FvH4_6g02080

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0001093
Physical Location & Seq
Reverse (-)
1218962 .. 1219731
770 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g02080.t1

Sequence Viewer

Length: 501 bp
ATGGCGTGGGATCCCCGGAGTCTTGAACTGATGTCTTGTTGCGAGGTTATGGGTGGCGGTATAACCAGATCGACGACGAGTCTGCGTTCTCACAGATCGGCATCGATTTTGTCTCTAGGACTAAACTATGGCTTCGCAGCAGGACTCAGTGGTGGTCAGAATGCATACAGGGGCTCCGACGACGATGTCAGCCCAGACCTTGTGGCGGCGCTGGGGGTGAAACAGAGGTGGCAACATGAGGGTGGATTACCTTTGCACGTGGTCTGGTGGTATTTGGACACGGTGTGGAAGAAGGAGAATTTGCTCGTTTTAGTGTTGGCAGCAAGGTTGTATCGTTACTCTCAGGACTGTGTAGCTCTTTTTGAGCGTGAAATTGGGTTAGGGGTTGGGCCCACTTGGCTCATGGATGTTGCTATTGGCGACGGACCCGTAACTACGGATCTTTTTGGGAATGTGTGTCGTGGTGTAGGTACCACAACCGGTCATTCTATTATGCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

167

Amino Acids

18.0

Weight (kDa)

5.74

Isoelectric Point (pI)

