Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0001093

Physical Location & Seq

Genomic Coordinates Reverse (-)

59529057 .. 59533984

Gene Structure 4928 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0472700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1173 bp

ATGCGATTGCATCGATCATCTGAATTCCTATATAATATTGGTTTCAAGGTTGAACATGTGCGTTCTGAGAGAAATTTGCTTGCTGAGGTTGATAGTCGGTGTATTGTGAAACTTTATTATTCATTTCAAGATTCCGATTTCTTATACCTTATCATGGAGTATTTACCTGGTGGTGACATTATGACATTATTGATGAGAGAAGATACTCTTTCTGAAGATGTTGCACGTTTTTATATGGGAGAGAGTATTCTGGCTATTCACTCAATCCATCAACACAACTATGTTCACAGGGACATAAAACCAGACAATCTGATACTGGATAAAACTGGCCATTTGAAGCTTTCAGATTTTGGCTTGTGTAAACCTCTGGATGACAAGTATTCTACATTATTGGAAACTGAGGATTTAACATCTCAAGAATGCATAGCTGAAACTGAAGGACAATCTGGCTGTGATAAGGTTCCTTGGTTGATGCCAAAAGAACAATTACAACAATGGAAACGTAATCGGCGTGCCTTGGCTTATTCAACTGTTGGAACTCTTGACTACATGGCACCCGAGGTTTTGCTGAAGAAAGGATATGGTATGGAGTGTGATTGGTGGTCACTAGGAGCAATCATGTACGAGATGCTAGTAGGCTATCCTCCATTCTGCTCTGATGATCCAAGGATCACATGCCGCAAGATTATCAATTGGAGAACATGCCTGAAGTTTCCCGACGAGCCAAAAATTTCAGACGAGGCAAGGGATTTGATCTGTCACTTGTTATGTGATGTTGAAACAAGGCTTGGGACACATGGAGTAGAAGAAATTAAGGCACATCCTTGGTTCAGAGGTATTGAGTGGGACAGGCTATATGAAATTGAAGCTGCGTATAAACCTACAGTTGTTGGAGACTTGGACACTCAGAATTTCGAGAAGTTTCCTGATCTAGAAGGTGCACCATCTGCAACACCAACAGTGGGACCGTGGCGGAAGATGTTAACCTCTAAAGATAACAATTTCATTGGATACACTTTCAAGAAATCAGATGTCCTTAAATCACTTGAAAGTTCAGGTACAGACATGAGATCAAATGGATCTTCAAAGTCCCCATCACTGATATCCTTGTTAGGTAGAATTGACTTGCAAGACAGTGTAATACCAGAGGCCGAACCAAAGCAGGAAGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002009 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005874 GO:0005886 GO:0005929 GO:0006996 GO:0007275 GO:0007369 GO:0008150 GO:0009653 GO:0009790 GO:0009888 GO:0009966 GO:0009968 GO:0009987 GO:0010646 GO:0010648 GO:0015630 GO:0016020 GO:0016043 GO:0022603 GO:0022607 GO:0023051 GO:0023057 GO:0030030 GO:0030031 GO:0030111 GO:0030178 GO:0032501 GO:0032502 GO:0042995 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0044782 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048598 GO:0048729 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051239 GO:0060026 GO:0060027 GO:0060271 GO:0060429 GO:0060828 GO:0065007 GO:0070925 GO:0071840 GO:0071944 GO:0090090 GO:0090175 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0120025 GO:0120031 GO:0120036 GO:1905330 GO:2000026 GO:2000027 GO:2000050 GO:2000095

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_10 TPR_12 TPR_8

Protein Analysis

390

Amino Acids

44.82

Weight (kDa)

5.12

Isoelectric Point (pI)

