Rmu_sc0010765.1_g000001

Pentatricopeptide repeat-containing protein At1g30610

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0010765.1
Physical Location & Seq
Reverse (-)
1736 .. 4578
2843 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0010765.1_g000001.1.cds

Sequence Viewer

Length: 1344 bp
atggaaattggtcgagatataccagaacaagaattgcacttcaacttgggaaagggtgcattggcacgaaatgctaaagaaagcccaagagattacaagtcaactggtcaagactttgagagaaggaaaagtggtgttagaagtgaagatggatttgagaggtaccgcgtcagtgctgagaaagccactgataatagagttttctctcctagaagtggaaattcaaccaagaacggaagagatttccctaggagagactatgatgaaagagctgcatttaagaattttgatgaattcagtgatattatggacaagccacgagtttcgcaaatgcaaatggaggagagaatccagaagctagcaaaatcagttattcagatattagtttttgtttgctgctccgagaaaacaggcgagagaggtctagggttggaaagacagaggttggcgttgaggcctgtccggcggcgctcctgcgttgatggcgacttcctgccccgtcgacgagtggtgggtgttgccggatgggttcctgaggctctaggattcttctttttctttgggtttaggtgctcttggctatgtaggctttttcatctttctcaagcagcggcgaagacgatggtgaagggtactcggctatcggcgacgggaaggtgtttagtgaccagatcgtggtggcggcaggccatggatcgtatggcactggtcttttctctgaggcgtgtggctgggtggaggatagagtgtttgaaagggattctcgaattgatgggaggccggattggtttcagatcaatttgggatggatttgcacaatggtcggtaatgagtttcaaccaaggaggatggtggtggcctgagatcccaagctggtcgtggcagagtacttggcttgggtgtcttcgatggggtgtgctctcttggctgcactcatggtggtttgtcgtcggtctgttgtcaatggtgaggaagatggaagtggttcaacatagcctgccatatgtatggtgttactcctgggaacaaggtgttacaatttcgatgctgtttggttatcaacggaaaggtggatttcccttgcacgtggtctggcggtttatggacacggtgtggaagagggtggagtggttcgtctggatgttggtgacgaggtcgtatcgggacactcaggattggttatcgttctgtgtagcctggggtgataggcgtaaaaattggttagggattggaccttttcggttcatggaagattctattagtgacggacccataactagggatcttgataggaatatgtgtcgtggtgttgataccacaaccagttattccaatgctttgtaa

Protein Analysis

447

Amino Acids

52.45

Weight (kDa)

9.86

Isoelectric Point (pI)

