Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0001093

Physical Location & Seq

Genomic Coordinates Forward (+)

26529365 .. 26530592

Gene Structure 1228 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g36190.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGATGGGTGTGGCCGGACGGGCTATTGGTTGGGCTATGGATTGTGGTGGTCGGAGGATGGGAGAGTTAATGGCTTCGGAATGGGTGCGATCCAGTATAAGTTGGCTTGTGCTTCTGATGTGGGTCGATATGGCTACTATTCTGGTCTTTCTGATGCGTCGAGGGCAGGTAGAGGTATCGCGGGATTGGAGGTGGTTCGAGGAGGGGAAGATTGCGGTGGCGCTGCTCTGCTCAGATCGTGTTTTTTCGATCTGGGTTGGACAGTCCTGGTGTGATATGTGGAAGGTTTCAGATGAAGGTTGTGATACTTTTTCAGGCCCTCACGCGGAAGTTGGGAGGATGGTGGCGGCAGGGGGTCGACGGAGGTGGCGGAGCAGTTCTCTGAGGGATCTGCCGAGTCGGGCCAATTTGCAAGTGGATCGGGTCTTCTTTGTGGGCCTTTGTCTCTATGTCCATCTGGTGGGTGATTGGGTCTGGACTTTCTGTTTGGGCTTGAATTGGTCCTTGTTTTTACTTTTGGTCTTTGGTATTGTTAGGTTAGGGTTTTTTGTTTTTTGGTATTGGTTAGGTCTAATAAGTCTCTCCTCTTTCGAGCGAGAGTTGGGGTGTTTTGGTTTGGTTGGTATGCTACTTTGGTGGCGTTGTTCTTGGGGTTTCATCTTGGTGTTGTCTGGTTGTCAACATGTGGGTGGATTGCCTTTGCATATAGTCTGGTGGTTTTTGGACACGGTGTTGAAGAAGGATAATTGGCTCGGTTTATTGTTGGTAGCAAGGTTATATCGTTACTTCCAGGCTTTGGTAGCTCGTATTGGGAGTAAAATTTGGTTAGGGGTTGGGTCCTTTTGGCTCATGGATGTTGTTTTTTGTAACGGACCTGTAACTATGGTTATTGGTAGGAATGGGCGTTTTGGTGTAGGCACCATAACCGATCATTCCGTTATGCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

316

Amino Acids

36.03

Weight (kDa)

9.02

Isoelectric Point (pI)

