Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009868.1

Orthogroup ID

OG0001093

Physical Location & Seq

Genomic Coordinates Forward (+)

11359 .. 12699

Gene Structure 1341 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009868.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

atggatgttactattagtgacagacctataactatggatcttggtaggaatatgtgtcgtggtgttgttgataccacaaccgaatcggaccgggttgttgtagatgacagtgccggcgctggcggtggggacggggagctcacgggagaggccaacaacaccgtttcggaggtgggagtcaccgaggaaggtgaggttgcggaagttaaaaaggaggggaagttgaagctgaggttctcggcgagggaggaagaagaagagggagaggagagagaaagcaagaagctttattgggttcatgatatggccccgcacatcagcttcgactttagctccgggtcggggtcgtcgatccctgggtccgacttcgagctgattttgcagttgctgcagagagggtttgtgatgtcgtcgaccgtggaagggatcggcaagtgtagcaaatcggaggtggagatcggagtgaatcacagaggacgcgaacgcttacgcagcattggccgcggcgatagatctcagcattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1005

Protein Analysis

174

Amino Acids

18.95

Weight (kDa)

4.83

Isoelectric Point (pI)

41.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001093)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G25400 AT1G25400 AT1G68440
fragaria_vesca	FvH4_4g27210 FvH4_5g09320 FvH4_5g18320 FvH4_5g36190 FvH4_5g36660 FvH4_6g02080 FvH4_6g18410 FvH4_6g37922 FvH4_6g48101
malus_domestica	MD13G1040500.v1.1 MD16G1041500.v1.1
prunus_persica	Prupe.1G312600_v2.0.a1
pyrus_communis	pycom13g03470 pycom16g03590
rosa_chinensis	RchiOBHm_Chr2g0089781 RchiOBHm_Chr2g0161601 RchiOBHm_Chr4g0435001 RchiOBHm_Chr5g0057351 RchiOBHm_Chr6g0279821 RchiOBHm_Chr7g0227101
rosa_laevigata	RLG00000006630 RLG00000007926
rosa_multiflora	Rmu_co7981798.1_g000001 Rmu_co8240437.1_g000001 Rmu_sc0000400.1_g000034 Rmu_sc0000869.1_g000026 Rmu_sc0001246.1_g000017 Rmu_sc0002430.1_g000001 Rmu_sc0004574.1_g000051 Rmu_sc0009868.1_g000002 Rmu_sc0010765.1_g000001
rosa_roxburghii	Rroxscaffold_1G00019050 Rroxscaffold_2G00088100 Rroxscaffold_5G00376170
rosa_rugosa	Rorug02G0108200 Rorug02G0398300 Rorug02G0435100 Rorug03G0104500 Rorug03G0112000 Rorug03G0209100 Rorug04G0021800 Rorug04G0169800 Rorug04G0281500 Rorug04G0390300 Rorug05G0263200 Rorug05G0281200 Rorug06G0472700 Rorug07G0039700 Rorug07G0207300
rosa_samantha	Rh4AG337000 Rh4BG161500 Rh4BG344900 Rh4CG359600 Rh4DG339400 Rh5DG431200
rosa_wichuraiana	Rw4G029380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	413
AccII	CGCG	2 cut(s)	480, 504
AciI	CCGC	5 cut(s)	123, 200, 311, 502, 504
AclWI	GGATC	3 cut(s)	45, 346, 434
AcoI	YGGCCR	1 cut(s)	499
AfiI	CCNNNNNNNGG	2 cut(s)	342, 423