44.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 162
AccB1I GGYRCC 1 cut(s) 162
AccB7I CCANNNNNTGG 1 cut(s) 675
AccI GTMKAC 1 cut(s) 502
AccII CGCG 1 cut(s) 168
AciI CCGC 5 cut(s) 166, 466, 611, 682, 1096
AclWI GGATC 3 cut(s) 702, 859, 1290
AcsI RAATTY 3 cut(s) 220, 283, 293
AcvI CACGTG 1 cut(s) 1087
AdeI CACNNNGTG 1 cut(s) 1113
AfaI GTAC 3 cut(s) 164, 634, 889
AfiI CCNNNNNNNGG 3 cut(s) 215, 675, 1278
AgsI TTSAA 5 cut(s) 43, 225, 754, 838, 989
AjnI CCWGG 2 cut(s) 1019, 1196
AluBI AGCT 3 cut(s) 272, 358, 873
AluI AGCT 3 cut(s) 272, 358, 873
Alw21I GWGCWC 2 cut(s) 575, 921
Alw26I GTCTC 1 cut(s) 249
AlwI GGATC 3 cut(s) 702, 859, 1290
AoxI GGCC 4 cut(s) 455, 687, 778, 857
ApeKI GCWGC 4 cut(s) 272, 396, 608, 928
ApoI RAATTY 3 cut(s) 220, 283, 293
Asp700I GAANNNNTTC 1 cut(s) 984
Asp718I GGTACC 1 cut(s) 162
AspA2I CCTAGG 1 cut(s) 248
AspLEI GCGC 1 cut(s) 471
AspS9I GGNCC 2 cut(s) 1232, 1268
AsuHPI GGTGA 4 cut(s) 637, 979, 1159, 1214
AsuNHI GCTAGC 1 cut(s) 358
AvaII GGWCC 2 cut(s) 1232, 1268
AvrII CCTAGG 1 cut(s) 248
AxyI CCTNAGG 1 cut(s) 534
BanI GGYRCC 1 cut(s) 162
BauI CACGAG 1 cut(s) 318
BbrPI CACGTG 1 cut(s) 1087
BbsI GAAGAC 2 cut(s) 623, 896
Bbv12I GWGCWC 2 cut(s) 575, 921
BbvI GCAGC 4 cut(s) 259, 383, 620, 915
BccI CCATC 9 cut(s) 143, 476, 519, 616, 766, 800, 843, 903, 970
BcgI CGANNNNNNTGC 2 cut(s) 804, 838
BciT130I CCWGG 2 cut(s) 1021, 1198
BcoDI GTCTC 1 cut(s) 249
BfaI CTAG 6 cut(s) 210, 249, 359, 425, 542, 1278
BfoI RGCGCY 1 cut(s) 472
BglI GCCNNNNNGGC 1 cut(s) 463
BisI GCNGC 7 cut(s) 273, 397, 467, 609, 612, 683, 929
BlnI CCTAGG 1 cut(s) 248
BlsI GCNGC 7 cut(s) 274, 398, 468, 610, 613, 684, 930
BmcAI AGTACT 1 cut(s) 889
Bme1390I CCNGG 2 cut(s) 1021, 1198
Bme18I GGWCC 2 cut(s) 1232, 1268
BmgT120I GGNCC 2 cut(s) 1232, 1268
BmiI GGNNCC 3 cut(s) 164, 531, 1270
BmrFI CCNGG 2 cut(s) 1021, 1198
BmsI GCATC 1 cut(s) 1035
BmtI GCTAGC 1 cut(s) 362
BpiI GAAGAC 2 cut(s) 623, 896
BpuEI CTTGAG 1 cut(s) 588
BsaAI YACGTR 1 cut(s) 1087
BsaJI CCNNGG 5 cut(s) 248, 690, 841, 1020, 1197
Bsc4I CCNNNNNNNGG 3 cut(s) 215, 675, 1278
Bse1I ACTGG 3 cut(s) 109, 711, 1323
Bse21I CCTNAGG 1 cut(s) 534
BseBI CCWGG 2 cut(s) 1021, 1198
BseDI CCNNGG 5 cut(s) 248, 690, 841, 1020, 1197
BseGI GGATG 4 cut(s) 530, 811, 854, 1146
BseLI CCNNNNNNNGG 3 cut(s) 215, 675, 1278
BseMII CTCAG 5 cut(s) 168, 525, 710, 852, 1184
BseNI ACTGG 3 cut(s) 109, 711, 1323
BseRI GAGGAG 1 cut(s) 356
BseXI GCAGC 4 cut(s) 259, 383, 620, 915
BseYI CCCAGC 1 cut(s) 731
BsgI GTGCAG 1 cut(s) 914
Bsh1236I CGCG 1 cut(s) 168
