Prupe.1G312600_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0001093
Physical Location & Seq
Reverse (-)
30313768 .. 30315006
1239 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G312600.1

Sequence Viewer

Length: 936 bp
ATGGAAATTCCAGTAGTGAACAGAATAAGCGATTTTCAGTCCCGCATAACCTCGCTGCCGGACCCATCTTTTTTCTCACAGGCCTTTTCGATTTCCGTCATCGAAAGGGTCTCTCAAGCTTGCAGCTTTTGGAAATGGGGAGCTCTCATCATCGCAATTCTAGCTTCCTTCGGCACCATACTCACTAAAATAAACATTTTTATTACCAGACTCCGACGCCTAGGAGTTTTAAGCTCCCAGGCTGTTTCCCAGAAGCTCCAAGACGACGATTTCTCCGACATCGACGACGATGATGACGAAACCTGTTCCATTTCGTCGTCCTCCTCCTTGTCCGATGATGAATTAGAATCCGATTCCGAGATATCGTACGATAACGCCGGTACTCCCACTGCCAGGGATGAACATTTCCTAGTCAGGGGCTCTGGTTGTTACGGAGACGACCGAGGGCAGAATCGTAATTCGACGCTCCGCCGGCGCCGAAGCTTCGGAGGACACCACCGGTTCTCTTGGTCCGACTTCACCTCCGGCAAGAGTGTCGTCAAGCTCTGGGACACGTCTTCGCCGGCCACGTTTCTATCTGCGGACACAAGTGTCTCGGGGTGTGCGTCAATCGGTGTATGGGACACGCGCGTCGGATGCCGGTTTCCGGCAATACTCGCCGATTGGGGCCCGCAGCTCGGGAGAATCGTTGGAGTTGCGGCGGGCGGCGTCGAGAAGCTTTACGTCAAGGATGGCGTCACGGGGGCCTTGACGGTTGGTGACGTGAGGAAGGCGGAGTCGCCGTTGCGGAACGTAACGGACGCTGACATGGATGACACATGGTGGGATGCTGACGCCGTTATTCTGACGGACGAGCGTTTTGACGAGTCAGCCGTGAGTGGATGTGACTGGGCCGTCACGCGGTGTTGTAGCGCGGTTAGGTCTTATCTGTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

312

Amino Acids

34.03

Weight (kDa)

4.65

Isoelectric Point (pI)

