Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0001093

Physical Location & Seq

Genomic Coordinates Reverse (-)

26886878 .. 26887774

Gene Structure 897 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g36660.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGGATGGAGAGAGGAAGTTTGCAGGTGGTTGGTGGTCTGATACCTGTTGGCTGGTATGGATGGTAGAGCGGGCTAGAGCGGCGGCGATTTCAAATTGGCTGATGGATCATCGATGTGGAGTGGTAGCGCATGGCTGGAGGTGGACCGAAGATGGGCAGGTCGAGACGGAGCCATTTTGCTTGGGTTGGTTTGACCAAATCTGGGTTCGGTTGCACAGTTTCGATTTGTGGAAGGACTGCGTTGGAGGTTGCGTTGCCTTTTTATGGCGAGAAGCGAAGGTTGGAAGGTTGCCGGCGATAGCTCGACCAAGGCGGCGGAGCAAGACTGCTAGTGCTCTGATGAGGTGGGCCAACGAAGACACGGTGTTGAAGAAGGATAATTGGCTCGGTTTATTGTTGGTGACAAGGTTGTATCGTGACTCTCAGGCTTTGGTAGCTCATGTTGAGCGTCAAATTTGGTTAGGGGTTGGGCCCTTTCGGCTCATGGATGTTGCTTTTAGTGACGGACCCGTAACTATGGATCTTGTTAGGAATGTGTGTTATGGTGTAGGCATCATAACCGATCGTTCCATTGTGCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

194

Amino Acids

22.25

Weight (kDa)

8.6

Isoelectric Point (pI)