BshFI GGCC 4 cut(s) 457, 689, 780, 859
BshNI GGYRCC 1 cut(s) 162
BsiHKAI GWGCWC 2 cut(s) 575, 921
BsiSI CCGG 3 cut(s) 463, 522, 781
BslFI GGGAC 1 cut(s) 1178
BslI CCNNNNNNNGG 3 cut(s) 215, 675, 1278
BsmAI GTCTC 1 cut(s) 249
BsmFI GGGAC 1 cut(s) 1178
BsnI GGCC 4 cut(s) 457, 689, 780, 859
Bsp1286I GDGCHC 2 cut(s) 575, 921
Bsp143I GATC 5 cut(s) 671, 694, 794, 864, 1282
Bsp19I CCATGG 1 cut(s) 690
BspACI CCGC 5 cut(s) 166, 466, 611, 682, 1096
BspANI GGCC 4 cut(s) 457, 689, 780, 859
BspCNI CTCAG 5 cut(s) 169, 526, 711, 853, 1183
BspFNI CGCG 1 cut(s) 168
BspLI GGNNCC 3 cut(s) 164, 531, 1270
BspOI GCTAGC 1 cut(s) 362
BspPI GGATC 3 cut(s) 702, 859, 1290
BspT107I GGYRCC 1 cut(s) 162
BsrI ACTGG 3 cut(s) 109, 711, 1323
BssECI CCNNGG 5 cut(s) 248, 690, 841, 1020, 1197
BssMI GATC 5 cut(s) 671, 694, 794, 864, 1282
BssSI CACGAG 1 cut(s) 318
BssT1I CCWWGG 3 cut(s) 248, 690, 841
Bst2BI CACGAG 1 cut(s) 318
Bst2UI CCWGG 2 cut(s) 1021, 1198
Bst4CI ACNGT 1 cut(s) 1111
Bst6I CTCTTC 2 cut(s) 232, 1112
BstAPI GCANNNNNTGC 1 cut(s) 71
BstBAI YACGTR 1 cut(s) 1087
BstC8I GCNNGC 3 cut(s) 360, 687, 998
BstDEI CTNAG 5 cut(s) 177, 534, 719, 861, 1170
BstDSI CCRYGG 1 cut(s) 690
BstF5I GGATG 4 cut(s) 530, 811, 854, 1146
BstFNI CGCG 1 cut(s) 168
BstH2I RGCGCY 1 cut(s) 472
BstHHI GCGC 1 cut(s) 471
BstKTI GATC 5 cut(s) 674, 697, 797, 867, 1285
BstMAI GTCTC 1 cut(s) 249
BstMBI GATC 5 cut(s) 671, 694, 794, 864, 1282
BstMWI GCNNNNNNNGC 6 cut(s) 71, 182, 463, 483, 586, 925
BstNI CCWGG 2 cut(s) 1021, 1198
BstSCI CCNGG 2 cut(s) 1019, 1196
BstUI CGCG 1 cut(s) 168
BstV1I GCAGC 4 cut(s) 259, 383, 620, 915
BstV2I GAAGAC 2 cut(s) 623, 896
BstX2I RGATCY 2 cut(s) 864, 1282
BstXI CCANNNNNNTGG 1 cut(s) 1008
BstYI RGATCY 2 cut(s) 864, 1282
Bsu36I CCTNAGG 1 cut(s) 534
BsuRI GGCC 4 cut(s) 457, 689, 780, 859
BtgI CCRYGG 1 cut(s) 690
BtsCI GGATG 4 cut(s) 530, 811, 854, 1146
BtsIMutI CAGTG 4 cut(s) 178, 186, 304, 704
Cac8I GCNNGC 3 cut(s) 360, 687, 998
CfoI GCGC 1 cut(s) 471
Cfr13I GGNCC 2 cut(s) 1232, 1268
CseI GACGC 1 cut(s) 157
Csp6I GTAC 3 cut(s) 163, 633, 888
CviAII CATG 3 cut(s) 691, 936, 1246
CviQI GTAC 3 cut(s) 163, 633, 888
DdeI CTNAG 5 cut(s) 177, 534, 719, 861, 1170
DpnI GATC 5 cut(s) 673, 696, 796, 866, 1284
DpnII GATC 5 cut(s) 671, 694, 794, 864, 1282
DraIII CACNNNGTG 1 cut(s) 1113
Eam1104I CTCTTC 2 cut(s) 232, 1112
EarI CTCTTC 2 cut(s) 232, 1112
Eco130I CCWWGG 3 cut(s) 248, 690, 841
Eco147I AGGCCT 1 cut(s) 457
Eco47I GGWCC 2 cut(s) 1232, 1268
Eco72I CACGTG 1 cut(s) 1087
Eco81I CCTNAGG 1 cut(s) 534
