Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001093

Physical Location & Seq

Genomic Coordinates Reverse (-)

8911096 .. 8912822

Gene Structure 1727 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G25400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

ATGGAGGTCCCGATTATAAACAGAATAGGCGATTTTGACATGGGGATAAACTCGATAAACGACCCGTCGTATTTATCTCGAGCTTTGGCAGTCTCCGGTGTCGGAAAGTTACATCAAGCTTATAGTTTTTGGAAATGGGGCGCCTTATTGCTACTTGCATTTTTTGCTTCATTTACATCGTTAACTACAAGAATCAAGACTTTAGTCTTTAGATTAAGAAATGTAAACGTGTCTCTACCTTCCCAAACTCTTTTATGTAATTACGACAGCGACTCCGATTGGTCTTTCTCGTCAGACTCTTCAGACGAAGAGAAAGATGAGGACGATAACAAAGAAGATGACTCGGTCAATGGCGATTCACGCGTTCAAAGATTTGGTTATTACCATGATGATGATGATAAGGGTATTAGTGGAAGTGTCCCCTGGTTGCGGCGGTGCAGTGGTAGCTTCGGAGATTTGTTAGATTTAGGCTCAAGCGGAGTCGTGAAGCTTTGGGACAATCTTGATTTCAACGGAGAAGGAAGTCCGGTGGCTTCTTTTTTCAGCAAATGCGGCTCATACTCGTTATTGTCATCGGCGGTTTTATTAGCGGCGGAGAAGAAAGGATCCGACGGCTTGGAAGTGAGTGCGTGGGATGCACGCGTTGGTTTTGGGGTGCCCGCGTTGCTCGCGGAATGGAAGCAGCCGGGAAGGTTACTCGGGAAGATCATTAGGGTTGACGTAGGTGACGTGGACAAGATCTACGTCGGTGATGACGTCGAAGGAGAGATTACTGTGGGAGACATGAGGATGGTTAACGGTGCGTTGACGGAACTGACGGAATCAGAGGTTGAGAGGATGGTGAGAAGACGCAGACGCCGTCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

288

Amino Acids

31.87

Weight (kDa)

4.8

Isoelectric Point (pI)