34.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 185
Acc65I GGTACC 1 cut(s) 470
AccB1I GGYRCC 1 cut(s) 470
AciI CCGC 2 cut(s) 57, 206
AclWI GGATC 3 cut(s) 5, 18, 447
AcsI RAATTY 1 cut(s) 298
AcvI CACGTG 1 cut(s) 259
AdeI CACNNNGTG 1 cut(s) 285
AfaI GTAC 1 cut(s) 472
AfiI CCNNNNNNNGG 1 cut(s) 205
AgeI ACCGGT 1 cut(s) 479
AgsI TTSAA 1 cut(s) 26
AhdI GACNNNNNGTC 1 cut(s) 78
AluBI AGCT 1 cut(s) 356
AluI AGCT 1 cut(s) 356
Alw26I GTCTC 1 cut(s) 117
AlwI GGATC 3 cut(s) 5, 18, 447
AoxI GGCC 1 cut(s) 389
ApaI GGGCCC 1 cut(s) 393
ApeKI GCWGC 2 cut(s) 137, 320
ApoI RAATTY 1 cut(s) 298
AsiGI ACCGGT 1 cut(s) 479
Asp718I GGTACC 1 cut(s) 470
AspLEI GCGC 1 cut(s) 211
AspS9I GGNCC 3 cut(s) 389, 390, 425
AsuC2I CCSGG 1 cut(s) 16
AsuHPI GGTGA 1 cut(s) 229
AvaII GGWCC 1 cut(s) 425
BaeGI GKGCMC 1 cut(s) 393
BamHI GGATCC 1 cut(s) 10
BanI GGYRCC 1 cut(s) 470
BanII GRGCYC 2 cut(s) 176, 393
BbrPI CACGTG 1 cut(s) 259
BbvI GCAGC 2 cut(s) 149, 332
BcgI CGANNNNNNTGC 2 cut(s) 64, 98
BcnI CCSGG 1 cut(s) 16
BcoDI GTCTC 1 cut(s) 117
BfaI CTAG 1 cut(s) 116
BfoI RGCGCY 1 cut(s) 212
BglI GCCNNNNNGGC 1 cut(s) 397
BisI GCNGC 3 cut(s) 138, 207, 321
BlsI GCNGC 3 cut(s) 139, 208, 322
Bme1390I CCNGG 1 cut(s) 16
Bme18I GGWCC 1 cut(s) 425
BmeRI GACNNNNNGTC 1 cut(s) 78
BmgT120I GGNCC 3 cut(s) 389, 390, 425
BmiI GGNNCC 5 cut(s) 12, 175, 391, 427, 472
BmrFI CCNGG 1 cut(s) 16
BmsI GCATC 1 cut(s) 110
BpuMI CCSGG 1 cut(s) 16
Bsa29I ATCGAT 1 cut(s) 104
BsaAI YACGTR 1 cut(s) 259
BsaBI GATNNNNATC 1 cut(s) 100
BsaJI CCNNGG 1 cut(s) 14
BsaWI WCCGGW 1 cut(s) 479
BsaXI ACNNNNNCTCC 2 cut(s) 158, 188
Bsc4I CCNNNNNNNGG 1 cut(s) 205
Bse118I RCCGGY 1 cut(s) 479
Bse8I GATNNNNATC 1 cut(s) 100
BseCI ATCGAT 1 cut(s) 104
BseDI CCNNGG 1 cut(s) 14
BseGI GGATG 1 cut(s) 412
BseJI GATNNNNATC 1 cut(s) 100
BseLI CCNNNNNNNGG 1 cut(s) 205
BseMII CTCAG 2 cut(s) 160, 356
BseSI GKGCMC 1 cut(s) 393
BseXI GCAGC 2 cut(s) 149, 332
BseYI CCCAGC 1 cut(s) 211
BshFI GGCC 1 cut(s) 391
BshNI GGYRCC 1 cut(s) 470
BshTI ACCGGT 1 cut(s) 479
BshVI ATCGAT 1 cut(s) 104
BsiSI CCGG 2 cut(s) 16, 480
BslI CCNNNNNNNGG 1 cut(s) 205
BsmAI GTCTC 1 cut(s) 117
BsmI GAATGC 1 cut(s) 166
BsnI GGCC 1 cut(s) 391
Bsp120I GGGCCC 1 cut(s) 389
Bsp1286I GDGCHC 2 cut(s) 176, 393
Bsp143I GATC 4 cut(s) 10, 68, 95, 439
BspACI CCGC 2 cut(s) 57, 206
BspANI GGCC 1 cut(s) 391
BspCNI CTCAG 2 cut(s) 159, 355
BspDI ATCGAT 1 cut(s) 104
BspLI GGNNCC 5 cut(s) 12, 175, 391, 427, 472