44.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	18 - 147	1.6e-31	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	18 - 130	2.6e-15	Protein tyrosine and serine/threonine kinase
ABC1	PF03109	49 - 127	7.6e-07	ABC1 atypical kinase-like domain
Pkinase	PF00069	174 - 277	2.1e-21	Protein kinase domain
Pkinase_C	PF00433	297 - 340	1.3e-07	Protein kinase C terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001093)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G25400 AT1G25400 AT1G68440
fragaria_vesca	FvH4_4g27210 FvH4_5g09320 FvH4_5g18320 FvH4_5g36190 FvH4_5g36660 FvH4_6g02080 FvH4_6g18410 FvH4_6g37922 FvH4_6g48101
malus_domestica	MD13G1040500.v1.1 MD16G1041500.v1.1
prunus_persica	Prupe.1G312600_v2.0.a1
pyrus_communis	pycom13g03470 pycom16g03590
rosa_chinensis	RchiOBHm_Chr2g0089781 RchiOBHm_Chr2g0161601 RchiOBHm_Chr4g0435001 RchiOBHm_Chr5g0057351 RchiOBHm_Chr6g0279821 RchiOBHm_Chr7g0227101
rosa_laevigata	RLG00000006630 RLG00000007926
rosa_multiflora	Rmu_co7981798.1_g000001 Rmu_co8240437.1_g000001 Rmu_sc0000400.1_g000034 Rmu_sc0000869.1_g000026 Rmu_sc0001246.1_g000017 Rmu_sc0002430.1_g000001 Rmu_sc0004574.1_g000051 Rmu_sc0009868.1_g000002 Rmu_sc0010765.1_g000001
rosa_roxburghii	Rroxscaffold_1G00019050 Rroxscaffold_2G00088100 Rroxscaffold_5G00376170
rosa_rugosa	Rorug02G0108200 Rorug02G0398300 Rorug02G0435100 Rorug03G0104500 Rorug03G0112000 Rorug03G0209100 Rorug04G0021800 Rorug04G0169800 Rorug04G0281500 Rorug04G0390300 Rorug05G0263200 Rorug05G0281200 Rorug06G0472700 Rorug07G0039700 Rorug07G0207300
rosa_samantha	Rh4AG337000 Rh4BG161500 Rh4BG344900 Rh4CG359600 Rh4DG339400 Rh5DG431200
rosa_wichuraiana	Rw4G029380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	553
AciI	CCGC	2 cut(s)	679, 973
AclWI	GGATC	3 cut(s)	656, 677, 1087
AcoI	YGGCCR	1 cut(s)	328
AcsI	RAATTY	4 cut(s)	23, 73, 729, 910
AcuI	CTGAAG	4 cut(s)	234, 456, 590, 728
AfaI	GTAC	2 cut(s)	623, 1060
AfiI	CCNNNNNNNGG	2 cut(s)	154, 962
AflIII	ACRYGT	1 cut(s)	55
AjnI	CCWGG	1 cut(s)	166
AjuI	GAANNNNNNNTTGG	2 cut(s)	771, 803
AluBI	AGCT	3 cut(s)	340, 428, 869
AluI	AGCT	3 cut(s)	340, 428, 869
Alw21I	GWGCWC	1 cut(s)	943
Alw26I	GTCTC	1 cut(s)	888
Alw44I	GTGCAC	1 cut(s)	939
AlwI	GGATC	3 cut(s)	656, 677, 1087
Ama87I	CYCGRG	1 cut(s)	557
AoxI	GGCC	2 cut(s)	328, 1149
ApaLI	GTGCAC	1 cut(s)	939
ApeKI	GCWGC	1 cut(s)	869
ApoI	RAATTY	4 cut(s)	23, 73, 729, 910
AspS9I	GGNCC	1 cut(s)	965
AsuHPI	GGTGA	1 cut(s)	185
AvaI	CYCGRG	1 cut(s)	557
AvaII	GGWCC	1 cut(s)	965
BaeGI	GKGCMC	1 cut(s)	943
BalI	TGGCCA	1 cut(s)	330
