Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0001093

Physical Location & Seq

Genomic Coordinates Reverse (-)

45481667 .. 45485501

Gene Structure 3835 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0281500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

ATGGTAGCACAGCTGCTTGAAAATGAGGAGCTTGTCGGAGTGGTTCGAGGATGCATCAAGCATGTGGGGACTGGTTTTGGGGGAGTATATGTGATGGGTTGCATACTAGGCCTTCGAGTCTCTCCCACACACCGGCGGATGGGAATTGGATTTCAATTGATGAACTCAGTGGAGGAGTGGCTGCTGAGAAAAGGAGCACAGTACACATTCCTGGCCACCGAAAGGAACAACACCGCCTCTACAAATCTATTCACTTCCAAATGCAATTACGAGAACATCAGCTCACTAATCATATTTGTGCAACCAATTTGTTCATCTGCAAAACATCTGCTGCCTCAAAATATTAAAATAGAGAAGTTGCATGTAGACCAGGCAATTTCCCTGTACGAAAATAAGCTAAGAAGCAAAGACATATCTCCAACAGACATGGATGTGATCTTAAAGGAAAAGCTCAGCCTGGGCACTTGGGTGTGTTATTTCGAAGAACAGGGTTGGATCAACTTGGACAGTGAGGGAAACAACAAGGGAACAATCACCAAAACGCAAAGCTCTTGGGTCATCTTTAGCATATGGAATAATTGTGAACCTTACAAGCTTCATATAAGAAAGTCACATCCTCTAAGGTATTTTCATGCTACCTTAAACCATGCAAGAGAGAAAATCTTTTCCTGTTTGAAAATGCCTCAGAGTAAGGTCTCGGTGCAAAGCTCCCTTGGGTTTCTCTTTCTCTATGGGATTCATGGGGAGGGAGAGCAGCTTGGTGAGCTTATGAAATCTGTTTGGAACTTCGCATTAGGATTGGGGCAGAATGTGAAGGACAGCAAGTTGATTATAACTGAGCTGGGGCAGTGTGATCCTCTCATAAAGCATGTCCCAGACAATCCCAGCATTTCACGAATCCATGATCTCTGGTACGCGAAAAGTTTGAGCAGCCACCACCCTGATGACCAAGATGCTCTGCTAATGAAGGGTCCTTTGGGAAATGTGTTTGTTGATCCAAGGGAATTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0008144 GO:0016020 GO:0016208 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0044464 GO:0071944 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Usp

Protein Analysis

336

Amino Acids

37.99

Weight (kDa)

8.06

Isoelectric Point (pI)