39.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001093)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G25400 AT1G25400 AT1G68440
fragaria_vesca	FvH4_4g27210 FvH4_5g09320 FvH4_5g18320 FvH4_5g36190 FvH4_5g36660 FvH4_6g02080 FvH4_6g18410 FvH4_6g37922 FvH4_6g48101
malus_domestica	MD13G1040500.v1.1 MD16G1041500.v1.1
prunus_persica	Prupe.1G312600_v2.0.a1
pyrus_communis	pycom13g03470 pycom16g03590
rosa_chinensis	RchiOBHm_Chr2g0089781 RchiOBHm_Chr2g0161601 RchiOBHm_Chr4g0435001 RchiOBHm_Chr5g0057351 RchiOBHm_Chr6g0279821 RchiOBHm_Chr7g0227101
rosa_laevigata	RLG00000006630 RLG00000007926
rosa_multiflora	Rmu_co7981798.1_g000001 Rmu_co8240437.1_g000001 Rmu_sc0000400.1_g000034 Rmu_sc0000869.1_g000026 Rmu_sc0001246.1_g000017 Rmu_sc0002430.1_g000001 Rmu_sc0004574.1_g000051 Rmu_sc0009868.1_g000002 Rmu_sc0010765.1_g000001
rosa_roxburghii	Rroxscaffold_1G00019050 Rroxscaffold_2G00088100 Rroxscaffold_5G00376170
rosa_rugosa	Rorug02G0108200 Rorug02G0398300 Rorug02G0435100 Rorug03G0104500 Rorug03G0112000 Rorug03G0209100 Rorug04G0021800 Rorug04G0169800 Rorug04G0281500 Rorug04G0390300 Rorug05G0263200 Rorug05G0281200 Rorug06G0472700 Rorug07G0039700 Rorug07G0207300
rosa_samantha	Rh4AG337000 Rh4BG161500 Rh4BG344900 Rh4CG359600 Rh4DG339400 Rh5DG431200
rosa_wichuraiana	Rw4G029380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	14
Acc36I	ACCTGC	2 cut(s)	14, 148
AccBSI	CCGCTC	2 cut(s)	70, 80
AciI	CCGC	5 cut(s)	70, 80, 83, 313, 316
AclWI	GGATC	2 cut(s)	114, 528
AcsI	RAATTY	1 cut(s)	453
AfiI	CCNNNNNNNGG	3 cut(s)	153, 202, 264
AgsI	TTSAA	2 cut(s)	93, 370
AjuI	GAANNNNNNNTTGG	4 cut(s)	189, 221, 264, 296
AluBI	AGCT	2 cut(s)	302, 437
AluI	AGCT	2 cut(s)	302, 437
Alw21I	GWGCWC	1 cut(s)	337
Alw26I	GTCTC	1 cut(s)	158
AlwI	GGATC	2 cut(s)	114, 528
AoxI	GGCC	2 cut(s)	348, 470
ApaI	GGGCCC	1 cut(s)	474
ApoI	RAATTY	1 cut(s)	453
AspLEI	GCGC	1 cut(s)	130
AspS9I	GGNCC	5 cut(s)	144, 348, 470, 471, 506
AsuHPI	GGTGA	1 cut(s)	412
AvaII	GGWCC	2 cut(s)	144, 506
BaeGI	GKGCMC	1 cut(s)	474
BanII	GRGCYC	1 cut(s)	474
BbsI	GAAGAC	1 cut(s)	363
Bbv12I	GWGCWC	1 cut(s)	337
BccI	CCATC	3 cut(s)	55, 97, 146
BcoDI	GTCTC	1 cut(s)	158
BfaI	CTAG	2 cut(s)	75, 330
BfuAI	ACCTGC	2 cut(s)	14, 148
BglI	GCCNNNNNGGC	1 cut(s)	478
BisI	GCNGC	3 cut(s)	81, 84, 314
BlsI	GCNGC	3 cut(s)	82, 85, 315
Bme18I	GGWCC	2 cut(s)	144, 506
BmgT120I	GGNCC	5 cut(s)	144, 348, 470, 471, 506
BmiI	GGNNCC	3 cut(s)	171, 472, 508
BmsI	GCATC	1 cut(s)	561
BpiI	GAAGAC	1 cut(s)	363
BpmI	CTGGAG	1 cut(s)	157
Bsa29I	ATCGAT	1 cut(s)	112
BsaJI	CCNNGG	1 cut(s)	308
BsaXI	ACNNNNNCTCC	2 cut(s)	237, 267