BanI	GGYRCC	1 cut(s)	553
Bbv12I	GWGCWC	1 cut(s)	943
BbvCI	CCTCAGC	1 cut(s)	84
BbvI	GCAGC	1 cut(s)	856
BccI	CCATC	3 cut(s)	276, 952, 1102
BciT130I	CCWGG	1 cut(s)	168
BciVI	GTATCC	1 cut(s)	1004
BcoDI	GTCTC	1 cut(s)	888
BfaI	CTAG	3 cut(s)	608, 632, 932
BfmI	CTRYAG	1 cut(s)	882
BfuI	GTATCC	1 cut(s)	1004
BisI	GCNGC	2 cut(s)	679, 870
BlsI	GCNGC	2 cut(s)	680, 871
Bme1390I	CCNGG	1 cut(s)	168
Bme18I	GGWCC	1 cut(s)	965
BmeT110I	CYCGRG	1 cut(s)	557
BmgT120I	GGNCC	1 cut(s)	965
BmiI	GGNNCC	3 cut(s)	462, 555, 966
BmrFI	CCNGG	1 cut(s)	168
BmsI	GCATC	3 cut(s)	19, 462, 618
Bpu10I	CCTNAGC	1 cut(s)	84
BpuEI	CTTGAG	1 cut(s)	399
Bsa29I	ATCGAT	1 cut(s)	13
BsaJI	CCNNGG	6 cut(s)	464, 516, 558, 665, 824, 968
Bsc4I	CCNNNNNNNGG	2 cut(s)	154, 962
Bse1I	ACTGG	2 cut(s)	321, 331
BseBI	CCWGG	1 cut(s)	168
BseCI	ATCGAT	1 cut(s)	13
BseDI	CCNNGG	6 cut(s)	464, 516, 558, 665, 824, 968
BseGI	GGATG	2 cut(s)	376, 820
BseLI	CCNNNNNNNGG	2 cut(s)	154, 962
BseMII	CTCAG	4 cut(s)	57, 75, 390, 920
BseNI	ACTGG	2 cut(s)	321, 331
BseSI	GKGCMC	1 cut(s)	943
BseXI	GCAGC	1 cut(s)	856
BshFI	GGCC	2 cut(s)	330, 1151
BshNI	GGYRCC	1 cut(s)	553
BshVI	ATCGAT	1 cut(s)	13
BsiHKAI	GWGCWC	1 cut(s)	943
BsiHKCI	CYCGRG	1 cut(s)	557
BslFI	GGGAC	5 cut(s)	305, 805, 860, 978, 1075
BslI	CCNNNNNNNGG	2 cut(s)	154, 962
BsmAI	GTCTC	1 cut(s)	888
BsmFI	GGGAC	5 cut(s)	305, 805, 860, 978, 1075
BsmI	GAATGC	1 cut(s)	425
BsnI	GGCC	2 cut(s)	330, 1151
BsoBI	CYCGRG	1 cut(s)	557
Bsp1286I	GDGCHC	1 cut(s)	943
Bsp143I	GATC	7 cut(s)	14, 661, 669, 753, 928, 1070, 1079
BspACI	CCGC	2 cut(s)	679, 973
BspANI	GGCC	2 cut(s)	330, 1151
BspCNI	CTCAG	4 cut(s)	58, 76, 391, 919
BspDI	ATCGAT	1 cut(s)	13
BspLI	GGNNCC	3 cut(s)	462, 555, 966
BspPI	GGATC	3 cut(s)	656, 677, 1087
BspT107I	GGYRCC	1 cut(s)	553
BsrI	ACTGG	2 cut(s)	321, 331
BssECI	CCNNGG	6 cut(s)	464, 516, 558, 665, 824, 968
BssMI	GATC	7 cut(s)	14, 661, 669, 753, 928, 1070, 1079
BssT1I	CCWWGG	4 cut(s)	464, 516, 665, 824
Bst2UI	CCWGG	1 cut(s)	168
Bst4CI	ACNGT	5 cut(s)	532, 886, 961, 969, 1136
BstAPI	GCANNNNNTGC	1 cut(s)	947
BstC8I	GCNNGC	2 cut(s)	81, 513
BstDEI	CTNAG	4 cut(s)	66, 84, 399, 906
BstDSI	CCRYGG	1 cut(s)	968
BstF5I	GGATG	2 cut(s)	376, 820
BstKTI	GATC	7 cut(s)	17, 664, 672, 756, 931, 1073, 1082
BstMAI	GTCTC	1 cut(s)	888
BstMBI	GATC	7 cut(s)	14, 661, 669, 753, 928, 1070, 1079
BstMWI	GCNNNNNNNGC	1 cut(s)	947
BstNI	CCWGG	1 cut(s)	168
BstNSI	RCATGY	3 cut(s)	59, 678, 705
BstSCI	CCNGG	1 cut(s)	166
BstSFI	CTRYAG	1 cut(s)	882
BstSLI	GKGCMC	1 cut(s)	943
BstV1I	GCAGC	1 cut(s)	856