38.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Acetyltransf_1	PF00583	5 - 89	5.2e-13	Acetyltransferase (GNAT) family
Acetyltransf_7	PF13508	7 - 90	4.6e-06	Acetyltransferase (GNAT) domain
FR47	PF08445	30 - 92	1.2e-06	FR47-like protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001093)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G25400 AT1G25400 AT1G68440
fragaria_vesca	FvH4_4g27210 FvH4_5g09320 FvH4_5g18320 FvH4_5g36190 FvH4_5g36660 FvH4_6g02080 FvH4_6g18410 FvH4_6g37922 FvH4_6g48101
malus_domestica	MD13G1040500.v1.1 MD16G1041500.v1.1
prunus_persica	Prupe.1G312600_v2.0.a1
pyrus_communis	pycom13g03470 pycom16g03590
rosa_chinensis	RchiOBHm_Chr2g0089781 RchiOBHm_Chr2g0161601 RchiOBHm_Chr4g0435001 RchiOBHm_Chr5g0057351 RchiOBHm_Chr6g0279821 RchiOBHm_Chr7g0227101
rosa_laevigata	RLG00000006630 RLG00000007926
rosa_multiflora	Rmu_co7981798.1_g000001 Rmu_co8240437.1_g000001 Rmu_sc0000400.1_g000034 Rmu_sc0000869.1_g000026 Rmu_sc0001246.1_g000017 Rmu_sc0002430.1_g000001 Rmu_sc0004574.1_g000051 Rmu_sc0009868.1_g000002 Rmu_sc0010765.1_g000001
rosa_roxburghii	Rroxscaffold_1G00019050 Rroxscaffold_2G00088100 Rroxscaffold_5G00376170
rosa_rugosa	Rorug02G0108200 Rorug02G0398300 Rorug02G0435100 Rorug03G0104500 Rorug03G0112000 Rorug03G0209100 Rorug04G0021800 Rorug04G0169800 Rorug04G0281500 Rorug04G0390300 Rorug05G0263200 Rorug05G0281200 Rorug06G0472700 Rorug07G0039700 Rorug07G0207300
rosa_samantha	Rh4AG337000 Rh4BG161500 Rh4BG344900 Rh4CG359600 Rh4DG339400 Rh5DG431200
rosa_wichuraiana	Rw4G029380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	833
AccI	GTMKAC	1 cut(s)	366
AccII	CGCG	1 cut(s)	917
AciI	CCGC	2 cut(s)	136, 234
AclWI	GGATC	3 cut(s)	503, 848, 989
AcoI	YGGCCR	1 cut(s)	213
AcsI	RAATTY	1 cut(s)	1004
AfaI	GTAC	3 cut(s)	203, 386, 914
AfiI	CCNNNNNNNGG	3 cut(s)	132, 139, 222
AgsI	TTSAA	3 cut(s)	20, 155, 676
AjnI	CCWGG	3 cut(s)	210, 369, 456
AjuI	GAANNNNNNNTTGG	2 cut(s)	959, 991
AleI	CACNNNNGTG	1 cut(s)	467
Alw21I	GWGCWC	1 cut(s)	199
Alw26I	GTCTC	2 cut(s)	124, 700
AlwI	GGATC	3 cut(s)	503, 848, 989
AoxI	GGCC	2 cut(s)	109, 213
ApeKI	GCWGC	5 cut(s)	13, 181, 331, 754, 930
ApoI	RAATTY	1 cut(s)	1004
AspS9I	GGNCC	1 cut(s)	971
AsuHPI	GGTGA	2 cut(s)	526, 773
AsuII	TTCGAA	1 cut(s)	480
AvaII	GGWCC	1 cut(s)	971
BaeGI	GKGCMC	1 cut(s)	464
BalI	TGGCCA	1 cut(s)	215
Bbv12I	GWGCWC	1 cut(s)	199
BbvI	GCAGC	4 cut(s)	168, 318, 766, 942
BccI	CCATC	2 cut(s)	88, 133
BciT130I	CCWGG	3 cut(s)	212, 371, 458
