RchiOBHm_Chr5g0057351

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0001093
Physical Location & Seq
Forward (+)
61291594 .. 61292478
885 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ33413

Sequence Viewer

Length: 885 bp
ATGGATCTCTGGCGGAGGCCTGGTTCACGGATGGTGGAAGGTGGTTTGACGTTGGACGGGGCAGATCGGGTGAGATCTCCTCCCCTTGGGTCATGGGTGAGATCTGACAAGGAACAGCGAAGGGGTGATTGCCAGCGGCTGTTCCTGGCGTCACGGATGGTTCAGGGTGTACGGAGGTGGCTGGGGCTTCGATCCCAGGGCAGGGACGAGCTCGGAGATGGTTCGCCCCTTTCTGGGCTTCAATCTCGGACATCGACCAGGTTTGGGGGTGGCCGGCTTTGTGGTGCGGCGATGCGGTGGCGTAGGAATACGTTGCTGCAACGTGGTGGTGCAAGGCGGCGGTGTGGTGACGATGGAGAATGCTGGCAGCAAGTTTGGAGGAGGGCGGCGATAGTTCCTTGCGGGAAGTGGAGGTTGGGCCGGGCCGCCGTGTTTGGTCAATTTTTTATTAGGATTTTAGTTTCAGGTTTTTGGTTAGGTCAAATAAAACGTCCCTACTCAATTGAGCTAGGGTTTGGAGGTTTTGGTCGTGTTGTGGAGCCATCTATATGGTGTTACTCCTGGGAACAATATGGTAGAATTTCGATGCTGTTTGGTTATCAACGGAAAGGTGGATTTCCCTTGCACGTGGTCTGGCGGTTTATGGACACGGTGTGGAAGAGGGTGGAGTGGTTCGTCTGGCTGTTGGTGACGAGGTCGTATCGTGACACTCGGGATTGGTTATCTTTCTTTGTAGCCTGGGGTGATAGGCGTAAAAATTGGTTAGGGGTTGGACCTTTTCGGTTCATGGATGTTACTATTAGTGACGGACCCATAACTATGGATCTTGGTAGGAATATGTGTCGTGGTGTTGATACCACAACCGATTATTCCAATGCTTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

294

Amino Acids

34.03

Weight (kDa)

11.02

Isoelectric Point (pI)

