Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co7981798.1

Orthogroup ID

OG0001093

Physical Location & Seq

Genomic Coordinates Reverse (-)

87 .. 395

Gene Structure 309 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co7981798.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 255 bp

atgagaaacacatcaacagagaaagagagtttgacgcccccgcacatcagcttcgactttagctccgggtcggggtcgtcgatccctgggtccgacttcgagctgattttgcagttgctgcagagagggtttgtgatgtcgtcgaccgtggaagggatcggcaagtgtagcaaatcggaggtggagatcggagtgaatcacagaggacgcgaacgcttacgcagcattggccgcggcgatagatctcagcattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1005

Protein Analysis

84

Amino Acids

9.21

Weight (kDa)

8.0

Isoelectric Point (pI)

56.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001093)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G25400 AT1G25400 AT1G68440
fragaria_vesca	FvH4_4g27210 FvH4_5g09320 FvH4_5g18320 FvH4_5g36190 FvH4_5g36660 FvH4_6g02080 FvH4_6g18410 FvH4_6g37922 FvH4_6g48101
malus_domestica	MD13G1040500.v1.1 MD16G1041500.v1.1
prunus_persica	Prupe.1G312600_v2.0.a1
pyrus_communis	pycom13g03470 pycom16g03590
rosa_chinensis	RchiOBHm_Chr2g0089781 RchiOBHm_Chr2g0161601 RchiOBHm_Chr4g0435001 RchiOBHm_Chr5g0057351 RchiOBHm_Chr6g0279821 RchiOBHm_Chr7g0227101
rosa_laevigata	RLG00000006630 RLG00000007926
rosa_multiflora	Rmu_co7981798.1_g000001 Rmu_co8240437.1_g000001 Rmu_sc0000400.1_g000034 Rmu_sc0000869.1_g000026 Rmu_sc0001246.1_g000017 Rmu_sc0002430.1_g000001 Rmu_sc0004574.1_g000051 Rmu_sc0009868.1_g000002 Rmu_sc0010765.1_g000001
rosa_roxburghii	Rroxscaffold_1G00019050 Rroxscaffold_2G00088100 Rroxscaffold_5G00376170
rosa_rugosa	Rorug02G0108200 Rorug02G0398300 Rorug02G0435100 Rorug03G0104500 Rorug03G0112000 Rorug03G0209100 Rorug04G0021800 Rorug04G0169800 Rorug04G0281500 Rorug04G0390300 Rorug05G0263200 Rorug05G0281200 Rorug06G0472700 Rorug07G0039700 Rorug07G0207300
rosa_samantha	Rh4AG337000 Rh4BG161500 Rh4BG344900 Rh4CG359600 Rh4DG339400 Rh5DG431200
rosa_wichuraiana	Rw4G029380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	143
AccII	CGCG	2 cut(s)	210, 234
AciI	CCGC	3 cut(s)	41, 232, 234
AclWI	GGATC	2 cut(s)	76, 164
AcoI	YGGCCR	1 cut(s)	229
AcyI	GRCGYC	1 cut(s)	35
AfiI	CCNNNNNNNGG	2 cut(s)	72, 153
AjnI	CCWGG	1 cut(s)	85
AluBI	AGCT	3 cut(s)	51, 63, 103
AluI	AGCT	3 cut(s)	51, 63, 103