BcoDI	GTCTC	2 cut(s)	124, 700
BfaI	CTAG	2 cut(s)	107, 1009
BisI	GCNGC	5 cut(s)	14, 182, 332, 755, 931
BlpI	GCTNAGC	1 cut(s)	452
BlsI	GCNGC	5 cut(s)	15, 183, 333, 756, 932
Bme1390I	CCNGG	3 cut(s)	212, 371, 458
Bme18I	GGWCC	1 cut(s)	971
BmgT120I	GGNCC	1 cut(s)	971
BmiI	GGNNCC	1 cut(s)	972
BmrFI	CCNGG	3 cut(s)	212, 371, 458
BmsI	GCATC	3 cut(s)	41, 63, 943
Bpu1102I	GCTNAGC	1 cut(s)	452
Bpu14I	TTCGAA	1 cut(s)	480
BsaI	GGTCTC	1 cut(s)	700
BsaJI	CCNNGG	3 cut(s)	457, 712, 998
BsaXI	ACNNNNNCTCC	2 cut(s)	75, 105
Bsc4I	CCNNNNNNNGG	3 cut(s)	132, 139, 222
Bse118I	RCCGGY	1 cut(s)	132
Bse1I	ACTGG	1 cut(s)	76
BseBI	CCWGG	3 cut(s)	212, 371, 458
BseDI	CCNNGG	3 cut(s)	457, 712, 998
BseGI	GGATG	4 cut(s)	56, 144, 436, 613
BseLI	CCNNNNNNNGG	3 cut(s)	132, 139, 222
BseMII	CTCAG	5 cut(s)	176, 180, 466, 698, 828
BseNI	ACTGG	1 cut(s)	76
BseRI	GAGGAG	2 cut(s)	41, 188
BseSI	GKGCMC	1 cut(s)	464
BseXI	GCAGC	4 cut(s)	168, 318, 766, 942
BseYI	CCCAGC	2 cut(s)	841, 884
Bsh1236I	CGCG	1 cut(s)	917
BshFI	GGCC	2 cut(s)	111, 215
BsiHKAI	GWGCWC	1 cut(s)	199
BsiSI	CCGG	1 cut(s)	133
BslFI	GGGAC	2 cut(s)	82, 857
BslI	CCNNNNNNNGG	3 cut(s)	132, 139, 222
BsmAI	GTCTC	2 cut(s)	124, 700
BsmFI	GGGAC	2 cut(s)	82, 857
BsnI	GGCC	2 cut(s)	111, 215
Bso31I	GGTCTC	1 cut(s)	700
Bsp119I	TTCGAA	1 cut(s)	480
Bsp1286I	GDGCHC	2 cut(s)	199, 464
Bsp143I	GATC	5 cut(s)	435, 495, 853, 904, 994
Bsp1720I	GCTNAGC	1 cut(s)	452
BspACI	CCGC	2 cut(s)	136, 234
BspANI	GGCC	2 cut(s)	111, 215
BspCNI	CTCAG	5 cut(s)	177, 179, 465, 697, 829
BspFNI	CGCG	1 cut(s)	917
BspLI	GGNNCC	1 cut(s)	972
BspPI	GGATC	3 cut(s)	503, 848, 989
BspT104I	TTCGAA	1 cut(s)	480
BspTNI	GGTCTC	1 cut(s)	700
BsrFI	RCCGGY	1 cut(s)	132
BsrI	ACTGG	1 cut(s)	76
BssAI	RCCGGY	1 cut(s)	132
BssECI	CCNNGG	3 cut(s)	457, 712, 998
BssMI	GATC	5 cut(s)	435, 495, 853, 904, 994
BssT1I	CCWWGG	2 cut(s)	712, 998
Bst2UI	CCWGG	3 cut(s)	212, 371, 458
Bst4CI	ACNGT	2 cut(s)	201, 509
BstBI	TTCGAA	1 cut(s)	480
BstDEI	CTNAG	7 cut(s)	166, 185, 398, 452, 620, 684, 837
BstF5I	GGATG	4 cut(s)	56, 144, 436, 613
BstFNI	CGCG	1 cut(s)	917
BstKTI	GATC	5 cut(s)	438, 498, 856, 907, 997
BstMAI	GTCTC	2 cut(s)	124, 700
BstMBI	GATC	5 cut(s)	435, 495, 853, 904, 994
BstMWI	GCNNNNNNNGC	2 cut(s)	108, 763
BstNI	CCWGG	3 cut(s)	212, 371, 458
BstNSI	RCATGY	3 cut(s)	65, 365, 872
BstSCI	CCNGG	3 cut(s)	210, 369, 456
BstSLI	GKGCMC	1 cut(s)	464
BstUI	CGCG	1 cut(s)	917
BstV1I	GCAGC	4 cut(s)	168, 318, 766, 942
BsuRI	GGCC	2 cut(s)	111, 215
BtsCI	GGATG	4 cut(s)	56, 144, 436, 613