53.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 3 cut(s) 12, 186, 831
AcoI YGGCCR 1 cut(s) 271
AcsI RAATTY 1 cut(s) 579
AcvI CACGTG 1 cut(s) 628
AcyI GRCGYC 1 cut(s) 149
AdeI CACNNNGTG 1 cut(s) 654
AfaI GTAC 1 cut(s) 171
AfiI CCNNNNNNNGG 6 cut(s) 86, 201, 202, 233, 234, 264
AgsI TTSAA 1 cut(s) 242
AjnI CCWGG 6 cut(s) 19, 144, 195, 257, 560, 737
AjuI GAANNNNNNNTTGG 2 cut(s) 398, 430
AloI GAACNNNNNNTCC 2 cut(s) 7, 39
AluBI AGCT 2 cut(s) 211, 508
AluI AGCT 2 cut(s) 211, 508
Alw21I GWGCWC 1 cut(s) 213
AlwI GGATC 3 cut(s) 12, 186, 831
AlwNI CAGNNNCTG 1 cut(s) 139
Ama87I CYCGRG 1 cut(s) 711
AoxI GGCC 4 cut(s) 17, 271, 418, 423
ApeKI GCWGC 2 cut(s) 316, 367
ApoI RAATTY 1 cut(s) 579
ArsI GACNNNNNNTTYG 2 cut(s) 475, 507
AspS9I GGNCC 4 cut(s) 418, 423, 773, 809
AsuC2I CCSGG 1 cut(s) 422
AsuHPI GGTGA 6 cut(s) 82, 109, 137, 359, 700, 755
AvaI CYCGRG 1 cut(s) 711
AvaII GGWCC 2 cut(s) 773, 809
BanII GRGCYC 1 cut(s) 213
BbrPI CACGTG 1 cut(s) 628
Bbv12I GWGCWC 1 cut(s) 213
BbvI GCAGC 2 cut(s) 303, 379
BccI CCATC 5 cut(s) 25, 151, 212, 347, 550
BceAI ACGGC 1 cut(s) 413
BciT130I CCWGG 6 cut(s) 21, 146, 197, 259, 562, 739
BcnI CCSGG 1 cut(s) 422
BfaI CTAG 1 cut(s) 509
BglII AGATCT 2 cut(s) 74, 101
BisI GCNGC 7 cut(s) 137, 288, 317, 338, 368, 387, 426
BlsI GCNGC 7 cut(s) 138, 289, 318, 339, 369, 388, 427
Bme1390I CCNGG 7 cut(s) 21, 146, 197, 259, 422, 562, 739
Bme18I GGWCC 2 cut(s) 773, 809
BmeT110I CYCGRG 1 cut(s) 711
BmgT120I GGNCC 4 cut(s) 418, 423, 773, 809
BmiI GGNNCC 2 cut(s) 540, 811
BmrFI CCNGG 7 cut(s) 21, 146, 197, 259, 422, 562, 739
BmsI GCATC 2 cut(s) 282, 576
BplI GAGNNNNNCTC 2 cut(s) 64, 96
BpuMI CCSGG 1 cut(s) 422
BsaAI YACGTR 1 cut(s) 628
BsaHI GRCGYC 1 cut(s) 149
BsaJI CCNNGG 5 cut(s) 85, 195, 196, 561, 738
BsaXI ACNNNNNCTCC 2 cut(s) 7, 37
Bsc4I CCNNNNNNNGG 6 cut(s) 86, 201, 202, 233, 234, 264
Bse118I RCCGGY 1 cut(s) 273
BseBI CCWGG 6 cut(s) 21, 146, 197, 259, 562, 739
BseDI CCNNGG 5 cut(s) 85, 195, 196, 561, 738
BseGI GGATG 3 cut(s) 36, 162, 796
BseLI CCNNNNNNNGG 6 cut(s) 86, 201, 202, 233, 234, 264
BseRI GAGGAG 2 cut(s) 69, 394
BseXI GCAGC 2 cut(s) 303, 379
BseYI CCCAGC 1 cut(s) 181
BshFI GGCC 4 cut(s) 19, 273, 420, 425
BsiHKAI GWGCWC 1 cut(s) 213
BsiHKCI CYCGRG 1 cut(s) 711
BsiSI CCGG 2 cut(s) 274, 421
BslFI GGGAC 2 cut(s) 218, 477
BslI CCNNNNNNNGG 6 cut(s) 86, 201, 202, 233, 234, 264
BsmFI GGGAC 2 cut(s) 218, 477
BsmI GAATGC 1 cut(s) 365
BsnI GGCC 4 cut(s) 19, 273, 420, 425
BsoBI CYCGRG 1 cut(s) 711
Bsp1286I GDGCHC 1 cut(s) 213
Bsp143I GATC 6 cut(s) 4, 64, 74, 101, 191, 823
BspANI GGCC 4 cut(s) 19, 273, 420, 425
BspLI GGNNCC 2 cut(s) 540, 811
BspPI GGATC 3 cut(s) 12, 186, 831
BsrFI RCCGGY 1 cut(s) 273
BssAI RCCGGY 1 cut(s) 273
BssECI CCNNGG 5 cut(s) 85, 195, 196, 561, 738
BssMI GATC 6 cut(s) 4, 64, 74, 101, 191, 823