AgsI	TTSAA	1 cut(s)	226
AjnI	CCWGG	1 cut(s)	355
AluBI	AGCT	6 cut(s)	139, 229, 286, 321, 333, 373
AluI	AGCT	6 cut(s)	139, 229, 286, 321, 333, 373
Alw21I	GWGCWC	1 cut(s)	141
AlwI	GGATC	3 cut(s)	45, 346, 434
AlwNI	CAGNNNCTG	1 cut(s)	388
AoxI	GGCC	3 cut(s)	150, 306, 499
ApeKI	GCWGC	2 cut(s)	388, 492
AspLEI	GCGC	1 cut(s)	119
AspS9I	GGNCC	3 cut(s)	88, 307, 360
AsuC2I	CCSGG	2 cut(s)	92, 337
AsuHPI	GGTGA	2 cut(s)	172, 203
AvaII	GGWCC	2 cut(s)	88, 360
BanII	GRGCYC	1 cut(s)	141
Bbv12I	GWGCWC	1 cut(s)	141
BbvCI	CCTCAGC	1 cut(s)	230
BbvI	GCAGC	2 cut(s)	375, 504
BciT130I	CCWGG	1 cut(s)	357
BcnI	CCSGG	2 cut(s)	92, 337
BfmI	CTRYAG	1 cut(s)	389
BfoI	RGCGCY	1 cut(s)	120
BglII	AGATCT	1 cut(s)	512
BisI	GCNGC	4 cut(s)	389, 493, 502, 505
BlsI	GCNGC	4 cut(s)	390, 494, 503, 506
Bme1390I	CCNGG	3 cut(s)	92, 337, 357
Bme18I	GGWCC	2 cut(s)	88, 360
BmgT120I	GGNCC	3 cut(s)	88, 307, 360
BmiI	GGNNCC	2 cut(s)	309, 361
BmrFI	CCNGG	3 cut(s)	92, 337, 357
Bpu10I	CCTNAGC	1 cut(s)	230
BpuMI	CCSGG	2 cut(s)	92, 337
BsaJI	CCNNGG	5 cut(s)	183, 355, 356, 417, 502
BsaXI	ACNNNNNCTCC	4 cut(s)	206, 236, 317, 347
Bsc4I	CCNNNNNNNGG	2 cut(s)	342, 423
Bse118I	RCCGGY	1 cut(s)	113
BseBI	CCWGG	1 cut(s)	357
BseDI	CCNNGG	5 cut(s)	183, 355, 356, 417, 502
BseGI	GGATG	1 cut(s)	10
BseLI	CCNNNNNNNGG	2 cut(s)	342, 423
BseMII	CTCAG	1 cut(s)	221
BseRI	GAGGAG	1 cut(s)	281
BseXI	GCAGC	2 cut(s)	375, 504
Bsh1236I	CGCG	2 cut(s)	480, 504
Bsh1285I	CGRYCG	1 cut(s)	417
BshFI	GGCC	3 cut(s)	152, 308, 501
BsiEI	CGRYCG	1 cut(s)	417
BsiHKAI	GWGCWC	1 cut(s)	141
BsiSI	CCGG	3 cut(s)	91, 114, 336
BslFI	GGGAC	1 cut(s)	143
BslI	CCNNNNNNNGG	2 cut(s)	342, 423
BsmFI	GGGAC	1 cut(s)	143
BsnI	GGCC	3 cut(s)	152, 308, 501
Bsp1286I	GDGCHC	1 cut(s)	141
Bsp143I	GATC	5 cut(s)	37, 351, 426, 456, 512
BspACI	CCGC	5 cut(s)	123, 200, 311, 502, 504
BspANI	GGCC	3 cut(s)	152, 308, 501
BspCNI	CTCAG	1 cut(s)	222
BspFNI	CGCG	2 cut(s)	480, 504
BspHI	TCATGA	1 cut(s)	298
BspLI	GGNNCC	2 cut(s)	309, 361
BspMAI	CTGCAG	1 cut(s)	393
BspPI	GGATC	3 cut(s)	45, 346, 434
BsrFI	RCCGGY	1 cut(s)	113
BssAI	RCCGGY	1 cut(s)	113
BssECI	CCNNGG	5 cut(s)	183, 355, 356, 417, 502
BssMI	GATC	5 cut(s)	37, 351, 426, 456, 512
Bst2UI	CCWGG	1 cut(s)	357
Bst4CI	ACNGT	3 cut(s)	110, 163, 418
Bst6I	CTCTTC	1 cut(s)	252
BstAPI	GCANNNNNTGC	1 cut(s)	388
BstC8I	GCNNGC	2 cut(s)	115, 121
BstDEI	CTNAG	2 cut(s)	230, 516
BstDSI	CCRYGG	2 cut(s)	417, 502
BstF5I	GGATG	1 cut(s)	10
BstFNI	CGCG	2 cut(s)	480, 504
BstH2I	RGCGCY	1 cut(s)	120
BstHHI	GCGC	1 cut(s)	119