31.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001093)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G25400 AT1G25400 AT1G68440
fragaria_vesca	FvH4_4g27210 FvH4_5g09320 FvH4_5g18320 FvH4_5g36190 FvH4_5g36660 FvH4_6g02080 FvH4_6g18410 FvH4_6g37922 FvH4_6g48101
malus_domestica	MD13G1040500.v1.1 MD16G1041500.v1.1
prunus_persica	Prupe.1G312600_v2.0.a1
pyrus_communis	pycom13g03470 pycom16g03590
rosa_chinensis	RchiOBHm_Chr2g0089781 RchiOBHm_Chr2g0161601 RchiOBHm_Chr4g0435001 RchiOBHm_Chr5g0057351 RchiOBHm_Chr6g0279821 RchiOBHm_Chr7g0227101
rosa_laevigata	RLG00000006630 RLG00000007926
rosa_multiflora	Rmu_co7981798.1_g000001 Rmu_co8240437.1_g000001 Rmu_sc0000400.1_g000034 Rmu_sc0000869.1_g000026 Rmu_sc0001246.1_g000017 Rmu_sc0002430.1_g000001 Rmu_sc0004574.1_g000051 Rmu_sc0009868.1_g000002 Rmu_sc0010765.1_g000001
rosa_roxburghii	Rroxscaffold_1G00019050 Rroxscaffold_2G00088100 Rroxscaffold_5G00376170
rosa_rugosa	Rorug02G0108200 Rorug02G0398300 Rorug02G0435100 Rorug03G0104500 Rorug03G0112000 Rorug03G0209100 Rorug04G0021800 Rorug04G0169800 Rorug04G0281500 Rorug04G0390300 Rorug05G0263200 Rorug05G0281200 Rorug06G0472700 Rorug07G0039700 Rorug07G0207300
rosa_samantha	Rh4AG337000 Rh4BG161500 Rh4BG344900 Rh4CG359600 Rh4DG339400 Rh5DG431200
rosa_wichuraiana	Rw4G029380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	157
AccB1I	GGYRCC	1 cut(s)	917
AccB7I	CCANNNNNTGG	2 cut(s)	460, 796
AccI	GTMKAC	1 cut(s)	358
AccII	CGCG	2 cut(s)	181, 326
AciI	CCGC	5 cut(s)	181, 215, 326, 347, 370
AclWI	GGATC	3 cut(s)	84, 396, 426
AcoI	YGGCCR	1 cut(s)	12
AcsI	RAATTY	1 cut(s)	819
AfiI	CCNNNNNNNGG	3 cut(s)	325, 460, 796
AflIII	ACRYGT	1 cut(s)	682
AgsI	TTSAA	2 cut(s)	496, 736
AjnI	CCWGG	2 cut(s)	266, 789
AluBI	AGCT	1 cut(s)	803
AluI	AGCT	1 cut(s)	803
Alw26I	GTCTC	2 cut(s)	449, 584
AlwI	GGATC	3 cut(s)	84, 396, 426
AoxI	GGCC	4 cut(s)	12, 316, 402, 436
ApeKI	GCWGC	1 cut(s)	223
ApoI	RAATTY	1 cut(s)	819
ArsI	GACNNNNNNTTYG	2 cut(s)	469, 501
AspLEI	GCGC	1 cut(s)	223
AspS9I	GGNCC	6 cut(s)	317, 402, 436, 501, 837, 872
AsuHPI	GGTGA	1 cut(s)	476
AvaII	GGWCC	3 cut(s)	501, 837, 872
BanI	GGYRCC	1 cut(s)	917
BbsI	GAAGAC	1 cut(s)	418
BbvI	GCAGC	1 cut(s)	210
BccI	CCATC	3 cut(s)	52, 334, 462
BcgI	CGANNNNNNTGC	2 cut(s)	401, 435
BciT130I	CCWGG	2 cut(s)	268, 791
BcoDI	GTCTC	2 cut(s)	449, 584
BfoI	RGCGCY	1 cut(s)	224
BfuAI	ACCTGC	1 cut(s)	157
BglI	GCCNNNNNGGC	1 cut(s)	20
BisI	GCNGC	2 cut(s)	224, 348
BlsI	GCNGC	2 cut(s)	225, 349
Bme1390I	CCNGG	2 cut(s)	268, 791
Bme18I	GGWCC	3 cut(s)	501, 837, 872
BmgT120I	GGNCC	6 cut(s)	317, 402, 436, 501, 837, 872
BmiI	GGNNCC	2 cut(s)	838, 919
BmrFI	CCNGG	2 cut(s)	268, 791
BmsI	GCATC	1 cut(s)	144