BssNI GRCGYC 1 cut(s) 149
BssT1I CCWWGG 1 cut(s) 85
Bst2UI CCWGG 6 cut(s) 21, 146, 197, 259, 562, 739
Bst4CI ACNGT 1 cut(s) 652
Bst6I CTCTTC 1 cut(s) 653
BstACI GRCGYC 1 cut(s) 149
BstBAI YACGTR 1 cut(s) 628
BstC8I GCNNGC 3 cut(s) 134, 275, 365
BstF5I GGATG 3 cut(s) 36, 162, 796
BstKTI GATC 6 cut(s) 7, 67, 77, 104, 194, 826
BstMBI GATC 6 cut(s) 4, 64, 74, 101, 191, 823
BstNI CCWGG 6 cut(s) 21, 146, 197, 259, 562, 739
BstSCI CCNGG 7 cut(s) 19, 144, 195, 257, 420, 560, 737
BstV1I GCAGC 2 cut(s) 303, 379
BstX2I RGATCY 4 cut(s) 4, 74, 101, 823
BstXI CCANNNNNNTGG 2 cut(s) 549, 820
BstYI RGATCY 4 cut(s) 4, 74, 101, 823
BsuRI GGCC 4 cut(s) 19, 273, 420, 425
BtgZI GCGATG 1 cut(s) 305
BtsCI GGATG 3 cut(s) 36, 162, 796
Cac8I GCNNGC 3 cut(s) 134, 275, 365
CaiI CAGNNNCTG 1 cut(s) 139
Cfr10I RCCGGY 1 cut(s) 273
Cfr13I GGNCC 4 cut(s) 418, 423, 773, 809
CseI GACGC 1 cut(s) 138
CsiI ACCWGGT 1 cut(s) 257
Csp6I GTAC 1 cut(s) 170
CviAII CATG 2 cut(s) 93, 787
CviQI GTAC 1 cut(s) 170
DpnI GATC 6 cut(s) 6, 66, 76, 103, 193, 825
DpnII GATC 6 cut(s) 4, 64, 74, 101, 191, 823
DraIII CACNNNGTG 1 cut(s) 654
EaeI YGGCCR 1 cut(s) 271
Eam1104I CTCTTC 1 cut(s) 653
EarI CTCTTC 1 cut(s) 653
EciI GGCGGA 1 cut(s) 28
Ecl136II GAGCTC 1 cut(s) 211
Eco130I CCWWGG 1 cut(s) 85
Eco147I AGGCCT 1 cut(s) 19
Eco24I GRGCYC 1 cut(s) 213
Eco47I GGWCC 2 cut(s) 773, 809
Eco53kI GAGCTC 1 cut(s) 211
Eco72I CACGTG 1 cut(s) 628
Eco88I CYCGRG 1 cut(s) 711
EcoICRI GAGCTC 1 cut(s) 211
EcoRII CCWGG 6 cut(s) 19, 144, 195, 257, 560, 737
EcoT14I CCWWGG 1 cut(s) 85
EcoT38I GRGCYC 1 cut(s) 213
ErhI CCWWGG 1 cut(s) 85
FaeI CATG 2 cut(s) 96, 790
FaiI YATR 9 cut(s) 94, 548, 550, 573, 644, 788, 815, 821, 839
FaqI GGGAC 2 cut(s) 218, 477
FatI CATG 2 cut(s) 92, 786
FauI CCCGC 1 cut(s) 395
Fnu4HI GCNGC 7 cut(s) 137, 288, 317, 338, 368, 387, 426
FokI GGATG 3 cut(s) 43, 169, 803
FriOI GRGCYC 1 cut(s) 213
Fsp4HI GCNGC 7 cut(s) 137, 288, 317, 338, 368, 387, 426
FspBI CTAG 1 cut(s) 509
GluI GCNGC 7 cut(s) 137, 288, 317, 338, 368, 387, 426
GsaI CCCAGC 1 cut(s) 185
HaeIII GGCC 4 cut(s) 19, 273, 420, 425
HapII CCGG 2 cut(s) 274, 421
HgaI GACGC 1 cut(s) 138
Hin1I GRCGYC 1 cut(s) 149
Hin1II CATG 2 cut(s) 96, 790
HpaII CCGG 2 cut(s) 274, 421
HphI GGTGA 6 cut(s) 82, 109, 137, 359, 700, 755
Hpy166II GTNNAC 2 cut(s) 26, 170
Hpy188I TCNGA 3 cut(s) 106, 215, 249
Hpy188III TCNNGA 2 cut(s) 704, 713
Hpy8I GTNNAC 2 cut(s) 26, 170
HpyAV CCTTC 2 cut(s) 32, 114
HpyCH4III ACNGT 1 cut(s) 652
HpyCH4IV ACGT 5 cut(s) 50, 311, 322, 490, 627
HpyCH4V TGCA 3 cut(s) 319, 332, 625
HpySE526I ACGT 5 cut(s) 50, 311, 322, 490, 627
Hsp92I GRCGYC 1 cut(s) 149
Hsp92II CATG 2 cut(s) 96, 790
KroI GCCGGC 1 cut(s) 273
KroNI GCCGGC 1 cut(s) 275
Kzo9I GATC 6 cut(s) 4, 64, 74, 101, 191, 823
LmnI GCTCC 1 cut(s) 538
Lsp1109I GCAGC 2 cut(s) 303, 379
LweI GCATC 2 cut(s) 282, 576