EcoRI GAATTC 1 cut(s) 293
EcoRII CCWGG 2 cut(s) 1019, 1196
EcoT14I CCWWGG 3 cut(s) 248, 690, 841
ErhI CCWWGG 3 cut(s) 248, 690, 841
FaeI CATG 3 cut(s) 694, 939, 1249
FaqI GGGAC 1 cut(s) 1178
FatI CATG 3 cut(s) 690, 935, 1245
FauNDI CATATG 1 cut(s) 1003
FblI GTMKAC 1 cut(s) 502
Fnu4HI GCNGC 7 cut(s) 273, 397, 467, 609, 612, 683, 929
FokI GGATG 4 cut(s) 537, 818, 861, 1153
Fsp4HI GCNGC 7 cut(s) 273, 397, 467, 609, 612, 683, 929
FspBI CTAG 6 cut(s) 210, 249, 359, 425, 542, 1278
GlaI GCGC 1 cut(s) 470
GluI GCNGC 7 cut(s) 273, 397, 467, 609, 612, 683, 929
GsaI CCCAGC 1 cut(s) 735
HaeII RGCGCY 1 cut(s) 472
HaeIII GGCC 4 cut(s) 457, 689, 780, 859
HapII CCGG 3 cut(s) 463, 522, 781
HgaI GACGC 1 cut(s) 157
HhaI GCGC 1 cut(s) 471
Hin1II CATG 3 cut(s) 694, 939, 1249
Hin6I GCGC 1 cut(s) 469
HinP1I GCGC 1 cut(s) 469
HincII GTYRAC 2 cut(s) 102, 503
HindII GTYRAC 2 cut(s) 102, 503
HinfI GANTC 4 cut(s) 348, 546, 760, 1253
HpaII CCGG 3 cut(s) 463, 522, 781
HphI GGTGA 4 cut(s) 637, 979, 1159, 1214
Hpy166II GTNNAC 2 cut(s) 102, 503
Hpy188I TCNGA 4 cut(s) 378, 403, 720, 794
Hpy188III TCNNGA 9 cut(s) 14, 110, 352, 533, 764, 1138, 1163, 1172, 1286
Hpy8I GTNNAC 2 cut(s) 102, 503
Hpy99I CGWCG 4 cut(s) 504, 507, 652, 953
HpyAV CCTTC 3 cut(s) 117, 622, 648
HpyCH4III ACNGT 1 cut(s) 1111
HpyCH4IV ACGT 1 cut(s) 1086
HpyCH4V TGCA 7 cut(s) 37, 59, 275, 334, 815, 931, 1084
HpyF10VI GCNNNNNNNGC 6 cut(s) 71, 182, 463, 483, 586, 925
HpyF3I CTNAG 5 cut(s) 177, 534, 719, 861, 1170
HpySE526I ACGT 1 cut(s) 1086
Hsp92II CATG 3 cut(s) 694, 939, 1249
HspAI GCGC 1 cut(s) 469
KpnI GGTACC 1 cut(s) 166
Kzo9I GATC 5 cut(s) 671, 694, 794, 864, 1282
LmnI GCTCC 2 cut(s) 404, 476
Lsp1109I GCAGC 4 cut(s) 259, 383, 620, 915
LweI GCATC 1 cut(s) 1035
MaeI CTAG 6 cut(s) 210, 249, 359, 425, 542, 1278
MaeII ACGT 1 cut(s) 1086
MaeIII GTNAC 5 cut(s) 664, 1013, 1033, 1147, 1262
MalI GATC 5 cut(s) 673, 696, 796, 866, 1284
MboI GATC 5 cut(s) 671, 694, 794, 864, 1282
MboII GAAGA 8 cut(s) 158, 249, 541, 628, 896, 985, 1129, 1262
MflI RGATCY 2 cut(s) 864, 1282
MhlI GDGCHC 2 cut(s) 575, 921
MluCI AATT 9 cut(s) 6, 32, 220, 283, 293, 767, 798, 1038, 1216
MmeI TCCRAC 1 cut(s) 411
MroXI GAANNNNTTC 1 cut(s) 984
MseI TTAA 1 cut(s) 279
MslI CAYNNNNRTG 1 cut(s) 1006
MspA1I CMGCKG 1 cut(s) 611
MspI CCGG 3 cut(s) 463, 522, 781
MspR9I CCNGG 2 cut(s) 1021, 1198
MvaI CCWGG 2 cut(s) 1021, 1198
MvnI CGCG 1 cut(s) 168
MwoI GCNNNNNNNGC 6 cut(s) 71, 182, 463, 483, 586, 925
NcoI CCATGG 1 cut(s) 690
NdeI CATATG 1 cut(s) 1003
NdeII GATC 5 cut(s) 671, 694, 794, 864, 1282