42.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 3 cut(s) 590, 629, 893
AccB1I GGYRCC 2 cut(s) 173, 474
AccII CGCG 4 cut(s) 628, 630, 901, 914
AcoI YGGCCR 1 cut(s) 564
AcsI RAATTY 1 cut(s) 6
AcyI GRCGYC 5 cut(s) 217, 475, 708, 735, 834
AdeI CACNNNGTG 2 cut(s) 822, 903
AfaI GTAC 2 cut(s) 368, 382
AfiI CCNNNNNNNGG 5 cut(s) 393, 415, 646, 677, 900
AflIII ACRYGT 1 cut(s) 552
AgeI ACCGGT 1 cut(s) 498
AjiI CACGTC 2 cut(s) 555, 763
AjnI CCWGG 2 cut(s) 237, 392
Alw21I GWGCWC 1 cut(s) 145
Alw26I GTCTC 3 cut(s) 115, 429, 598
Ama87I CYCGRG 2 cut(s) 595, 677
AoxI GGCC 5 cut(s) 81, 564, 667, 744, 891
ApaI GGGCCC 1 cut(s) 671
ApeKI GCWGC 3 cut(s) 55, 123, 673
ApoI RAATTY 1 cut(s) 6
ArsI GACNNNNNNTTYG 2 cut(s) 842, 874
AsiGI ACCGGT 1 cut(s) 498
AspA2I CCTAGG 1 cut(s) 220
AspLEI GCGC 3 cut(s) 477, 630, 914
AspS9I GGNCC 6 cut(s) 61, 510, 667, 668, 744, 891
AsuHPI GGTGA 2 cut(s) 511, 770
AvaI CYCGRG 2 cut(s) 595, 677
AvaII GGWCC 2 cut(s) 61, 510
AvrII CCTAGG 1 cut(s) 220
BaeGI GKGCMC 1 cut(s) 671
BanI GGYRCC 2 cut(s) 173, 474
BanII GRGCYC 3 cut(s) 145, 422, 671
BbsI GAAGAC 1 cut(s) 549
Bbv12I GWGCWC 1 cut(s) 145
BbvI GCAGC 3 cut(s) 42, 135, 685
BccI CCATC 2 cut(s) 73, 725
BceAI ACGGC 4 cut(s) 766, 821, 857, 878
BcgI CGANNNNNNTGC 2 cut(s) 517, 551
BciT130I CCWGG 2 cut(s) 239, 394
BcoDI GTCTC 3 cut(s) 115, 429, 598
BfaI CTAG 3 cut(s) 161, 221, 410
BfoI RGCGCY 1 cut(s) 478
BisI GCNGC 5 cut(s) 56, 124, 674, 699, 706
BlnI CCTAGG 1 cut(s) 220
BlsI GCNGC 5 cut(s) 57, 125, 675, 700, 707
Bme1390I CCNGG 2 cut(s) 239, 394
Bme18I GGWCC 2 cut(s) 61, 510
BmeT110I CYCGRG 2 cut(s) 595, 677
BmgBI CACGTC 2 cut(s) 555, 763
BmgT120I GGNCC 6 cut(s) 61, 510, 667, 668, 744, 891
BmiI GGNNCC 6 cut(s) 63, 175, 476, 668, 669, 745
BmrFI CCNGG 2 cut(s) 239, 394
BmrI ACTGGG 1 cut(s) 898
BmsI GCATC 2 cut(s) 626, 817
BmuI ACTGGG 1 cut(s) 898
BpiI GAAGAC 1 cut(s) 549
BpuEI CTTGAG 1 cut(s) 99
BsaHI GRCGYC 5 cut(s) 217, 475, 708, 735, 834
BsaI GGTCTC 1 cut(s) 115
BsaJI CCNNGG 4 cut(s) 220, 237, 393, 442
BsaWI WCCGGW 1 cut(s) 498
BsaXI ACNNNNNCTCC 6 cut(s) 257, 287, 506, 536, 767, 797
Bsc4I CCNNNNNNNGG 5 cut(s) 393, 415, 646, 677, 900
Bse118I RCCGGY 5 cut(s) 377, 471, 498, 562, 639
Bse1I ACTGG 2 cut(s) 11, 893
BseBI CCWGG 2 cut(s) 239, 394
BseDI CCNNGG 4 cut(s) 220, 237, 393, 442
BseGI GGATG 6 cut(s) 403, 641, 736, 817, 832, 887
BseLI CCNNNNNNNGG 5 cut(s) 393, 415, 646, 677, 900
BseNI ACTGG 2 cut(s) 11, 893
BseRI GAGGAG 1 cut(s) 313
BseSI GKGCMC 1 cut(s) 671
BseXI GCAGC 3 cut(s) 42, 135, 685
Bsh1236I CGCG 4 cut(s) 628, 630, 901, 914