AlwI	GGATC	2 cut(s)	76, 164
AlwNI	CAGNNNCTG	1 cut(s)	118
AoxI	GGCC	1 cut(s)	229
ApeKI	GCWGC	2 cut(s)	118, 222
AspS9I	GGNCC	1 cut(s)	90
AsuC2I	CCSGG	1 cut(s)	67
AvaII	GGWCC	1 cut(s)	90
BbvI	GCAGC	2 cut(s)	105, 234
BciT130I	CCWGG	1 cut(s)	87
BcnI	CCSGG	1 cut(s)	67
BfmI	CTRYAG	1 cut(s)	119
BglII	AGATCT	1 cut(s)	242
BisI	GCNGC	4 cut(s)	119, 223, 232, 235
BlsI	GCNGC	4 cut(s)	120, 224, 233, 236
Bme1390I	CCNGG	2 cut(s)	67, 87
Bme18I	GGWCC	1 cut(s)	90
BmgT120I	GGNCC	1 cut(s)	90
BmiI	GGNNCC	1 cut(s)	91
BmrFI	CCNGG	2 cut(s)	67, 87
BpuMI	CCSGG	1 cut(s)	67
BsaHI	GRCGYC	1 cut(s)	35
BsaJI	CCNNGG	4 cut(s)	85, 86, 147, 232
BsaXI	ACNNNNNCTCC	2 cut(s)	47, 77
Bsc4I	CCNNNNNNNGG	2 cut(s)	72, 153
BseBI	CCWGG	1 cut(s)	87
BseDI	CCNNGG	4 cut(s)	85, 86, 147, 232
BseLI	CCNNNNNNNGG	2 cut(s)	72, 153
BseXI	GCAGC	2 cut(s)	105, 234
Bsh1236I	CGCG	2 cut(s)	210, 234
Bsh1285I	CGRYCG	1 cut(s)	147
BshFI	GGCC	1 cut(s)	231
BsiEI	CGRYCG	1 cut(s)	147
BsiSI	CCGG	1 cut(s)	66
BslI	CCNNNNNNNGG	2 cut(s)	72, 153
BsnI	GGCC	1 cut(s)	231
Bsp143I	GATC	4 cut(s)	81, 156, 186, 242
BspACI	CCGC	3 cut(s)	41, 232, 234
BspANI	GGCC	1 cut(s)	231
BspFNI	CGCG	2 cut(s)	210, 234
BspLI	GGNNCC	1 cut(s)	91
BspMAI	CTGCAG	1 cut(s)	123
BspPI	GGATC	2 cut(s)	76, 164
BssECI	CCNNGG	4 cut(s)	85, 86, 147, 232
BssMI	GATC	4 cut(s)	81, 156, 186, 242
BssNI	GRCGYC	1 cut(s)	35
Bst2UI	CCWGG	1 cut(s)	87
Bst4CI	ACNGT	1 cut(s)	148
BstACI	GRCGYC	1 cut(s)	35
BstAPI	GCANNNNNTGC	1 cut(s)	118
BstDEI	CTNAG	1 cut(s)	246
BstDSI	CCRYGG	2 cut(s)	147, 232
BstFNI	CGCG	2 cut(s)	210, 234
BstKTI	GATC	4 cut(s)	84, 159, 189, 245
BstMBI	GATC	4 cut(s)	81, 156, 186, 242
BstMCI	CGRYCG	1 cut(s)	147
BstMWI	GCNNNNNNNGC	6 cut(s)	109, 118, 168, 222, 228, 231
BstNI	CCWGG	1 cut(s)	87
BstSCI	CCNGG	2 cut(s)	65, 85
BstSFI	CTRYAG	1 cut(s)	119
BstUI	CGCG	2 cut(s)	210, 234
BstV1I	GCAGC	2 cut(s)	105, 234
BstX2I	RGATCY	1 cut(s)	242
BstYI	RGATCY	1 cut(s)	242
BsuRI	GGCC	1 cut(s)	231
BtgI	CCRYGG	2 cut(s)	147, 232
CaiI	CAGNNNCTG	1 cut(s)	118
Cfr13I	GGNCC	1 cut(s)	90
Cfr42I	CCGCGG	1 cut(s)	235
CseI	GACGC	2 cut(s)	43, 216
CviJI	RGCY	4 cut(s)	51, 63, 103, 231
CviKI_1	RGCY	4 cut(s)	51, 63, 103, 231
DdeI	CTNAG	1 cut(s)	246
DpnI	GATC	4 cut(s)	83, 158, 188, 244
DpnII	GATC	4 cut(s)	81, 156, 186, 242
EaeI	YGGCCR	1 cut(s)	229
Eco47I	GGWCC	1 cut(s)	90
EcoRII	CCWGG	1 cut(s)	85