BspPI GGATC 3 cut(s) 5, 18, 447
BspT107I GGYRCC 1 cut(s) 470
BsrFI RCCGGY 1 cut(s) 479
BssAI RCCGGY 1 cut(s) 479
BssECI CCNNGG 1 cut(s) 14
BssMI GATC 4 cut(s) 10, 68, 95, 439
Bst4CI ACNGT 2 cut(s) 283, 350
BstBAI YACGTR 1 cut(s) 259
BstDEI CTNAG 2 cut(s) 146, 342
BstF5I GGATG 1 cut(s) 412
BstH2I RGCGCY 1 cut(s) 212
BstHHI GCGC 1 cut(s) 211
BstKTI GATC 4 cut(s) 13, 71, 98, 442
BstMAI GTCTC 1 cut(s) 117
BstMBI GATC 4 cut(s) 10, 68, 95, 439
BstMWI GCNNNNNNNGC 1 cut(s) 397
BstSCI CCNGG 1 cut(s) 14
BstSLI GKGCMC 1 cut(s) 393
BstV1I GCAGC 2 cut(s) 149, 332
BstX2I RGATCY 2 cut(s) 10, 439
BstYI RGATCY 2 cut(s) 10, 439
Bsu15I ATCGAT 1 cut(s) 104
BsuRI GGCC 1 cut(s) 391
BsuTUI ATCGAT 1 cut(s) 104
BtsCI GGATG 1 cut(s) 412
BtsIMutI CAGTG 1 cut(s) 154
CfoI GCGC 1 cut(s) 211
Cfr10I RCCGGY 1 cut(s) 479
Cfr13I GGNCC 3 cut(s) 389, 390, 425
ClaI ATCGAT 1 cut(s) 104
Csp6I GTAC 1 cut(s) 471
CspAI ACCGGT 1 cut(s) 479
CviAII CATG 2 cut(s) 236, 403
CviJI RGCY 6 cut(s) 132, 174, 192, 356, 391, 400
CviKI_1 RGCY 6 cut(s) 132, 174, 192, 356, 391, 400
CviQI GTAC 1 cut(s) 471
DdeI CTNAG 2 cut(s) 146, 342
DpnI GATC 4 cut(s) 12, 70, 97, 441
DpnII GATC 4 cut(s) 10, 68, 95, 439
DraIII CACNNNGTG 1 cut(s) 285
DrdI GACNNNNNNGTC 1 cut(s) 185
DriI GACNNNNNGTC 1 cut(s) 78
DseDI GACNNNNNNGTC 1 cut(s) 185
Eam1105I GACNNNNNGTC 1 cut(s) 78
Eco24I GRGCYC 2 cut(s) 176, 393
Eco47I GGWCC 1 cut(s) 425
Eco72I CACGTG 1 cut(s) 259
EcoT22I ATGCAT 1 cut(s) 166
EcoT38I GRGCYC 2 cut(s) 176, 393
FaeI CATG 2 cut(s) 239, 406
FaiI YATR 7 cut(s) 50, 62, 129, 166, 237, 404, 494
FatI CATG 2 cut(s) 235, 402
Fnu4HI GCNGC 3 cut(s) 138, 207, 321
FokI GGATG 1 cut(s) 419
FriOI GRGCYC 2 cut(s) 176, 393
Fsp4HI GCNGC 3 cut(s) 138, 207, 321
FspBI CTAG 1 cut(s) 116
GlaI GCGC 1 cut(s) 210
GluI GCNGC 3 cut(s) 138, 207, 321
GsaI CCCAGC 1 cut(s) 215
HaeII RGCGCY 1 cut(s) 212
HaeIII GGCC 1 cut(s) 391
HapII CCGG 2 cut(s) 16, 480
HhaI GCGC 1 cut(s) 211
Hin1II CATG 2 cut(s) 239, 406
Hin6I GCGC 1 cut(s) 209
HinP1I GCGC 1 cut(s) 209
HinfI GANTC 3 cut(s) 19, 79, 144
HpaII CCGG 2 cut(s) 16, 480
HphI GGTGA 1 cut(s) 229
Hpy188I TCNGA 2 cut(s) 159, 178
Hpy188III TCNNGA 2 cut(s) 23, 344
Hpy99I CGWCG 5 cut(s) 76, 79, 182, 185, 425
HpyAV CCTTC 1 cut(s) 286
HpyCH4III ACNGT 2 cut(s) 283, 350
HpyCH4IV ACGT 1 cut(s) 258
HpyCH4V TGCA 2 cut(s) 164, 256
HpyF10VI GCNNNNNNNGC 1 cut(s) 397
HpyF3I CTNAG 2 cut(s) 146, 342
HpySE526I ACGT 1 cut(s) 258