BstX2I	RGATCY	1 cut(s)	1079
BstYI	RGATCY	1 cut(s)	1079
Bsu15I	ATCGAT	1 cut(s)	13
BsuI	GTATCC	1 cut(s)	1004
BsuRI	GGCC	2 cut(s)	330, 1151
BsuTUI	ATCGAT	1 cut(s)	13
BtgI	CCRYGG	1 cut(s)	968
BtsCI	GGATG	2 cut(s)	376, 820
BtsIMutI	CAGTG	3 cut(s)	966, 1097, 1141
Cac8I	GCNNGC	2 cut(s)	81, 513
Cfr13I	GGNCC	1 cut(s)	965
ClaI	ATCGAT	1 cut(s)	13
CsiI	ACCWGGT	1 cut(s)	166
Csp6I	GTAC	2 cut(s)	622, 1059
CviAII	CATG	8 cut(s)	56, 154, 550, 619, 675, 702, 797, 1066
CviQI	GTAC	2 cut(s)	622, 1059
DdeI	CTNAG	4 cut(s)	66, 84, 399, 906
DpnI	GATC	7 cut(s)	16, 663, 671, 755, 930, 1072, 1081
DpnII	GATC	7 cut(s)	14, 661, 669, 753, 928, 1070, 1079
EaeI	YGGCCR	1 cut(s)	328
EciI	GGCGGA	1 cut(s)	988
Eco130I	CCWWGG	4 cut(s)	464, 516, 665, 824
Eco32I	GATATC	1 cut(s)	1104
Eco47I	GGWCC	1 cut(s)	965
Eco57I	CTGAAG	4 cut(s)	234, 456, 590, 728
Eco88I	CYCGRG	1 cut(s)	557
EcoRI	GAATTC	1 cut(s)	23
EcoRII	CCWGG	1 cut(s)	166
EcoRV	GATATC	1 cut(s)	1104
EcoT14I	CCWWGG	4 cut(s)	464, 516, 665, 824
EcoT22I	ATGCAT	1 cut(s)	425
ErhI	CCWWGG	4 cut(s)	464, 516, 665, 824
FaeI	CATG	8 cut(s)	59, 157, 553, 622, 678, 705, 800, 1069
FalI	AAGNNNNNCTT	2 cut(s)	192, 224
FaqI	GGGAC	5 cut(s)	305, 805, 860, 978, 1075
FatI	CATG	8 cut(s)	55, 153, 549, 618, 674, 701, 796, 1065
Fnu4HI	GCNGC	2 cut(s)	679, 870
FokI	GGATG	2 cut(s)	383, 807
Fsp4HI	GCNGC	2 cut(s)	679, 870
FspBI	CTAG	3 cut(s)	608, 632, 932
GluI	GCNGC	2 cut(s)	679, 870
HaeIII	GGCC	2 cut(s)	330, 1151
Hin1II	CATG	8 cut(s)	59, 157, 553, 622, 678, 705, 800, 1069
HincII	GTYRAC	1 cut(s)	984
HindII	GTYRAC	1 cut(s)	984
HindIII	AAGCTT	1 cut(s)	338
HinfI	GANTC	1 cut(s)	131
HpaI	GTTAAC	1 cut(s)	984
HphI	GGTGA	1 cut(s)	185
Hpy166II	GTNNAC	4 cut(s)	286, 362, 941, 984
Hpy188III	TCNNGA	9 cut(s)	128, 368, 416, 542, 716, 916, 926, 932, 1021
Hpy8I	GTNNAC	4 cut(s)	286, 362, 941, 984
Hpy99I	CGWCG	1 cut(s)	722
HpyAV	CCTTC	2 cut(s)	431, 929
HpyCH4III	ACNGT	5 cut(s)	532, 886, 961, 969, 1136
HpyCH4IV	ACGT	2 cut(s)	226, 502
HpyCH4V	TGCA	6 cut(s)	10, 224, 423, 941, 950, 1129
HpyF10VI	GCNNNNNNNGC	1 cut(s)	947
HpyF3I	CTNAG	4 cut(s)	66, 84, 399, 906
HpySE526I	ACGT	2 cut(s)	226, 502
Hsp92II	CATG	8 cut(s)	59, 157, 553, 622, 678, 705, 800, 1069
KspAI	GTTAAC	1 cut(s)	984
Kzo9I	GATC	7 cut(s)	14, 661, 669, 753, 928, 1070, 1079
LmnI	GCTCC	1 cut(s)	611
Lsp1109I	GCAGC	1 cut(s)	856
LweI	GCATC	3 cut(s)	19, 462, 618
MabI	ACCWGGT	1 cut(s)	166
MaeI	CTAG	3 cut(s)	608, 632, 932
MaeII	ACGT	2 cut(s)	226, 502
MaeIII	GTNAC	3 cut(s)	173, 603, 758
MalI	GATC	7 cut(s)	16, 663, 671, 755, 930, 1072, 1081