39.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001093)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G25400 AT1G25400 AT1G68440
fragaria_vesca	FvH4_4g27210 FvH4_5g09320 FvH4_5g18320 FvH4_5g36190 FvH4_5g36660 FvH4_6g02080 FvH4_6g18410 FvH4_6g37922 FvH4_6g48101
malus_domestica	MD13G1040500.v1.1 MD16G1041500.v1.1
prunus_persica	Prupe.1G312600_v2.0.a1
pyrus_communis	pycom13g03470 pycom16g03590
rosa_chinensis	RchiOBHm_Chr2g0089781 RchiOBHm_Chr2g0161601 RchiOBHm_Chr4g0435001 RchiOBHm_Chr5g0057351 RchiOBHm_Chr6g0279821 RchiOBHm_Chr7g0227101
rosa_laevigata	RLG00000006630 RLG00000007926
rosa_multiflora	Rmu_co7981798.1_g000001 Rmu_co8240437.1_g000001 Rmu_sc0000400.1_g000034 Rmu_sc0000869.1_g000026 Rmu_sc0001246.1_g000017 Rmu_sc0002430.1_g000001 Rmu_sc0004574.1_g000051 Rmu_sc0009868.1_g000002 Rmu_sc0010765.1_g000001
rosa_roxburghii	Rroxscaffold_1G00019050 Rroxscaffold_2G00088100 Rroxscaffold_5G00376170
rosa_rugosa	Rorug02G0108200 Rorug02G0398300 Rorug02G0435100 Rorug03G0104500 Rorug03G0112000 Rorug03G0209100 Rorug04G0021800 Rorug04G0169800 Rorug04G0281500 Rorug04G0390300 Rorug05G0263200 Rorug05G0281200 Rorug06G0472700 Rorug07G0039700 Rorug07G0207300
rosa_samantha	Rh4AG337000 Rh4BG161500 Rh4BG344900 Rh4CG359600 Rh4DG339400 Rh5DG431200
rosa_wichuraiana	Rw4G029380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	17
AatII	GACGTC	1 cut(s)	759
AccB1I	GGYRCC	2 cut(s)	140, 655
AccII	CGCG	4 cut(s)	363, 642, 662, 671
AciI	CCGC	9 cut(s)	430, 433, 477, 552, 578, 590, 593, 660, 671
AclWI	GGATC	2 cut(s)	600, 613
AcuI	CTGAAG	1 cut(s)	285
AcyI	GRCGYC	3 cut(s)	141, 756, 856
AfiI	CCNNNNNNNGG	1 cut(s)	429
AflIII	ACRYGT	3 cut(s)	228, 361, 640
AgsI	TTSAA	2 cut(s)	368, 511
AjiI	CACGTC	1 cut(s)	730
AjnI	CCWGG	1 cut(s)	422
AluBI	AGCT	4 cut(s)	83, 119, 447, 490
AluI	AGCT	4 cut(s)	83, 119, 447, 490
Alw26I	GTCTC	3 cut(s)	97, 237, 774
AlwI	GGATC	2 cut(s)	600, 613
Ama87I	CYCGRG	2 cut(s)	78, 698
ApeKI	GCWGC	1 cut(s)	682
AspLEI	GCGC	1 cut(s)	143
AspS9I	GGNCC	1 cut(s)	7
AsuC2I	CCSGG	1 cut(s)	687
AsuHPI	GGTGA	3 cut(s)	737, 761, 853
AvaI	CYCGRG	2 cut(s)	78, 698
AvaII	GGWCC	1 cut(s)	7
BaeGI	GKGCMC	1 cut(s)	660
BamHI	GGATCC	1 cut(s)	605
BanI	GGYRCC	2 cut(s)	140, 655
BbsI	GAAGAC	1 cut(s)	853
BbvI	GCAGC	1 cut(s)	694
BccI	CCATC	2 cut(s)	784, 832
BceAI	ACGGC	2 cut(s)	628, 843
BciT130I	CCWGG	1 cut(s)	424
BcnI	CCSGG	1 cut(s)	687
BcoDI	GTCTC	3 cut(s)	97, 237, 774
BfoI	RGCGCY	1 cut(s)	144
BglII	AGATCT	1 cut(s)	738