BpiI	GAAGAC	1 cut(s)	418
BplI	GAGNNNNNCTC	2 cut(s)	364, 396
Bsc4I	CCNNNNNNNGG	3 cut(s)	325, 460, 796
Bse1I	ACTGG	1 cut(s)	93
BseBI	CCWGG	2 cut(s)	268, 791
BseGI	GGATG	3 cut(s)	63, 345, 859
BseLI	CCNNNNNNNGG	3 cut(s)	325, 460, 796
BseMII	CTCAG	2 cut(s)	246, 374
BseNI	ACTGG	1 cut(s)	93
BseRI	GAGGAG	2 cut(s)	215, 574
BseXI	GCAGC	1 cut(s)	210
Bsh1236I	CGCG	2 cut(s)	181, 326
BshFI	GGCC	4 cut(s)	14, 318, 404, 438
BshNI	GGYRCC	1 cut(s)	917
BsiSI	CCGG	1 cut(s)	15
BslI	CCNNNNNNNGG	3 cut(s)	325, 460, 796
BsmAI	GTCTC	2 cut(s)	449, 584
BsnI	GGCC	4 cut(s)	14, 318, 404, 438
Bsp143I	GATC	6 cut(s)	89, 235, 249, 388, 418, 928
BspACI	CCGC	5 cut(s)	181, 215, 326, 347, 370
BspANI	GGCC	4 cut(s)	14, 318, 404, 438
BspCNI	CTCAG	2 cut(s)	245, 375
BspFNI	CGCG	2 cut(s)	181, 326
BspLI	GGNNCC	2 cut(s)	838, 919
BspMI	ACCTGC	1 cut(s)	157
BspPI	GGATC	3 cut(s)	84, 396, 426
BspT107I	GGYRCC	1 cut(s)	917
BsrI	ACTGG	1 cut(s)	93
BssMI	GATC	6 cut(s)	89, 235, 249, 388, 418, 928
Bst2UI	CCWGG	2 cut(s)	268, 791
Bst4CI	ACNGT	2 cut(s)	264, 730
BstDEI	CTNAG	2 cut(s)	232, 383
BstF5I	GGATG	3 cut(s)	63, 345, 859
BstFNI	CGCG	2 cut(s)	181, 326
BstH2I	RGCGCY	1 cut(s)	224
BstHHI	GCGC	1 cut(s)	223
BstKTI	GATC	6 cut(s)	92, 238, 252, 391, 421, 931
BstMAI	GTCTC	2 cut(s)	449, 584
BstMBI	GATC	6 cut(s)	89, 235, 249, 388, 418, 928
BstMWI	GCNNNNNNNGC	3 cut(s)	20, 163, 800
BstNI	CCWGG	2 cut(s)	268, 791
BstNSI	RCATGY	1 cut(s)	686
BstSCI	CCNGG	2 cut(s)	266, 789
BstUI	CGCG	2 cut(s)	181, 326
BstV1I	GCAGC	1 cut(s)	210
BstV2I	GAAGAC	1 cut(s)	418
BstX2I	RGATCY	1 cut(s)	388
BstYI	RGATCY	1 cut(s)	388
BsuRI	GGCC	4 cut(s)	14, 318, 404, 438
BtsCI	GGATG	3 cut(s)	63, 345, 859
BveI	ACCTGC	1 cut(s)	157
CfoI	GCGC	1 cut(s)	223
Cfr13I	GGNCC	6 cut(s)	317, 402, 436, 501, 837, 872
CseI	GACGC	1 cut(s)	146
CviAII	CATG	2 cut(s)	683, 850
DdeI	CTNAG	2 cut(s)	232, 383
DpnI	GATC	6 cut(s)	91, 237, 251, 390, 420, 930
DpnII	GATC	6 cut(s)	89, 235, 249, 388, 418, 928
EaeI	YGGCCR	1 cut(s)	12
EciI	GGCGGA	1 cut(s)	385
Eco47I	GGWCC	3 cut(s)	501, 837, 872
EcoO109I	RGGNCCY	2 cut(s)	317, 837
EcoRII	CCWGG	2 cut(s)	266, 789
FaeI	CATG	2 cut(s)	686, 853
FatI	CATG	2 cut(s)	682, 849
FauI	CCCGC	1 cut(s)	174
FblI	GTMKAC	1 cut(s)	358
Fnu4HI	GCNGC	2 cut(s)	224, 348
FokI	GGATG	3 cut(s)	70, 352, 866
Fsp4HI	GCNGC	2 cut(s)	224, 348
GlaI	GCGC	1 cut(s)	222
GluI	GCNGC	2 cut(s)	224, 348
HaeII	RGCGCY	1 cut(s)	224
HaeIII	GGCC	4 cut(s)	14, 318, 404, 438
HapII	CCGG	1 cut(s)	15
HgaI	GACGC	1 cut(s)	146
HhaI	GCGC	1 cut(s)	223
Hin1II	CATG	2 cut(s)	686, 853
Hin6I	GCGC	1 cut(s)	221
HinP1I	GCGC	1 cut(s)	221
HincII	GTYRAC	2 cut(s)	359, 680
HindII	GTYRAC	2 cut(s)	359, 680
HinfI	GANTC	1 cut(s)	397