BtsI	GCAGTG	1 cut(s)	854
BtsIMutI	CAGTG	3 cut(s)	174, 514, 854
Cfr10I	RCCGGY	1 cut(s)	132
Cfr13I	GGNCC	1 cut(s)	971
Csp6I	GTAC	3 cut(s)	202, 385, 913
CviAII	CATG	8 cut(s)	62, 362, 427, 632, 647, 740, 869, 902
CviQI	GTAC	3 cut(s)	202, 385, 913
DdeI	CTNAG	7 cut(s)	166, 185, 398, 452, 620, 684, 837
DpnI	GATC	5 cut(s)	437, 497, 855, 906, 996
DpnII	GATC	5 cut(s)	435, 495, 853, 904, 994
EaeI	YGGCCR	1 cut(s)	213
EciI	GGCGGA	1 cut(s)	151
Eco130I	CCWWGG	2 cut(s)	712, 998
Eco147I	AGGCCT	1 cut(s)	111
Eco31I	GGTCTC	1 cut(s)	700
Eco47I	GGWCC	1 cut(s)	971
EcoO109I	RGGNCCY	1 cut(s)	971
EcoRI	GAATTC	1 cut(s)	1004
EcoRII	CCWGG	3 cut(s)	210, 369, 456
EcoT14I	CCWWGG	2 cut(s)	712, 998
EcoT22I	ATGCAT	1 cut(s)	56
ErhI	CCWWGG	2 cut(s)	712, 998
FaeI	CATG	8 cut(s)	65, 365, 430, 635, 650, 743, 872, 905
FaqI	GGGAC	2 cut(s)	82, 857
FatI	CATG	8 cut(s)	61, 361, 426, 631, 646, 739, 868, 901
FauNDI	CATATG	1 cut(s)	569
FblI	GTMKAC	1 cut(s)	366
Fnu4HI	GCNGC	5 cut(s)	14, 182, 332, 755, 931
FokI	GGATG	4 cut(s)	63, 151, 443, 600
Fsp4HI	GCNGC	5 cut(s)	14, 182, 332, 755, 931
FspBI	CTAG	2 cut(s)	107, 1009
GluI	GCNGC	5 cut(s)	14, 182, 332, 755, 931
GsaI	CCCAGC	2 cut(s)	845, 888
HaeIII	GGCC	2 cut(s)	111, 215
HapII	CCGG	1 cut(s)	133
Hin1II	CATG	8 cut(s)	65, 365, 430, 635, 650, 743, 872, 905
HindIII	AAGCTT	1 cut(s)	593
HinfI	GANTC	3 cut(s)	117, 736, 897
HpaII	CCGG	1 cut(s)	133
HphI	GGTGA	2 cut(s)	526, 773
Hpy166II	GTNNAC	3 cut(s)	204, 367, 584
Hpy188I	TCNGA	2 cut(s)	38, 687
Hpy188III	TCNNGA	1 cut(s)	894
Hpy8I	GTNNAC	3 cut(s)	204, 367, 584
HpyAV	CCTTC	3 cut(s)	122, 808, 961
HpyCH4III	ACNGT	2 cut(s)	201, 509
HpyCH4V	TGCA	8 cut(s)	54, 102, 264, 301, 320, 361, 650, 703
HpyF10VI	GCNNNNNNNGC	2 cut(s)	108, 763
HpyF3I	CTNAG	7 cut(s)	166, 185, 398, 452, 620, 684, 837
Hsp92II	CATG	8 cut(s)	65, 365, 430, 635, 650, 743, 872, 905
Kzo9I	GATC	5 cut(s)	435, 495, 853, 904, 994
LmnI	GCTCC	3 cut(s)	28, 194, 713
Lsp1109I	GCAGC	4 cut(s)	168, 318, 766, 942
LweI	GCATC	3 cut(s)	41, 63, 943
MaeI	CTAG	2 cut(s)	107, 1009
MaeIII	GTNAC	1 cut(s)	609
MalI	GATC	5 cut(s)	437, 497, 855, 906, 996
MboI	GATC	5 cut(s)	435, 495, 853, 904, 994
MboII	GAAGA	1 cut(s)	494
MfeI	CAATTG	1 cut(s)	155
MhlI	GDGCHC	2 cut(s)	199, 464
MlsI	TGGCCA	1 cut(s)	215
MluCI	AATT	7 cut(s)	144, 155, 265, 306, 375, 577, 1004
MluNI	TGGCCA	1 cut(s)	215
MlyI	GAGTC	1 cut(s)	126
MmeI	TCCRAC	3 cut(s)	16, 443, 473
Mox20I	TGGCCA	1 cut(s)	215
Mph1103I	ATGCAT	1 cut(s)	56
MscI	TGGCCA	1 cut(s)	215
MseI	TTAA	3 cut(s)	345, 440, 641