BisI	GCNGC	4 cut(s)	431, 553, 591, 683
BlsI	GCNGC	4 cut(s)	432, 554, 592, 684
Bme1390I	CCNGG	2 cut(s)	424, 687
Bme18I	GGWCC	1 cut(s)	7
BmeT110I	CYCGRG	2 cut(s)	78, 698
BmgBI	CACGTC	1 cut(s)	730
BmgT120I	GGNCC	1 cut(s)	7
BmiI	GGNNCC	4 cut(s)	9, 142, 607, 657
BmrFI	CCNGG	2 cut(s)	424, 687
BmsI	GCATC	1 cut(s)	625
BoxI	GACNNNNGTC	1 cut(s)	203
BpiI	GAAGAC	1 cut(s)	853
BpuEI	CTTGAG	1 cut(s)	457
BpuMI	CCSGG	1 cut(s)	687
BsaHI	GRCGYC	3 cut(s)	141, 756, 856
BsaJI	CCNNGG	1 cut(s)	422
BsaWI	WCCGGW	2 cut(s)	95, 526
BsaXI	ACNNNNNCTCC	2 cut(s)	257, 287
Bsc4I	CCNNNNNNNGG	1 cut(s)	429
BseBI	CCWGG	1 cut(s)	424
BseDI	CCNNGG	1 cut(s)	422
BseGI	GGATG	3 cut(s)	640, 795, 843
BseLI	CCNNNNNNNGG	1 cut(s)	429
BseSI	GKGCMC	1 cut(s)	660
BseXI	GCAGC	1 cut(s)	694
BsgI	GTGCAG	1 cut(s)	457
Bsh1236I	CGCG	4 cut(s)	363, 642, 662, 671
BshNI	GGYRCC	2 cut(s)	140, 655
BsiHKCI	CYCGRG	2 cut(s)	78, 698
BsiSI	CCGG	3 cut(s)	96, 527, 686
BslFI	GGGAC	2 cut(s)	404, 509
BslI	CCNNNNNNNGG	1 cut(s)	429
BsmAI	GTCTC	3 cut(s)	97, 237, 774
BsmFI	GGGAC	2 cut(s)	404, 509
BsoBI	CYCGRG	2 cut(s)	78, 698
Bsp1286I	GDGCHC	1 cut(s)	660
Bsp143I	GATC	3 cut(s)	605, 705, 738
BspACI	CCGC	9 cut(s)	430, 433, 477, 552, 578, 590, 593, 660, 671
BspFNI	CGCG	4 cut(s)	363, 642, 662, 671
BspLI	GGNNCC	4 cut(s)	9, 142, 607, 657
BspPI	GGATC	2 cut(s)	600, 613
BspT107I	GGYRCC	2 cut(s)	140, 655
BssECI	CCNNGG	1 cut(s)	422
BssMI	GATC	3 cut(s)	605, 705, 738
BssNI	GRCGYC	3 cut(s)	141, 756, 856
Bst2UI	CCWGG	1 cut(s)	424
Bst4CI	ACNGT	2 cut(s)	775, 800
Bst6I	CTCTTC	2 cut(s)	303, 304
BstACI	GRCGYC	3 cut(s)	141, 756, 856
BstAPI	GCANNNNNTGC	1 cut(s)	164
BstC8I	GCNNGC	3 cut(s)	640, 660, 669
BstF5I	GGATG	3 cut(s)	640, 795, 843
BstFNI	CGCG	4 cut(s)	363, 642, 662, 671
BstH2I	RGCGCY	1 cut(s)	144
BstHHI	GCGC	1 cut(s)	143
BstKTI	GATC	3 cut(s)	608, 708, 741
BstMAI	GTCTC	3 cut(s)	97, 237, 774
BstMBI	GATC	3 cut(s)	605, 705, 738
BstMWI	GCNNNNNNNGC	7 cut(s)	164, 360, 444, 552, 635, 664, 668
BstNI	CCWGG	1 cut(s)	424
BstPAI	GACNNNNGTC	1 cut(s)	203
BstSCI	CCNGG	2 cut(s)	422, 685
BstSLI	GKGCMC	1 cut(s)	660
BstUI	CGCG	4 cut(s)	363, 642, 662, 671
BstV1I	GCAGC	1 cut(s)	694
BstV2I	GAAGAC	1 cut(s)	853
BstX2I	RGATCY	2 cut(s)	605, 738
BstYI	RGATCY	2 cut(s)	605, 738
BtrI	CACGTC	1 cut(s)	730
BtsCI	GGATG	3 cut(s)	640, 795, 843
BtsI	GCAGTG	1 cut(s)	445
BtsIMutI	CAGTG	1 cut(s)	445
Cac8I	GCNNGC	3 cut(s)	640, 660, 669
CfoI	GCGC	1 cut(s)	143
Cfr13I	GGNCC	1 cut(s)	7
CseI	GACGC	1 cut(s)	858
CviAII	CATG	3 cut(s)	40, 386, 784