MabI ACCWGGT 1 cut(s) 257
MaeI CTAG 1 cut(s) 509
MaeII ACGT 5 cut(s) 50, 311, 322, 490, 627
MaeIII GTNAC 7 cut(s) 150, 347, 554, 688, 704, 793, 803
MalI GATC 6 cut(s) 6, 66, 76, 103, 193, 825
MboI GATC 6 cut(s) 4, 64, 74, 101, 191, 823
MboII GAAGA 1 cut(s) 670
MfeI CAATTG 1 cut(s) 501
MflI RGATCY 4 cut(s) 4, 74, 101, 823
MhlI GDGCHC 1 cut(s) 213
MluCI AATT 4 cut(s) 440, 501, 579, 757
MmeI TCCRAC 2 cut(s) 33, 751
MnlI CCTC 9 cut(s) 9, 90, 168, 372, 375, 405, 512, 654, 687
MroNI GCCGGC 1 cut(s) 273
MslI CAYNNNNRTG 2 cut(s) 547, 818
MspA1I CMGCKG 1 cut(s) 136
MspI CCGG 2 cut(s) 274, 421
MspR9I CCNGG 7 cut(s) 21, 146, 197, 259, 422, 562, 739
MunI CAATTG 1 cut(s) 501
Mva1269I GAATGC 1 cut(s) 365
MvaI CCWGG 6 cut(s) 21, 146, 197, 259, 562, 739
NaeI GCCGGC 1 cut(s) 275
NciI CCSGG 1 cut(s) 422
NdeII GATC 6 cut(s) 4, 64, 74, 101, 191, 823
NgoMIV GCCGGC 1 cut(s) 273
NlaIII CATG 2 cut(s) 96, 790
NlaIV GGNNCC 2 cut(s) 540, 811
NmuCI GTSAC 5 cut(s) 150, 347, 688, 704, 803
PasI CCCWGGG 1 cut(s) 196
PceI AGGCCT 1 cut(s) 19
PctI GAATGC 1 cut(s) 365
PdiI GCCGGC 1 cut(s) 275
PflFI GACNNNGTC 1 cut(s) 694
PkrI GCNGC 7 cut(s) 138, 289, 318, 339, 369, 388, 427
PmaCI CACGTG 1 cut(s) 628
PmlI CACGTG 1 cut(s) 628
Ppu21I YACGTR 1 cut(s) 628
Psp124BI GAGCTC 1 cut(s) 213
Psp6I CCWGG 6 cut(s) 19, 144, 195, 257, 560, 737
PspCI CACGTG 1 cut(s) 628
PspFI CCCAGC 1 cut(s) 181
PspGI CCWGG 6 cut(s) 19, 144, 195, 257, 560, 737
PspN4I GGNNCC 2 cut(s) 540, 811
PspPI GGNCC 4 cut(s) 418, 423, 773, 809
PstNI CAGNNNCTG 1 cut(s) 139
PsuI RGATCY 4 cut(s) 4, 74, 101, 823
PsyI GACNNNGTC 1 cut(s) 694
RsaI GTAC 1 cut(s) 171
RsaNI GTAC 1 cut(s) 170
RseI CAYNNNNRTG 2 cut(s) 547, 818
SacI GAGCTC 1 cut(s) 213
SatI GCNGC 7 cut(s) 137, 288, 317, 338, 368, 387, 426
Sau3AI GATC 6 cut(s) 4, 64, 74, 101, 191, 823
Sau96I GGNCC 4 cut(s) 418, 423, 773, 809
ScrFI CCNGG 7 cut(s) 21, 146, 197, 259, 422, 562, 739
SduI GDGCHC 1 cut(s) 213
SexAI ACCWGGT 1 cut(s) 257
SfaNI GCATC 2 cut(s) 282, 576
SinI GGWCC 2 cut(s) 773, 809
SmiMI CAYNNNNRTG 2 cut(s) 547, 818
Sse9I AATT 4 cut(s) 440, 501, 579, 757
SseBI AGGCCT 1 cut(s) 19
SspMI CTAG 1 cut(s) 509
SstI GAGCTC 1 cut(s) 213
StuI AGGCCT 1 cut(s) 19
StyD4I CCNGG 7 cut(s) 19, 144, 195, 257, 420, 560, 737
StyI CCWWGG 1 cut(s) 85
TaaI ACNGT 1 cut(s) 652
TaiI ACGT 5 cut(s) 53, 314, 325, 493, 630
TaqI TCGA 3 cut(s) 190, 254, 584
TasI AATT 4 cut(s) 440, 501, 579, 757
TauI GCSGC 5 cut(s) 139, 290, 340, 389, 428
TseFI GTSAC 5 cut(s) 150, 347, 688, 704, 803
TseI GCWGC 2 cut(s) 316, 367
Tsp45I GTSAC 5 cut(s) 150, 347, 688, 704, 803
TspDTI ATGAA 1 cut(s) 775
TspGWI ACGGA 5 cut(s) 43, 169, 187, 619, 822
Tth111I GACNNNGTC 1 cut(s) 694
VpaK11BI GGWCC 2 cut(s) 773, 809
XapI RAATTY 1 cut(s) 579
XspI CTAG 1 cut(s) 509
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.