MboI	GATC	7 cut(s)	14, 661, 669, 753, 928, 1070, 1079
MboII	GAAGA	6 cut(s)	212, 227, 583, 818, 988, 1074
MfeI	CAATTG	1 cut(s)	691
MflI	RGATCY	1 cut(s)	1079
MhlI	GDGCHC	1 cut(s)	943
MlsI	TGGCCA	1 cut(s)	330
MluNI	TGGCCA	1 cut(s)	330
MmeI	TCCRAC	2 cut(s)	514, 871
MnlI	CCTC	9 cut(s)	79, 375, 394, 553, 654, 733, 827, 997, 1141
Mox20I	TGGCCA	1 cut(s)	330
Mph1103I	ATGCAT	1 cut(s)	425
MscI	TGGCCA	1 cut(s)	330
MseI	TTAA	4 cut(s)	407, 813, 983, 1038
MslI	CAYNNNNRTG	1 cut(s)	279
Msp20I	TGGCCA	1 cut(s)	330
MspR9I	CCNGG	1 cut(s)	168
MunI	CAATTG	1 cut(s)	691
Mva1269I	GAATGC	1 cut(s)	425
MvaI	CCWGG	1 cut(s)	168
MwoI	GCNNNNNNNGC	1 cut(s)	947
NdeII	GATC	7 cut(s)	14, 661, 669, 753, 928, 1070, 1079
NlaIII	CATG	8 cut(s)	59, 157, 553, 622, 678, 705, 800, 1069
NlaIV	GGNNCC	3 cut(s)	462, 555, 966
NmuCI	GTSAC	3 cut(s)	173, 603, 758
NsiI	ATGCAT	1 cut(s)	425
NspI	RCATGY	3 cut(s)	59, 678, 705
PciI	ACATGT	1 cut(s)	55
PcsI	WCGNNNNNNNCGW	1 cut(s)	508
PctI	GAATGC	1 cut(s)	425
PfeI	GAWTC	1 cut(s)	131
PkrI	GCNGC	2 cut(s)	680, 871
PscI	ACATGT	1 cut(s)	55
Psp6I	CCWGG	1 cut(s)	166
PspGI	CCWGG	1 cut(s)	166
PspN4I	GGNNCC	3 cut(s)	462, 555, 966
PspPI	GGNCC	1 cut(s)	965
PsuI	RGATCY	1 cut(s)	1079
RsaI	GTAC	2 cut(s)	623, 1060
RsaNI	GTAC	2 cut(s)	622, 1059
RseI	CAYNNNNRTG	1 cut(s)	279
SaqAI	TTAA	4 cut(s)	407, 813, 983, 1038
SatI	GCNGC	2 cut(s)	679, 870
Sau3AI	GATC	7 cut(s)	14, 661, 669, 753, 928, 1070, 1079
Sau96I	GGNCC	1 cut(s)	965
ScrFI	CCNGG	1 cut(s)	168
SduI	GDGCHC	1 cut(s)	943
SexAI	ACCWGGT	1 cut(s)	166
SfaNI	GCATC	3 cut(s)	19, 462, 618
SfcI	CTRYAG	1 cut(s)	882
SinI	GGWCC	1 cut(s)	965
SmiMI	CAYNNNNRTG	1 cut(s)	279
SmlI	CTYRAG	1 cut(s)	414
SmoI	CTYRAG	1 cut(s)	414
SsiI	CCGC	2 cut(s)	679, 973
SspI	AATATT	1 cut(s)	37
SspMI	CTAG	3 cut(s)	608, 632, 932
StyD4I	CCNGG	1 cut(s)	166
StyI	CCWWGG	4 cut(s)	464, 516, 665, 824
TaaI	ACNGT	5 cut(s)	532, 886, 961, 969, 1136
TaiI	ACGT	2 cut(s)	229, 505
TaqI	TCGA	2 cut(s)	13, 915
TauI	GCSGC	1 cut(s)	681
TfiI	GAWTC	1 cut(s)	131
Tru1I	TTAA	4 cut(s)	407, 813, 983, 1038
Tru9I	TTAA	4 cut(s)	407, 813, 983, 1038
TscAI	CASTG	3 cut(s)	966, 1104, 1141
TseFI	GTSAC	3 cut(s)	173, 603, 758
TseI	GCWGC	1 cut(s)	869
Tsp45I	GTSAC	3 cut(s)	173, 603, 758
TspDTI	ATGAA	3 cut(s)	111, 873, 994
TspRI	CASTG	3 cut(s)	966, 1104, 1141
VneI	GTGCAC	1 cut(s)	939
VpaK11BI	GGWCC	1 cut(s)	965
XapI	RAATTY	4 cut(s)	23, 73, 729, 910
XbaI	TCTAGA	1 cut(s)	931
XceI	RCATGY	3 cut(s)	59, 678, 705
XspI	CTAG	3 cut(s)	608, 632, 932
Zsp2I	ATGCAT	1 cut(s)	425

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.