CviJI	RGCY	9 cut(s)	83, 119, 447, 471, 490, 533, 555, 615, 685
CviKI_1	RGCY	9 cut(s)	83, 119, 447, 471, 490, 533, 555, 615, 685
DinI	GGCGCC	1 cut(s)	142
DpnI	GATC	3 cut(s)	607, 707, 740
DpnII	GATC	3 cut(s)	605, 705, 738
Eam1104I	CTCTTC	2 cut(s)	303, 304
EarI	CTCTTC	2 cut(s)	303, 304
EciI	GGCGGA	1 cut(s)	608
Eco47I	GGWCC	1 cut(s)	7
Eco57I	CTGAAG	1 cut(s)	285
Eco88I	CYCGRG	2 cut(s)	78, 698
EcoO109I	RGGNCCY	1 cut(s)	7
EcoRII	CCWGG	1 cut(s)	422
EgeI	GGCGCC	1 cut(s)	142
EheI	GGCGCC	1 cut(s)	142
FaeI	CATG	3 cut(s)	43, 389, 787
FaiI	YATR	7 cut(s)	17, 41, 123, 256, 387, 559, 785
FaqI	GGGAC	2 cut(s)	404, 509
FatI	CATG	3 cut(s)	39, 385, 783
FauI	CCCGC	1 cut(s)	667
Fnu4HI	GCNGC	4 cut(s)	431, 553, 591, 683
FokI	GGATG	3 cut(s)	647, 802, 850
Fsp4HI	GCNGC	4 cut(s)	431, 553, 591, 683
GlaI	GCGC	1 cut(s)	142
GluI	GCNGC	4 cut(s)	431, 553, 591, 683
HaeII	RGCGCY	1 cut(s)	144
HapII	CCGG	3 cut(s)	96, 527, 686
HgaI	GACGC	1 cut(s)	858
HhaI	GCGC	1 cut(s)	143
Hin1I	GRCGYC	3 cut(s)	141, 756, 856
Hin1II	CATG	3 cut(s)	43, 389, 787
Hin6I	GCGC	1 cut(s)	141
HinP1I	GCGC	1 cut(s)	141
HincII	GTYRAC	4 cut(s)	183, 718, 796, 807
HindII	GTYRAC	4 cut(s)	183, 718, 796, 807
HindIII	AAGCTT	2 cut(s)	117, 488
HinfI	GANTC	7 cut(s)	192, 272, 296, 341, 356, 480, 821
HpaI	GTTAAC	2 cut(s)	183, 796
HpaII	CCGG	3 cut(s)	96, 527, 686
HphI	GGTGA	3 cut(s)	737, 761, 853
Hpy166II	GTNNAC	6 cut(s)	183, 226, 718, 733, 796, 807
Hpy188I	TCNGA	7 cut(s)	104, 277, 295, 304, 452, 610, 826
Hpy188III	TCNNGA	6 cut(s)	10, 78, 196, 484, 503, 700
Hpy8I	GTNNAC	6 cut(s)	183, 226, 718, 733, 796, 807
Hpy99I	CGWCG	4 cut(s)	70, 614, 749, 761
HpyAV	CCTTC	4 cut(s)	249, 512, 684, 755
HpyCH4III	ACNGT	2 cut(s)	775, 800
HpyCH4IV	ACGT	5 cut(s)	228, 720, 729, 744, 756
HpyCH4V	TGCA	3 cut(s)	158, 438, 638
HpyF10VI	GCNNNNNNNGC	7 cut(s)	164, 360, 444, 552, 635, 664, 668
HpySE526I	ACGT	5 cut(s)	228, 720, 729, 744, 756
Hsp92I	GRCGYC	3 cut(s)	141, 756, 856
Hsp92II	CATG	3 cut(s)	43, 389, 787
HspAI	GCGC	1 cut(s)	141
KasI	GGCGCC	1 cut(s)	140
KspAI	GTTAAC	2 cut(s)	183, 796
Kzo9I	GATC	3 cut(s)	605, 705, 738
LpnPI	CCDG	5 cut(s)	109, 409, 436, 540, 699
Lsp1109I	GCAGC	1 cut(s)	694
LweI	GCATC	1 cut(s)	625
MaeII	ACGT	5 cut(s)	228, 720, 729, 744, 756
MaeIII	GTNAC	3 cut(s)	108, 693, 725
MalI	GATC	3 cut(s)	607, 707, 740
MboI	GATC	3 cut(s)	605, 705, 738
MboII	GAAGA	6 cut(s)	291, 320, 347, 610, 715, 858
MflI	RGATCY	2 cut(s)	605, 738
MhlI	GDGCHC	1 cut(s)	660
MluCI	AATT	1 cut(s)	259