MslI	CAYNNNNRTG	4 cut(s)	296, 431, 467, 942
Msp20I	TGGCCA	1 cut(s)	215
MspA1I	CMGCKG	1 cut(s)	13
MspI	CCGG	1 cut(s)	133
MspR9I	CCNGG	3 cut(s)	212, 371, 458
MunI	CAATTG	1 cut(s)	155
MvaI	CCWGG	3 cut(s)	212, 371, 458
MvnI	CGCG	1 cut(s)	917
MwoI	GCNNNNNNNGC	2 cut(s)	108, 763
NdeI	CATATG	1 cut(s)	569
NdeII	GATC	5 cut(s)	435, 495, 853, 904, 994
NlaIII	CATG	8 cut(s)	65, 365, 430, 635, 650, 743, 872, 905
NlaIV	GGNNCC	1 cut(s)	972
NmuCI	GTSAC	1 cut(s)	609
NsiI	ATGCAT	1 cut(s)	56
NspI	RCATGY	3 cut(s)	65, 365, 872
NspV	TTCGAA	1 cut(s)	480
OliI	CACNNNNGTG	1 cut(s)	467
PceI	AGGCCT	1 cut(s)	111
PfeI	GAWTC	2 cut(s)	736, 897
PkrI	GCNGC	5 cut(s)	15, 183, 333, 756, 932
PleI	GAGTC	1 cut(s)	125
PpsI	GAGTC	1 cut(s)	125
PpuMI	RGGWCCY	1 cut(s)	971
PsiI	TTATAA	1 cut(s)	833
Psp5II	RGGWCCY	1 cut(s)	971
Psp6I	CCWGG	3 cut(s)	210, 369, 456
PspFI	CCCAGC	2 cut(s)	841, 884
PspGI	CCWGG	3 cut(s)	210, 369, 456
PspN4I	GGNNCC	1 cut(s)	972
PspPI	GGNCC	1 cut(s)	971
PspPPI	RGGWCCY	1 cut(s)	971
PvuII	CAGCTG	1 cut(s)	13
RsaI	GTAC	3 cut(s)	203, 386, 914
RsaNI	GTAC	3 cut(s)	202, 385, 913
RseI	CAYNNNNRTG	4 cut(s)	296, 431, 467, 942
SaqAI	TTAA	3 cut(s)	345, 440, 641
SatI	GCNGC	5 cut(s)	14, 182, 332, 755, 931
Sau3AI	GATC	5 cut(s)	435, 495, 853, 904, 994
Sau96I	GGNCC	1 cut(s)	971
SchI	GAGTC	1 cut(s)	126
ScrFI	CCNGG	3 cut(s)	212, 371, 458
SduI	GDGCHC	2 cut(s)	199, 464
SfaNI	GCATC	3 cut(s)	41, 63, 943
SfuI	TTCGAA	1 cut(s)	480
SgrAI	CRCCGGYG	1 cut(s)	132
SinI	GGWCC	1 cut(s)	971
SmiMI	CAYNNNNRTG	4 cut(s)	296, 431, 467, 942
Sse9I	AATT	7 cut(s)	144, 155, 265, 306, 375, 577, 1004
SseBI	AGGCCT	1 cut(s)	111
SsiI	CCGC	2 cut(s)	136, 234
SspI	AATATT	1 cut(s)	343
SspMI	CTAG	2 cut(s)	107, 1009
StuI	AGGCCT	1 cut(s)	111
StyD4I	CCNGG	3 cut(s)	210, 369, 456
StyI	CCWWGG	2 cut(s)	712, 998
TaaI	ACNGT	2 cut(s)	201, 509
TaqI	TCGA	3 cut(s)	46, 115, 480
TasI	AATT	7 cut(s)	144, 155, 265, 306, 375, 577, 1004
TatI	WGTACW	1 cut(s)	201
TfiI	GAWTC	2 cut(s)	736, 897
Tru1I	TTAA	3 cut(s)	345, 440, 641
Tru9I	TTAA	3 cut(s)	345, 440, 641
TscAI	CASTG	3 cut(s)	174, 514, 854
TseFI	GTSAC	1 cut(s)	609
TseI	GCWGC	5 cut(s)	13, 181, 331, 754, 930
Tsp45I	GTSAC	1 cut(s)	609
TspDTI	ATGAA	7 cut(s)	176, 303, 587, 620, 728, 785, 980
TspRI	CASTG	3 cut(s)	174, 514, 854
VpaK11BI	GGWCC	1 cut(s)	971
XapI	RAATTY	1 cut(s)	1004
XceI	RCATGY	3 cut(s)	65, 365, 872
XmiI	GTMKAC	1 cut(s)	366
XspI	CTAG	2 cut(s)	107, 1009
Zsp2I	ATGCAT	1 cut(s)	56

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.