NheI GCTAGC 1 cut(s) 358
NlaIII CATG 3 cut(s) 694, 939, 1249
NlaIV GGNNCC 3 cut(s) 164, 531, 1270
NmeAIII GCCGAG 1 cut(s) 616
NmuCI GTSAC 3 cut(s) 664, 1147, 1262
PceI AGGCCT 1 cut(s) 457
PdmI GAANNNNTTC 1 cut(s) 984
PfeI GAWTC 4 cut(s) 348, 546, 760, 1253
PflFI GACNNNGTC 1 cut(s) 1153
PflMI CCANNNNNTGG 1 cut(s) 675
PkrI GCNGC 7 cut(s) 274, 398, 468, 610, 613, 684, 930
PmaCI CACGTG 1 cut(s) 1087
PmlI CACGTG 1 cut(s) 1087
Ppu21I YACGTR 1 cut(s) 1087
Psp6I CCWGG 2 cut(s) 1019, 1196
PspCI CACGTG 1 cut(s) 1087
PspFI CCCAGC 1 cut(s) 731
PspGI CCWGG 2 cut(s) 1019, 1196
PspN4I GGNNCC 3 cut(s) 164, 531, 1270
PspPI GGNCC 2 cut(s) 1232, 1268
PsuI RGATCY 2 cut(s) 864, 1282
PsyI GACNNNGTC 1 cut(s) 1153
RsaI GTAC 3 cut(s) 164, 634, 889
RsaNI GTAC 3 cut(s) 163, 633, 888
RseI CAYNNNNRTG 1 cut(s) 1006
SalI GTCGAC 1 cut(s) 501
SaqAI TTAA 1 cut(s) 279
SatI GCNGC 7 cut(s) 273, 397, 467, 609, 612, 683, 929
Sau3AI GATC 5 cut(s) 671, 694, 794, 864, 1282
Sau96I GGNCC 2 cut(s) 1232, 1268
ScaI AGTACT 1 cut(s) 889
ScrFI CCNGG 2 cut(s) 1021, 1198
SduI GDGCHC 2 cut(s) 575, 921
SfaNI GCATC 1 cut(s) 1035
SgrDI CGTCGACG 1 cut(s) 501
SinI GGWCC 2 cut(s) 1232, 1268
SmiMI CAYNNNNRTG 1 cut(s) 1006
SmlI CTYRAG 1 cut(s) 603
SmoI CTYRAG 1 cut(s) 603
Sse9I AATT 9 cut(s) 6, 32, 220, 283, 293, 767, 798, 1038, 1216
SseBI AGGCCT 1 cut(s) 457
SsiI CCGC 5 cut(s) 166, 466, 611, 682, 1096
SspMI CTAG 6 cut(s) 210, 249, 359, 425, 542, 1278
StuI AGGCCT 1 cut(s) 457
StyD4I CCNGG 2 cut(s) 1019, 1196
StyI CCWWGG 3 cut(s) 248, 690, 841
TaaI ACNGT 1 cut(s) 1111
TaiI ACGT 1 cut(s) 1089
TaqI TCGA 5 cut(s) 13, 502, 765, 907, 1043
TaqII GACCGA 1 cut(s) 941
TasI AATT 9 cut(s) 6, 32, 220, 283, 293, 767, 798, 1038, 1216
TatI WGTACW 1 cut(s) 887
TauI GCSGC 3 cut(s) 469, 614, 685
TfiI GAWTC 4 cut(s) 348, 546, 760, 1253
Tru1I TTAA 1 cut(s) 279
Tru9I TTAA 1 cut(s) 279
TscAI CASTG 4 cut(s) 178, 193, 304, 711
TseFI GTSAC 3 cut(s) 664, 1147, 1262
TseI GCWGC 4 cut(s) 272, 396, 608, 928
Tsp45I GTSAC 3 cut(s) 664, 1147, 1262
TspDTI ATGAA 4 cut(s) 279, 306, 584, 1234
TspGWI ACGGA 3 cut(s) 249, 1078, 1281
TspRI CASTG 4 cut(s) 178, 193, 304, 711
Tth111I GACNNNGTC 1 cut(s) 1153
Van91I CCANNNNNTGG 1 cut(s) 675
VpaK11BI GGWCC 2 cut(s) 1232, 1268
XapI RAATTY 3 cut(s) 220, 283, 293
XcmI CCANNNNNNNNNTGG 2 cut(s) 697, 876
XmaJI CCTAGG 1 cut(s) 248
XmiI GTMKAC 1 cut(s) 502
XmnI GAANNNNTTC 1 cut(s) 984
XspI CTAG 6 cut(s) 210, 249, 359, 425, 542, 1278
ZrmI AGTACT 1 cut(s) 889
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.