MluI	ACGCGT	2 cut(s)	361, 640
Mly113I	GGCGCC	1 cut(s)	141
MlyI	GAGTC	4 cut(s)	266, 290, 335, 489
MmeI	TCCRAC	2 cut(s)	82, 633
MnlI	CCTC	4 cut(s)	313, 780, 820, 828
MseI	TTAA	3 cut(s)	182, 215, 795
MslI	CAYNNNNRTG	2 cut(s)	390, 788
MspI	CCGG	3 cut(s)	96, 527, 686
MspR9I	CCNGG	2 cut(s)	424, 687
MvaI	CCWGG	1 cut(s)	424
MvnI	CGCG	4 cut(s)	363, 642, 662, 671
MwoI	GCNNNNNNNGC	7 cut(s)	164, 360, 444, 552, 635, 664, 668
NarI	GGCGCC	1 cut(s)	141
NciI	CCSGG	1 cut(s)	687
NdeII	GATC	3 cut(s)	605, 705, 738
NlaIII	CATG	3 cut(s)	43, 389, 787
NlaIV	GGNNCC	4 cut(s)	9, 142, 607, 657
NmuCI	GTSAC	1 cut(s)	725
PaeR7I	CTCGAG	1 cut(s)	78
PcsI	WCGNNNNNNNCGW	3 cut(s)	726, 753, 856
PfeI	GAWTC	3 cut(s)	192, 356, 821
PflFI	GACNNNGTC	2 cut(s)	344, 858
PkrI	GCNGC	4 cut(s)	432, 554, 592, 684
PleI	GAGTC	4 cut(s)	266, 290, 335, 488
PluTI	GGCGCC	1 cut(s)	144
PpsI	GAGTC	4 cut(s)	266, 290, 335, 488
PpuMI	RGGWCCY	1 cut(s)	7
PshAI	GACNNNNGTC	1 cut(s)	203
PsiI	TTATAA	1 cut(s)	17
Psp5II	RGGWCCY	1 cut(s)	7
Psp6I	CCWGG	1 cut(s)	422
PspGI	CCWGG	1 cut(s)	422
PspN4I	GGNNCC	4 cut(s)	9, 142, 607, 657
PspPI	GGNCC	1 cut(s)	7
PspPPI	RGGWCCY	1 cut(s)	7
PsuI	RGATCY	2 cut(s)	605, 738
PsyI	GACNNNGTC	2 cut(s)	344, 858
RseI	CAYNNNNRTG	2 cut(s)	390, 788
SaqAI	TTAA	3 cut(s)	182, 215, 795
SatI	GCNGC	4 cut(s)	431, 553, 591, 683
Sau3AI	GATC	3 cut(s)	605, 705, 738
Sau96I	GGNCC	1 cut(s)	7
SchI	GAGTC	4 cut(s)	266, 290, 335, 489
ScrFI	CCNGG	2 cut(s)	424, 687
SduI	GDGCHC	1 cut(s)	660
SfaNI	GCATC	1 cut(s)	625
SfoI	GGCGCC	1 cut(s)	142
Sfr274I	CTCGAG	1 cut(s)	78
SinI	GGWCC	1 cut(s)	7
SlaI	CTCGAG	1 cut(s)	78
SmiMI	CAYNNNNRTG	2 cut(s)	390, 788
SmlI	CTYRAG	2 cut(s)	78, 472
SmoI	CTYRAG	2 cut(s)	78, 472
Sse9I	AATT	1 cut(s)	259
SsiI	CCGC	9 cut(s)	430, 433, 477, 552, 578, 590, 593, 660, 671
SspDI	GGCGCC	1 cut(s)	140
StyD4I	CCNGG	2 cut(s)	422, 685
TaaI	ACNGT	2 cut(s)	775, 800
TaiI	ACGT	5 cut(s)	231, 723, 732, 747, 759
TaqI	TCGA	3 cut(s)	53, 79, 759
TaqII	GACCGA	1 cut(s)	334
TasI	AATT	1 cut(s)	259
TauI	GCSGC	3 cut(s)	433, 555, 593
TfiI	GAWTC	3 cut(s)	192, 356, 821
Tru1I	TTAA	3 cut(s)	182, 215, 795
Tru9I	TTAA	3 cut(s)	182, 215, 795
TscAI	CASTG	1 cut(s)	445
TseFI	GTSAC	1 cut(s)	725
TseI	GCWGC	1 cut(s)	682
Tsp45I	GTSAC	1 cut(s)	725
TspDTI	ATGAA	1 cut(s)	159
TspGWI	ACGGA	3 cut(s)	528, 824, 833
TspRI	CASTG	1 cut(s)	445
Tth111I	GACNNNGTC	2 cut(s)	344, 858
VpaK11BI	GGWCC	1 cut(s)	7
XhoI	CTCGAG	1 cut(s)	78
ZraI	GACGTC	1 cut(s)	757

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.