Bsh1285I CGRYCG 1 cut(s) 442
BshFI GGCC 5 cut(s) 83, 566, 669, 746, 893
BshNI GGYRCC 2 cut(s) 173, 474
BshTI ACCGGT 1 cut(s) 498
BsiEI CGRYCG 1 cut(s) 442
BsiHKAI GWGCWC 1 cut(s) 145
BsiHKCI CYCGRG 2 cut(s) 595, 677
BsiSI CCGG 8 cut(s) 59, 378, 472, 499, 525, 563, 640, 647
BsiWI CGTACG 1 cut(s) 366
BslFI GGGAC 3 cut(s) 25, 563, 635
BslI CCNNNNNNNGG 5 cut(s) 393, 415, 646, 677, 900
BsmAI GTCTC 3 cut(s) 115, 429, 598
BsmBI CGTCTC 1 cut(s) 429
BsmFI GGGAC 3 cut(s) 25, 563, 635
BsnI GGCC 5 cut(s) 83, 566, 669, 746, 893
Bso31I GGTCTC 1 cut(s) 115
BsoBI CYCGRG 2 cut(s) 595, 677
Bsp120I GGGCCC 1 cut(s) 667
Bsp1286I GDGCHC 3 cut(s) 145, 422, 671
BspANI GGCC 5 cut(s) 83, 566, 669, 746, 893
BspFNI CGCG 4 cut(s) 628, 630, 901, 914
BspLI GGNNCC 6 cut(s) 63, 175, 476, 668, 669, 745
BspT107I GGYRCC 2 cut(s) 173, 474
BspTNI GGTCTC 1 cut(s) 115
BsrFI RCCGGY 5 cut(s) 377, 471, 498, 562, 639
BsrI ACTGG 2 cut(s) 11, 893
BssAI RCCGGY 5 cut(s) 377, 471, 498, 562, 639
BssECI CCNNGG 4 cut(s) 220, 237, 393, 442
BssNI GRCGYC 5 cut(s) 217, 475, 708, 735, 834
BssT1I CCWWGG 1 cut(s) 220
Bst2UI CCWGG 2 cut(s) 239, 394
Bst4CI ACNGT 1 cut(s) 754
BstACI GRCGYC 5 cut(s) 217, 475, 708, 735, 834
BstC8I GCNNGC 5 cut(s) 121, 473, 564, 671, 703
BstF5I GGATG 6 cut(s) 403, 641, 736, 817, 832, 887
BstFNI CGCG 4 cut(s) 628, 630, 901, 914
BstH2I RGCGCY 1 cut(s) 478
BstHHI GCGC 3 cut(s) 477, 630, 914
BstMAI GTCTC 3 cut(s) 115, 429, 598
BstMCI CGRYCG 1 cut(s) 442
BstMWI GCNNNNNNNGC 4 cut(s) 161, 472, 636, 656
BstNI CCWGG 2 cut(s) 239, 394
BstSCI CCNGG 2 cut(s) 237, 392
BstSLI GKGCMC 1 cut(s) 671
BstUI CGCG 4 cut(s) 628, 630, 901, 914
BstV1I GCAGC 3 cut(s) 42, 135, 685
BstV2I GAAGAC 1 cut(s) 549
BsuRI GGCC 5 cut(s) 83, 566, 669, 746, 893
BtgZI GCGATG 1 cut(s) 136
BtrI CACGTC 2 cut(s) 555, 763
BtsCI GGATG 6 cut(s) 403, 641, 736, 817, 832, 887
BtsI GCAGTG 1 cut(s) 387
BtsIMutI CAGTG 1 cut(s) 387
Cac8I GCNNGC 5 cut(s) 121, 473, 564, 671, 703
CfoI GCGC 3 cut(s) 477, 630, 914
Cfr10I RCCGGY 5 cut(s) 377, 471, 498, 562, 639
Cfr13I GGNCC 6 cut(s) 61, 510, 667, 668, 744, 891
CseI GACGC 8 cut(s) 225, 472, 594, 619, 697, 724, 809, 842
Csp6I GTAC 2 cut(s) 367, 381
CspAI ACCGGT 1 cut(s) 498
CviAII CATG 2 cut(s) 808, 819
CviQI GTAC 2 cut(s) 367, 381
DinI GGCGCC 1 cut(s) 476
DraIII CACNNNGTG 2 cut(s) 822, 903
DrdI GACNNNNNNGTC 3 cut(s) 590, 629, 893
DseDI GACNNNNNNGTC 3 cut(s) 590, 629, 893
EaeI YGGCCR 1 cut(s) 564
EciI GGCGGA 2 cut(s) 458, 788
Ecl136II GAGCTC 1 cut(s) 143
Eco130I CCWWGG 1 cut(s) 220
Eco147I AGGCCT 1 cut(s) 83