Hsp92II CATG 2 cut(s) 239, 406
HspAI GCGC 1 cut(s) 209
KpnI GGTACC 1 cut(s) 474
Kzo9I GATC 4 cut(s) 10, 68, 95, 439
LmnI GCTCC 1 cut(s) 179
LpnPI CCDG 9 cut(s) 29, 79, 126, 154, 197, 207, 250, 329, 493
Lsp1109I GCAGC 2 cut(s) 149, 332
LweI GCATC 1 cut(s) 110
MaeI CTAG 1 cut(s) 116
MaeII ACGT 1 cut(s) 258
MaeIII GTNAC 2 cut(s) 335, 430
MalI GATC 4 cut(s) 12, 70, 97, 441
MboI GATC 4 cut(s) 10, 68, 95, 439
MboII GAAGA 1 cut(s) 301
MflI RGATCY 2 cut(s) 10, 439
MhlI GDGCHC 2 cut(s) 176, 393
MluCI AATT 2 cut(s) 298, 372
MlyI GAGTC 3 cut(s) 28, 88, 138
MmeI TCCRAC 1 cut(s) 201
MnlI CCTC 3 cut(s) 37, 219, 232
Mph1103I ATGCAT 1 cut(s) 166
MslI CAYNNNNRTG 1 cut(s) 240
MspI CCGG 2 cut(s) 16, 480
MspR9I CCNGG 1 cut(s) 16
Mva1269I GAATGC 1 cut(s) 166
MwoI GCNNNNNNNGC 1 cut(s) 397
NciI CCSGG 1 cut(s) 16
NdeII GATC 4 cut(s) 10, 68, 95, 439
NlaIII CATG 2 cut(s) 239, 406
NlaIV GGNNCC 5 cut(s) 12, 175, 391, 427, 472
NsiI ATGCAT 1 cut(s) 166
PctI GAATGC 1 cut(s) 166
PflFI GACNNNGTC 1 cut(s) 185
PinAI ACCGGT 1 cut(s) 479
PkrI GCNGC 3 cut(s) 139, 208, 322
PleI GAGTC 3 cut(s) 27, 87, 138
PmaCI CACGTG 1 cut(s) 259
PmlI CACGTG 1 cut(s) 259
PpsI GAGTC 3 cut(s) 27, 87, 138
Ppu21I YACGTR 1 cut(s) 259
PspCI CACGTG 1 cut(s) 259
PspFI CCCAGC 1 cut(s) 211
PspN4I GGNNCC 5 cut(s) 12, 175, 391, 427, 472
PspOMI GGGCCC 1 cut(s) 389
PspPI GGNCC 3 cut(s) 389, 390, 425
PsuI RGATCY 2 cut(s) 10, 439
PsyI GACNNNGTC 1 cut(s) 185
RsaI GTAC 1 cut(s) 472
RsaNI GTAC 1 cut(s) 471
RseI CAYNNNNRTG 1 cut(s) 240
SatI GCNGC 3 cut(s) 138, 207, 321
Sau3AI GATC 4 cut(s) 10, 68, 95, 439
Sau96I GGNCC 3 cut(s) 389, 390, 425
SchI GAGTC 3 cut(s) 28, 88, 138
ScrFI CCNGG 1 cut(s) 16
SduI GDGCHC 2 cut(s) 176, 393
SetI ASST 8 cut(s) 48, 201, 230, 253, 261, 329, 358, 472
SfaNI GCATC 1 cut(s) 110
SinI GGWCC 1 cut(s) 425
SmiMI CAYNNNNRTG 1 cut(s) 240
Sse9I AATT 2 cut(s) 298, 372
SsiI CCGC 2 cut(s) 57, 206
SspMI CTAG 1 cut(s) 116
StyD4I CCNGG 1 cut(s) 14
TaaI ACNGT 2 cut(s) 283, 350
TaiI ACGT 1 cut(s) 261
TaqI TCGA 2 cut(s) 71, 104
TasI AATT 2 cut(s) 298, 372
TauI GCSGC 1 cut(s) 209
TscAI CASTG 1 cut(s) 154
TseI GCWGC 2 cut(s) 137, 320
TspGWI ACGGA 2 cut(s) 438, 452
TspRI CASTG 1 cut(s) 154
Tth111I GACNNNGTC 1 cut(s) 185
VpaK11BI GGWCC 1 cut(s) 425
XapI RAATTY 1 cut(s) 298
XcmI CCANNNNNNNNNTGG 1 cut(s) 400
XspI CTAG 1 cut(s) 116
Zsp2I ATGCAT 1 cut(s) 166
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.