Bsc4I	CCNNNNNNNGG	3 cut(s)	153, 202, 264
Bse118I	RCCGGY	1 cut(s)	292
BseCI	ATCGAT	1 cut(s)	112
BseDI	CCNNGG	1 cut(s)	308
BseGI	GGATG	3 cut(s)	10, 66, 493
BseLI	CCNNNNNNNGG	3 cut(s)	153, 202, 264
BseMII	CTCAG	1 cut(s)	437
BseSI	GKGCMC	1 cut(s)	474
Bsh1285I	CGRYCG	1 cut(s)	565
BshFI	GGCC	2 cut(s)	350, 472
BshVI	ATCGAT	1 cut(s)	112
BsiEI	CGRYCG	1 cut(s)	565
BsiHKAI	GWGCWC	1 cut(s)	337
BsiSI	CCGG	1 cut(s)	293
BslI	CCNNNNNNNGG	3 cut(s)	153, 202, 264
BsmAI	GTCTC	1 cut(s)	158
BsmBI	CGTCTC	1 cut(s)	158
BsnI	GGCC	2 cut(s)	350, 472
Bsp120I	GGGCCC	1 cut(s)	470
Bsp1286I	GDGCHC	2 cut(s)	337, 474
Bsp143I	GATC	3 cut(s)	106, 520, 562
BspACI	CCGC	5 cut(s)	70, 80, 83, 313, 316
BspANI	GGCC	2 cut(s)	350, 472
BspCNI	CTCAG	1 cut(s)	436
BspDI	ATCGAT	1 cut(s)	112
BspLI	GGNNCC	3 cut(s)	171, 472, 508
BspMI	ACCTGC	2 cut(s)	14, 148
BspPI	GGATC	2 cut(s)	114, 528
BsrBI	CCGCTC	2 cut(s)	70, 80
BsrFI	RCCGGY	1 cut(s)	292
BssAI	RCCGGY	1 cut(s)	292
BssECI	CCNNGG	1 cut(s)	308
BssMI	GATC	3 cut(s)	106, 520, 562
BssT1I	CCWWGG	1 cut(s)	308
Bst4CI	ACNGT	2 cut(s)	218, 364
BstC8I	GCNNGC	2 cut(s)	72, 294
BstDEI	CTNAG	1 cut(s)	423
BstF5I	GGATG	3 cut(s)	10, 66, 493
BstHHI	GCGC	1 cut(s)	130
BstKTI	GATC	3 cut(s)	109, 523, 565
BstMAI	GTCTC	1 cut(s)	158
BstMBI	GATC	3 cut(s)	106, 520, 562
BstMCI	CGRYCG	1 cut(s)	565
BstMWI	GCNNNNNNNGC	3 cut(s)	80, 434, 478
BstSLI	GKGCMC	1 cut(s)	474
BstV2I	GAAGAC	1 cut(s)	363
BstX2I	RGATCY	1 cut(s)	520
BstYI	RGATCY	1 cut(s)	520
Bsu15I	ATCGAT	1 cut(s)	112
BsuRI	GGCC	2 cut(s)	350, 472
BsuTUI	ATCGAT	1 cut(s)	112
BtsCI	GGATG	3 cut(s)	10, 66, 493
BveI	ACCTGC	2 cut(s)	14, 148
Cac8I	GCNNGC	2 cut(s)	72, 294
CfoI	GCGC	1 cut(s)	130
Cfr10I	RCCGGY	1 cut(s)	292
Cfr13I	GGNCC	5 cut(s)	144, 348, 470, 471, 506
ClaI	ATCGAT	1 cut(s)	112
CseI	GACGC	1 cut(s)	437
CviAII	CATG	3 cut(s)	131, 440, 484
DdeI	CTNAG	1 cut(s)	423
DpnI	GATC	3 cut(s)	108, 522, 564
DpnII	GATC	3 cut(s)	106, 520, 562
EciI	GGCGGA	1 cut(s)	331
Eco130I	CCWWGG	1 cut(s)	308
Eco24I	GRGCYC	1 cut(s)	474
Eco47I	GGWCC	2 cut(s)	144, 506
EcoO109I	RGGNCCY	1 cut(s)	471
EcoT14I	CCWWGG	1 cut(s)	308
EcoT38I	GRGCYC	1 cut(s)	474
ErhI	CCWWGG	1 cut(s)	308
Esp3I	CGTCTC	1 cut(s)	158
FaeI	CATG	3 cut(s)	134, 443, 487
FaiI	YATR	8 cut(s)	58, 132, 265, 441, 485, 518, 543, 557
FatI	CATG	3 cut(s)	130, 439, 483
FauI	CCCGC	1 cut(s)	63
Fnu4HI	GCNGC	3 cut(s)	81, 84, 314
FokI	GGATG	3 cut(s)	17, 73, 500
FriOI	GRGCYC	1 cut(s)	474
Fsp4HI	GCNGC	3 cut(s)	81, 84, 314
FspBI	CTAG	2 cut(s)	75, 330
GlaI	GCGC	1 cut(s)	129
GluI	GCNGC	3 cut(s)	81, 84, 314
GsuI	CTGGAG	1 cut(s)	157
HaeIII	GGCC	2 cut(s)	350, 472
HapII	CCGG	1 cut(s)	293