Eco24I GRGCYC 3 cut(s) 145, 422, 671
Eco31I GGTCTC 1 cut(s) 115
Eco32I GATATC 1 cut(s) 363
Eco47I GGWCC 2 cut(s) 61, 510
Eco53kI GAGCTC 1 cut(s) 143
Eco88I CYCGRG 2 cut(s) 595, 677
EcoICRI GAGCTC 1 cut(s) 143
EcoO109I RGGNCCY 2 cut(s) 667, 744
EcoRII CCWGG 2 cut(s) 237, 392
EcoRV GATATC 1 cut(s) 363
EcoT14I CCWWGG 1 cut(s) 220
EcoT38I GRGCYC 3 cut(s) 145, 422, 671
EgeI GGCGCC 1 cut(s) 476
EheI GGCGCC 1 cut(s) 476
ErhI CCWWGG 1 cut(s) 220
Esp3I CGTCTC 1 cut(s) 429
FaeI CATG 2 cut(s) 811, 822
FaiI YATR 5 cut(s) 47, 179, 619, 809, 820
FaqI GGGAC 3 cut(s) 25, 563, 635
FatI CATG 2 cut(s) 807, 818
FauI CCCGC 3 cut(s) 50, 678, 694
Fnu4HI GCNGC 5 cut(s) 56, 124, 674, 699, 706
FokI GGATG 6 cut(s) 410, 648, 743, 824, 839, 894
FriOI GRGCYC 3 cut(s) 145, 422, 671
Fsp4HI GCNGC 5 cut(s) 56, 124, 674, 699, 706
FspBI CTAG 3 cut(s) 161, 221, 410
GlaI GCGC 3 cut(s) 476, 629, 913
GluI GCNGC 5 cut(s) 56, 124, 674, 699, 706
HaeII RGCGCY 1 cut(s) 478
HaeIII GGCC 5 cut(s) 83, 566, 669, 746, 893
HapII CCGG 8 cut(s) 59, 378, 472, 499, 525, 563, 640, 647
HgaI GACGC 8 cut(s) 225, 472, 594, 619, 697, 724, 809, 842
HhaI GCGC 3 cut(s) 477, 630, 914
Hin1I GRCGYC 5 cut(s) 217, 475, 708, 735, 834
Hin1II CATG 2 cut(s) 811, 822
Hin6I GCGC 3 cut(s) 475, 628, 912
HinP1I GCGC 3 cut(s) 475, 628, 912
HindIII AAGCTT 3 cut(s) 117, 481, 716
HinfI GANTC 7 cut(s) 210, 347, 353, 451, 684, 776, 866
HpaII CCGG 8 cut(s) 59, 378, 472, 499, 525, 563, 640, 647
HphI GGTGA 2 cut(s) 511, 770
Hpy166II GTNNAC 1 cut(s) 19
Hpy188I TCNGA 9 cut(s) 215, 277, 334, 352, 358, 488, 514, 635, 846
Hpy188III TCNNGA 2 cut(s) 679, 712
Hpy8I GTNNAC 1 cut(s) 19
Hpy99I CGWCG 8 cut(s) 219, 269, 287, 290, 319, 466, 635, 713
HpyAV CCTTC 2 cut(s) 178, 763
HpyCH4III ACNGT 1 cut(s) 754
HpyCH4IV ACGT 5 cut(s) 554, 569, 723, 762, 792
HpyCH4V TGCA 1 cut(s) 123
HpyF10VI GCNNNNNNNGC 4 cut(s) 161, 472, 636, 656
HpySE526I ACGT 5 cut(s) 554, 569, 723, 762, 792
Hsp92I GRCGYC 5 cut(s) 217, 475, 708, 735, 834
Hsp92II CATG 2 cut(s) 811, 822
HspAI GCGC 3 cut(s) 475, 628, 912
KasI GGCGCC 1 cut(s) 474
KroI GCCGGC 2 cut(s) 471, 562
KroNI GCCGGC 2 cut(s) 473, 564
LmnI GCTCC 4 cut(s) 140, 239, 261, 471
Lsp1109I GCAGC 3 cut(s) 42, 135, 685
LweI GCATC 2 cut(s) 626, 817
MaeI CTAG 3 cut(s) 161, 221, 410
MaeII ACGT 5 cut(s) 554, 569, 723, 762, 792
MaeIII GTNAC 6 cut(s) 428, 736, 758, 793, 884, 895
MboII GAAGA 1 cut(s) 549
MhlI GDGCHC 3 cut(s) 145, 422, 671
MluCI AATT 4 cut(s) 6, 156, 341, 457
Mly113I GGCGCC 1 cut(s) 475
MlyI GAGTC 3 cut(s) 204, 785, 875
