 3 cut(s) 20, 31, 199
LmnI GCTCC 1 cut(s) 247
LpnPI CCDG 6 cut(s) 58, 143, 159, 256, 283, 285
Lsp1109I GCAGC 2 cut(s) 12, 88
MaeI CTAG 1 cut(s) 218
MaeII ACGT 3 cut(s) 20, 31, 199
MaeIII GTNAC 2 cut(s) 56, 263
MfeI CAATTG 1 cut(s) 210
MluCI AATT 2 cut(s) 149, 210
MnlI CCTC 4 cut(s) 81, 84, 114, 221
MslI CAYNNNNRTG 1 cut(s) 256
MspI CCGG 1 cut(s) 130
MspR9I CCNGG 2 cut(s) 131, 271
MunI CAATTG 1 cut(s) 210
Mva1269I GAATGC 1 cut(s) 74
MvaI CCWGG 1 cut(s) 271
NciI CCSGG 1 cut(s) 131
NlaIV GGNNCC 1 cut(s) 249
NmuCI GTSAC 1 cut(s) 56
PctI GAATGC 1 cut(s) 74
PkrI GCNGC 5 cut(s) 27, 48, 78, 97, 136
Psp6I CCWGG 1 cut(s) 269
PspGI CCWGG 1 cut(s) 269
PspN4I GGNNCC 1 cut(s) 249
PspPI GGNCC 2 cut(s) 127, 132
RseI CAYNNNNRTG 1 cut(s) 256
SatI GCNGC 5 cut(s) 26, 47, 77, 96, 135
Sau96I GGNCC 2 cut(s) 127, 132
ScrFI CCNGG 2 cut(s) 131, 271
SetI ASST 8 cut(s) 23, 34, 125, 178, 190, 202, 219, 232
SmiMI CAYNNNNRTG 1 cut(s) 256
Sse9I AATT 2 cut(s) 149, 210
SsiI CCGC 6 cut(s) 4, 46, 49, 95, 111, 135
SspMI CTAG 1 cut(s) 218
StyD4I CCNGG 2 cut(s) 129, 269
TaiI ACGT 3 cut(s) 23, 34, 202
TasI AATT 2 cut(s) 149, 210
TauI GCSGC 3 cut(s) 49, 98, 137
TseFI GTSAC 1 cut(s) 56
TseI GCWGC 2 cut(s) 25, 76
Tsp45I GTSAC 1 cut(s) 56
XspI CTAG 1 cut(s) 218
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.