FauI	CCCGC	1 cut(s)	48
FblI	GTMKAC	1 cut(s)	143
Fnu4HI	GCNGC	4 cut(s)	119, 223, 232, 235
Fsp4HI	GCNGC	4 cut(s)	119, 223, 232, 235
GluI	GCNGC	4 cut(s)	119, 223, 232, 235
HaeIII	GGCC	1 cut(s)	231
HapII	CCGG	1 cut(s)	66
HgaI	GACGC	2 cut(s)	43, 216
Hin1I	GRCGYC	1 cut(s)	35
HincII	GTYRAC	1 cut(s)	144
HindII	GTYRAC	1 cut(s)	144
HinfI	GANTC	1 cut(s)	196
HpaII	CCGG	1 cut(s)	66
Hpy166II	GTNNAC	1 cut(s)	144
Hpy188I	TCNGA	3 cut(s)	94, 178, 191
Hpy8I	GTNNAC	1 cut(s)	144
Hpy99I	CGWCG	2 cut(s)	82, 145
HpyAV	CCTTC	1 cut(s)	146
HpyCH4III	ACNGT	1 cut(s)	148
HpyCH4V	TGCA	2 cut(s)	112, 121
HpyF10VI	GCNNNNNNNGC	6 cut(s)	109, 118, 168, 222, 228, 231
HpyF3I	CTNAG	1 cut(s)	246
Hsp92I	GRCGYC	1 cut(s)	35
KspI	CCGCGG	1 cut(s)	235
Kzo9I	GATC	4 cut(s)	81, 156, 186, 242
LmnI	GCTCC	1 cut(s)	68
LpnPI	CCDG	3 cut(s)	72, 79, 99
Lsp1109I	GCAGC	2 cut(s)	105, 234
MalI	GATC	4 cut(s)	83, 158, 188, 244
MboI	GATC	4 cut(s)	81, 156, 186, 242
MflI	RGATCY	1 cut(s)	242
MmeI	TCCRAC	1 cut(s)	117
MnlI	CCTC	3 cut(s)	119, 172, 197
MseI	TTAA	1 cut(s)	253
MspA1I	CMGCKG	1 cut(s)	234
MspI	CCGG	1 cut(s)	66
MspR9I	CCNGG	2 cut(s)	67, 87
MvaI	CCWGG	1 cut(s)	87
MvnI	CGCG	2 cut(s)	210, 234
MwoI	GCNNNNNNNGC	6 cut(s)	109, 118, 168, 222, 228, 231
NciI	CCSGG	1 cut(s)	67
NdeII	GATC	4 cut(s)	81, 156, 186, 242
NlaIV	GGNNCC	1 cut(s)	91
PasI	CCCWGGG	1 cut(s)	86
PcsI	WCGNNNNNNNCGW	1 cut(s)	77
PfeI	GAWTC	1 cut(s)	196
PkrI	GCNGC	4 cut(s)	120, 224, 233, 236
Psp6I	CCWGG	1 cut(s)	85
PspGI	CCWGG	1 cut(s)	85
PspN4I	GGNNCC	1 cut(s)	91
PspPI	GGNCC	1 cut(s)	90
PstI	CTGCAG	1 cut(s)	123
PstNI	CAGNNNCTG	1 cut(s)	118
PsuI	RGATCY	1 cut(s)	242
SacII	CCGCGG	1 cut(s)	235
SalI	GTCGAC	1 cut(s)	142
SaqAI	TTAA	1 cut(s)	253
SatI	GCNGC	4 cut(s)	119, 223, 232, 235
Sau3AI	GATC	4 cut(s)	81, 156, 186, 242
Sau96I	GGNCC	1 cut(s)	90
ScrFI	CCNGG	2 cut(s)	67, 87
SetI	ASST	4 cut(s)	53, 65, 105, 183
SfcI	CTRYAG	1 cut(s)	119
Sfr303I	CCGCGG	1 cut(s)	235
SgrBI	CCGCGG	1 cut(s)	235
SinI	GGWCC	1 cut(s)	90
SsiI	CCGC	3 cut(s)	41, 232, 234
StyD4I	CCNGG	2 cut(s)	65, 85
TaaI	ACNGT	1 cut(s)	148
TaqI	TCGA	4 cut(s)	54, 80, 99, 143
TauI	GCSGC	2 cut(s)	234, 237
TfiI	GAWTC	1 cut(s)	196
Tru1I	TTAA	1 cut(s)	253
Tru9I	TTAA	1 cut(s)	253
TseI	GCWGC	2 cut(s)	118, 222
VpaK11BI	GGWCC	1 cut(s)	90
XmiI	GTMKAC	1 cut(s)	143

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.