HgaI	GACGC	1 cut(s)	437
HhaI	GCGC	1 cut(s)	130
Hin1II	CATG	3 cut(s)	134, 443, 487
Hin6I	GCGC	1 cut(s)	128
HinP1I	GCGC	1 cut(s)	128
HinfI	GANTC	1 cut(s)	419
HpaII	CCGG	1 cut(s)	293
HphI	GGTGA	1 cut(s)	412
Hpy166II	GTNNAC	1 cut(s)	144
Hpy188I	TCNGA	2 cut(s)	40, 339
Hpy188III	TCNNGA	2 cut(s)	163, 416
Hpy8I	GTNNAC	1 cut(s)	144
HpyAV	CCTTC	4 cut(s)	226, 271, 279, 367
HpyCH4III	ACNGT	2 cut(s)	218, 364
HpyCH4V	TGCA	2 cut(s)	23, 214
HpyF10VI	GCNNNNNNNGC	3 cut(s)	80, 434, 478
HpyF3I	CTNAG	1 cut(s)	423
Hsp92II	CATG	3 cut(s)	134, 443, 487
HspAI	GCGC	1 cut(s)	128
KroI	GCCGGC	1 cut(s)	292
KroNI	GCCGGC	1 cut(s)	294
Kzo9I	GATC	3 cut(s)	106, 520, 562
LmnI	GCTCC	2 cut(s)	169, 318
LpnPI	CCDG	8 cut(s)	9, 38, 58, 121, 143, 187, 306, 410
LweI	GCATC	1 cut(s)	561
MaeI	CTAG	2 cut(s)	75, 330
MaeIII	GTNAC	4 cut(s)	400, 416, 500, 511
MalI	GATC	3 cut(s)	108, 522, 564
MbiI	CCGCTC	2 cut(s)	70, 80
MboI	GATC	3 cut(s)	106, 520, 562
MboII	GAAGA	3 cut(s)	161, 368, 382
MflI	RGATCY	1 cut(s)	520
MhlI	GDGCHC	2 cut(s)	337, 474
MluCI	AATT	3 cut(s)	94, 379, 453
MlyI	GAGTC	1 cut(s)	413
MmeI	TCCRAC	2 cut(s)	223, 262
MnlI	CCTC	4 cut(s)	6, 132, 239, 336
MroNI	GCCGGC	1 cut(s)	292
MslI	CAYNNNNRTG	1 cut(s)	114
MspI	CCGG	1 cut(s)	293
MwoI	GCNNNNNNNGC	3 cut(s)	80, 434, 478
NaeI	GCCGGC	1 cut(s)	294
NdeII	GATC	3 cut(s)	106, 520, 562
NgoMIV	GCCGGC	1 cut(s)	292
NlaIII	CATG	3 cut(s)	134, 443, 487
NlaIV	GGNNCC	3 cut(s)	171, 472, 508
NmuCI	GTSAC	3 cut(s)	400, 416, 500
PaqCI	CACCTGC	1 cut(s)	14
PdiI	GCCGGC	1 cut(s)	294
PkrI	GCNGC	3 cut(s)	82, 85, 315
Ple19I	CGATCG	1 cut(s)	565
PleI	GAGTC	1 cut(s)	413
PpsI	GAGTC	1 cut(s)	413
PspN4I	GGNNCC	3 cut(s)	171, 472, 508
PspOMI	GGGCCC	1 cut(s)	470
PspPI	GGNCC	5 cut(s)	144, 348, 470, 471, 506
PsuI	RGATCY	1 cut(s)	520
PvuI	CGATCG	1 cut(s)	565
RseI	CAYNNNNRTG	1 cut(s)	114
SatI	GCNGC	3 cut(s)	81, 84, 314
Sau3AI	GATC	3 cut(s)	106, 520, 562
Sau96I	GGNCC	5 cut(s)	144, 348, 470, 471, 506
SchI	GAGTC	1 cut(s)	413
SduI	GDGCHC	2 cut(s)	337, 474
SfaNI	GCATC	1 cut(s)	561
SinI	GGWCC	2 cut(s)	144, 506
SmiMI	CAYNNNNRTG	1 cut(s)	114
Sse9I	AATT	3 cut(s)	94, 379, 453
SsiI	CCGC	5 cut(s)	70, 80, 83, 313, 316
SspMI	CTAG	2 cut(s)	75, 330
StyI	CCWWGG	1 cut(s)	308
TaaI	ACNGT	2 cut(s)	218, 364
TaqI	TCGA	4 cut(s)	112, 162, 222, 304
TaqII	GACCGA	1 cut(s)	161
TasI	AATT	3 cut(s)	94, 379, 453
TauI	GCSGC	3 cut(s)	83, 86, 316
TseFI	GTSAC	3 cut(s)	400, 416, 500
Tsp45I	GTSAC	3 cut(s)	400, 416, 500
TspGWI	ACGGA	2 cut(s)	182, 519
VpaK11BI	GGWCC	2 cut(s)	144, 506
XapI	RAATTY	1 cut(s)	453
XspI	CTAG	2 cut(s)	75, 330

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.