HpaII	CCGG	1 cut(s)	15
HphI	GGTGA	1 cut(s)	476
Hpy166II	GTNNAC	2 cut(s)	359, 680
Hpy188I	TCNGA	7 cut(s)	54, 79, 117, 153, 235, 292, 384
Hpy188III	TCNNGA	1 cut(s)	475
Hpy8I	GTNNAC	2 cut(s)	359, 680
Hpy99I	CGWCG	2 cut(s)	162, 363
HpyAV	CCTTC	3 cut(s)	277, 290, 733
HpyCH4III	ACNGT	2 cut(s)	264, 730
HpyCH4V	TGCA	2 cut(s)	412, 703
HpyF10VI	GCNNNNNNNGC	3 cut(s)	20, 163, 800
HpyF3I	CTNAG	2 cut(s)	232, 383
Hsp92II	CATG	2 cut(s)	686, 853
HspAI	GCGC	1 cut(s)	221
Kzo9I	GATC	6 cut(s)	89, 235, 249, 388, 418, 928
LmnI	GCTCC	1 cut(s)	372
Lsp1109I	GCAGC	1 cut(s)	210
LweI	GCATC	1 cut(s)	144
MaeIII	GTNAC	3 cut(s)	782, 866, 877
MalI	GATC	6 cut(s)	91, 237, 251, 390, 420, 930
MboI	GATC	6 cut(s)	89, 235, 249, 388, 418, 928
MboII	GAAGA	3 cut(s)	220, 418, 748
MflI	RGATCY	1 cut(s)	388
MluCI	AATT	4 cut(s)	406, 496, 745, 819
MlyI	GAGTC	1 cut(s)	406
MmeI	TCCRAC	2 cut(s)	32, 238
MseI	TTAA	1 cut(s)	68
MslI	CAYNNNNRTG	2 cut(s)	662, 687
MspI	CCGG	1 cut(s)	15
MspR9I	CCNGG	2 cut(s)	268, 791
MvaI	CCWGG	2 cut(s)	268, 791
MvnI	CGCG	2 cut(s)	181, 326
MwoI	GCNNNNNNNGC	3 cut(s)	20, 163, 800
NdeII	GATC	6 cut(s)	89, 235, 249, 388, 418, 928
NlaIII	CATG	2 cut(s)	686, 853
NlaIV	GGNNCC	2 cut(s)	838, 919
NmeAIII	GCCGAG	1 cut(s)	420
NspI	RCATGY	1 cut(s)	686
PciI	ACATGT	1 cut(s)	682
PflMI	CCANNNNNTGG	2 cut(s)	460, 796
PkrI	GCNGC	2 cut(s)	225, 349
PleI	GAGTC	1 cut(s)	405
PpsI	GAGTC	1 cut(s)	405
PpuMI	RGGWCCY	1 cut(s)	837
PscI	ACATGT	1 cut(s)	682
Psp5II	RGGWCCY	1 cut(s)	837
Psp6I	CCWGG	2 cut(s)	266, 789
PspGI	CCWGG	2 cut(s)	266, 789
PspN4I	GGNNCC	2 cut(s)	838, 919
PspPI	GGNCC	6 cut(s)	317, 402, 436, 501, 837, 872
PspPPI	RGGWCCY	1 cut(s)	837
PsuI	RGATCY	1 cut(s)	388
RseI	CAYNNNNRTG	2 cut(s)	662, 687
SalI	GTCGAC	1 cut(s)	357
SaqAI	TTAA	1 cut(s)	68
SatI	GCNGC	2 cut(s)	224, 348
Sau3AI	GATC	6 cut(s)	89, 235, 249, 388, 418, 928
Sau96I	GGNCC	6 cut(s)	317, 402, 436, 501, 837, 872
SchI	GAGTC	1 cut(s)	406
ScrFI	CCNGG	2 cut(s)	268, 791
SfaNI	GCATC	1 cut(s)	144
SinI	GGWCC	3 cut(s)	501, 837, 872
SmiMI	CAYNNNNRTG	2 cut(s)	662, 687
Sse9I	AATT	4 cut(s)	406, 496, 745, 819
SsiI	CCGC	5 cut(s)	181, 215, 326, 347, 370
StyD4I	CCNGG	2 cut(s)	266, 789
TaaI	ACNGT	2 cut(s)	264, 730
TaqI	TCGA	6 cut(s)	126, 160, 198, 248, 358, 591
TasI	AATT	4 cut(s)	406, 496, 745, 819
TauI	GCSGC	1 cut(s)	350
Tru1I	TTAA	1 cut(s)	68
Tru9I	TTAA	1 cut(s)	68
TseI	GCWGC	1 cut(s)	223
TspDTI	ATGAA	2 cut(s)	309, 646
TspGWI	ACGGA	3 cut(s)	376, 885, 925
Van91I	CCANNNNNTGG	2 cut(s)	460, 796
VpaK11BI	GGWCC	3 cut(s)	501, 837, 872
XapI	RAATTY	1 cut(s)	819
XceI	RCATGY	1 cut(s)	686
XcmI	CCANNNNNNNNNTGG	1 cut(s)	412
XmiI	GTMKAC	1 cut(s)	358

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.