MmeI TCCRAC 5 cut(s) 238, 300, 537, 613, 670
MnlI CCTC 7 cut(s) 61, 331, 334, 437, 482, 532, 759
MreI CGCCGGCG 1 cut(s) 471
MroNI GCCGGC 2 cut(s) 471, 562
MseI TTAA 1 cut(s) 230
MspI CCGG 8 cut(s) 59, 378, 472, 499, 525, 563, 640, 647
MspR9I CCNGG 2 cut(s) 239, 394
MvaI CCWGG 2 cut(s) 239, 394
MvnI CGCG 4 cut(s) 628, 630, 901, 914
MwoI GCNNNNNNNGC 4 cut(s) 161, 472, 636, 656
NaeI GCCGGC 2 cut(s) 473, 564
NarI GGCGCC 1 cut(s) 475
NgoMIV GCCGGC 2 cut(s) 471, 562
NlaIII CATG 2 cut(s) 811, 822
NlaIV GGNNCC 6 cut(s) 63, 175, 476, 668, 669, 745
NmuCI GTSAC 4 cut(s) 736, 758, 884, 895
PceI AGGCCT 1 cut(s) 83
PcsI WCGNNNNNNNCGW 6 cut(s) 273, 294, 566, 602, 684, 870
PdiI GCCGGC 2 cut(s) 473, 564
PfeI GAWTC 4 cut(s) 347, 353, 451, 684
Pfl23II CGTACG 1 cut(s) 366
PinAI ACCGGT 1 cut(s) 498
PkrI GCNGC 5 cut(s) 57, 125, 675, 700, 707
PleI GAGTC 3 cut(s) 204, 784, 874
PluTI GGCGCC 1 cut(s) 478
PpsI GAGTC 3 cut(s) 204, 784, 874
Psp124BI GAGCTC 1 cut(s) 145
Psp6I CCWGG 2 cut(s) 237, 392
PspGI CCWGG 2 cut(s) 237, 392
PspLI CGTACG 1 cut(s) 366
PspN4I GGNNCC 6 cut(s) 63, 175, 476, 668, 669, 745
PspOMI GGGCCC 1 cut(s) 667
PspPI GGNCC 6 cut(s) 61, 510, 667, 668, 744, 891
RsaI GTAC 2 cut(s) 368, 382
RsaNI GTAC 2 cut(s) 367, 381
SacI GAGCTC 1 cut(s) 145
SaqAI TTAA 1 cut(s) 230
SatI GCNGC 5 cut(s) 56, 124, 674, 699, 706
Sau96I GGNCC 6 cut(s) 61, 510, 667, 668, 744, 891
SchI GAGTC 3 cut(s) 204, 785, 875
ScrFI CCNGG 2 cut(s) 239, 394
SduI GDGCHC 3 cut(s) 145, 422, 671
SfaNI GCATC 2 cut(s) 626, 817
SfoI GGCGCC 1 cut(s) 476
SgrAI CRCCGGYG 1 cut(s) 471
SinI GGWCC 2 cut(s) 61, 510
SmlI CTYRAG 1 cut(s) 114
SmoI CTYRAG 1 cut(s) 114
Sse9I AATT 4 cut(s) 6, 156, 341, 457
SseBI AGGCCT 1 cut(s) 83
SspDI GGCGCC 1 cut(s) 474
SspMI CTAG 3 cut(s) 161, 221, 410
SstI GAGCTC 1 cut(s) 145
StuI AGGCCT 1 cut(s) 83
StyD4I CCNGG 2 cut(s) 237, 392
StyI CCWWGG 1 cut(s) 220
TaaI ACNGT 1 cut(s) 754
TaiI ACGT 5 cut(s) 557, 572, 726, 765, 795
TaqI TCGA 5 cut(s) 89, 102, 282, 461, 711
TaqII GACCGA 1 cut(s) 456
TasI AATT 4 cut(s) 6, 156, 341, 457
TauI GCSGC 2 cut(s) 701, 708
TfiI GAWTC 4 cut(s) 347, 353, 451, 684
Tru1I TTAA 1 cut(s) 230
Tru9I TTAA 1 cut(s) 230
TscAI CASTG 1 cut(s) 394
TseFI GTSAC 4 cut(s) 736, 758, 884, 895
TseI GCWGC 3 cut(s) 55, 123, 673
Tsp45I GTSAC 4 cut(s) 736, 758, 884, 895
TspDTI ATGAA 2 cut(s) 354, 414
TspGWI ACGGA 4 cut(s) 85, 447, 812, 863
TspRI CASTG 1 cut(s) 394
VpaK11BI GGWCC 2 cut(s) 61, 510
XapI RAATTY 1 cut(s) 6
XmaJI CCTAGG 1 cut(s) 220
XspI CTAG 3 cut(s) 161, 221, 410
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.