BstKTI	GATC	5 cut(s)	40, 354, 429, 459, 515
BstMBI	GATC	5 cut(s)	37, 351, 426, 456, 512
BstMCI	CGRYCG	1 cut(s)	417
BstMWI	GCNNNNNNNGC	6 cut(s)	379, 388, 438, 492, 498, 501
BstNI	CCWGG	1 cut(s)	357
BstSCI	CCNGG	3 cut(s)	90, 335, 355
BstSFI	CTRYAG	1 cut(s)	389
BstUI	CGCG	2 cut(s)	480, 504
BstV1I	GCAGC	2 cut(s)	375, 504
BstX2I	RGATCY	2 cut(s)	37, 512
BstYI	RGATCY	2 cut(s)	37, 512
BsuRI	GGCC	3 cut(s)	152, 308, 501
BtgI	CCRYGG	2 cut(s)	417, 502
BtsCI	GGATG	1 cut(s)	10
BtsIMutI	CAGTG	1 cut(s)	115
Cac8I	GCNNGC	2 cut(s)	115, 121
CaiI	CAGNNNCTG	1 cut(s)	388
CciI	TCATGA	1 cut(s)	298
CfoI	GCGC	1 cut(s)	119
Cfr10I	RCCGGY	1 cut(s)	113
Cfr13I	GGNCC	3 cut(s)	88, 307, 360
Cfr42I	CCGCGG	1 cut(s)	505
CpoI	CGGWCCG	1 cut(s)	88
CseI	GACGC	1 cut(s)	486
CspI	CGGWCCG	1 cut(s)	88
CviAII	CATG	1 cut(s)	299
CviJI	RGCY	9 cut(s)	139, 152, 229, 286, 308, 321, 333, 373, 501
CviKI_1	RGCY	9 cut(s)	139, 152, 229, 286, 308, 321, 333, 373, 501
DdeI	CTNAG	2 cut(s)	230, 516
DpnI	GATC	5 cut(s)	39, 353, 428, 458, 514
DpnII	GATC	5 cut(s)	37, 351, 426, 456, 512
EaeI	YGGCCR	1 cut(s)	499
Eam1104I	CTCTTC	1 cut(s)	252
EarI	CTCTTC	1 cut(s)	252
Ecl136II	GAGCTC	1 cut(s)	139
Eco24I	GRGCYC	1 cut(s)	141
Eco47I	GGWCC	2 cut(s)	88, 360
Eco53kI	GAGCTC	1 cut(s)	139
EcoICRI	GAGCTC	1 cut(s)	139
EcoRII	CCWGG	1 cut(s)	355
EcoT38I	GRGCYC	1 cut(s)	141
FaeI	CATG	1 cut(s)	302
FaiI	YATR	5 cut(s)	29, 35, 53, 300, 305
FaqI	GGGAC	1 cut(s)	143
FatI	CATG	1 cut(s)	298
FauI	CCCGC	1 cut(s)	318
FblI	GTMKAC	1 cut(s)	413
Fnu4HI	GCNGC	4 cut(s)	389, 493, 502, 505
FokI	GGATG	1 cut(s)	17
FriOI	GRGCYC	1 cut(s)	141
Fsp4HI	GCNGC	4 cut(s)	389, 493, 502, 505
GlaI	GCGC	1 cut(s)	118
GluI	GCNGC	4 cut(s)	389, 493, 502, 505
HaeII	RGCGCY	1 cut(s)	120
HaeIII	GGCC	3 cut(s)	152, 308, 501
HapII	CCGG	3 cut(s)	91, 114, 336
HgaI	GACGC	1 cut(s)	486
HhaI	GCGC	1 cut(s)	119
Hin1II	CATG	1 cut(s)	302
Hin6I	GCGC	1 cut(s)	117
HinP1I	GCGC	1 cut(s)	117
HincII	GTYRAC	1 cut(s)	414
HindII	GTYRAC	1 cut(s)	414
HindIII	AAGCTT	1 cut(s)	284
HinfI	GANTC	3 cut(s)	83, 177, 466
HpaII	CCGG	3 cut(s)	91, 114, 336
HphI	GGTGA	2 cut(s)	172, 203
Hpy166II	GTNNAC	1 cut(s)	414
Hpy188I	TCNGA	5 cut(s)	88, 169, 364, 448, 461
Hpy188III	TCNNGA	1 cut(s)	299
Hpy8I	GTNNAC	1 cut(s)	414
Hpy99I	CGWCG	2 cut(s)	352, 415
HpyAV	CCTTC	2 cut(s)	182, 416
HpyCH4III	ACNGT	3 cut(s)	110, 163, 418
HpyCH4V	TGCA	2 cut(s)	382, 391
HpyF10VI	GCNNNNNNNGC	6 cut(s)	379, 388, 438, 492, 498, 501
HpyF3I	CTNAG	2 cut(s)	230, 516
Hsp92II	CATG	1 cut(s)	302
HspAI	GCGC	1 cut(s)	117
KroI	GCCGGC	1 cut(s)	113
KroNI	GCCGGC	1 cut(s)	115
KspI	CCGCGG	1 cut(s)	505
Kzo9I	GATC	5 cut(s)	37, 351, 426, 456, 512
LmnI	GCTCC	2 cut(s)	136, 338
LpnPI	CCDG	6 cut(s)	104, 105, 127, 342, 349, 369
Lsp1109I	GCAGC	2 cut(s)	375, 504
MaeIII	GTNAC	3 cut(s)	7, 17, 178
MalI	GATC	5 cut(s)	39, 353, 428, 458, 514
MboI	GATC	5 cut(s)	37, 351, 426, 456, 512
MboII	GAAGA	3 cut(s)	263, 266, 269
MflI	RGATCY	2 cut(s)	37, 512
MhlI	GDGCHC	1 cut(s)	141
MlyI	GAGTC	1 cut(s)	186
MmeI	TCCRAC	1 cut(s)	387
MroNI	GCCGGC	1 cut(s)	113
MseI	TTAA	2 cut(s)	207, 523
MspA1I	CMGCKG	1 cut(s)	504
MspI	CCGG	3 cut(s)	91, 114, 336
MspR9I	CCNGG	3 cut(s)	92, 337, 357
MvaI	CCWGG	1 cut(s)	357
MvnI	CGCG	2 cut(s)	480, 504
MwoI	GCNNNNNNNGC	6 cut(s)	379, 388, 438, 492, 498, 501
NaeI	GCCGGC	1 cut(s)	115
NciI	CCSGG	2 cut(s)	92, 337
NdeII	GATC	5 cut(s)	37, 351, 426, 456, 512
NgoMIV	GCCGGC	1 cut(s)	113
NlaIII	CATG	1 cut(s)	302
NlaIV	GGNNCC	2 cut(s)	309, 361
NmeAIII	GCCGAG	1 cut(s)	218
NmuCI	GTSAC	2 cut(s)	17, 178
PagI	TCATGA	1 cut(s)	298
PasI	CCCWGGG	1 cut(s)	356
PcsI	WCGNNNNNNNCGW	1 cut(s)	347
PdiI	GCCGGC	1 cut(s)	115
PfeI	GAWTC	2 cut(s)	83, 466
PkrI	GCNGC	4 cut(s)	390, 494, 503, 506
PleI	GAGTC	1 cut(s)	185
PpsI	GAGTC	1 cut(s)	185
Psp124BI	GAGCTC	1 cut(s)	141
Psp6I	CCWGG	1 cut(s)	355
PspGI	CCWGG	1 cut(s)	355
PspN4I	GGNNCC	2 cut(s)	309, 361
PspPI	GGNCC	3 cut(s)	88, 307, 360
PstI	CTGCAG	1 cut(s)	393
PstNI	CAGNNNCTG	1 cut(s)	388
PsuI	RGATCY	2 cut(s)	37, 512
Rsr2I	CGGWCCG	1 cut(s)	88
RsrII	CGGWCCG	1 cut(s)	88
SacI	GAGCTC	1 cut(s)	141
SacII	CCGCGG	1 cut(s)	505
SalI	GTCGAC	1 cut(s)	412
SaqAI	TTAA	2 cut(s)	207, 523
SatI	GCNGC	4 cut(s)	389, 493, 502, 505
Sau3AI	GATC	5 cut(s)	37, 351, 426, 456, 512
Sau96I	GGNCC	3 cut(s)	88, 307, 360
SchI	GAGTC	1 cut(s)	186
ScrFI	CCNGG	3 cut(s)	92, 337, 357
SduI	GDGCHC	1 cut(s)	141
SfcI	CTRYAG	1 cut(s)	389
Sfr303I	CCGCGG	1 cut(s)	505
SgrBI	CCGCGG	1 cut(s)	505
SinI	GGWCC	2 cut(s)	88, 360
SsiI	CCGC	5 cut(s)	123, 200, 311, 502, 504
SstI	GAGCTC	1 cut(s)	141
StyD4I	CCNGG	3 cut(s)	90, 335, 355
TaaI	ACNGT	3 cut(s)	110, 163, 418
TaqI	TCGA	4 cut(s)	324, 350, 369, 413
TauI	GCSGC	2 cut(s)	504, 507
TfiI	GAWTC	2 cut(s)	83, 466
Tru1I	TTAA	2 cut(s)	207, 523
Tru9I	TTAA	2 cut(s)	207, 523
TscAI	CASTG	1 cut(s)	115
TseFI	GTSAC	2 cut(s)	17, 178
TseI	GCWGC	2 cut(s)	388, 492
Tsp45I	GTSAC	2 cut(s)	17, 178
TspDTI	ATGAA	1 cut(s)	287
TspRI	CASTG	1 cut(s)	115
VpaK11BI	GGWCC	2 cut(s)	88, 360
XmiI	GTMKAC	1 cut(s)	413

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.