Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8240437.1

Orthogroup ID

OG0001093

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 408

Gene Structure 408 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8240437.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

gtcgggtacaagttcgagctgctcagcacgattctggccaactccaccgtcagcgcgtcgaacggcgggaagttcacgatcgacttgacgtcgagtctgacgccggtgaacagtccgcacagcagcttcgacttcgggtccgggtcgggttcgtcgaggcccgggtcggggtccgggtcggacttcgggttcgggttgatacctcagctgctgcagagagggtttgtgatgtcgtcgacggtggaggggatcgggaagtgtagcaagccagaggtggaggtcggagtgcagcacgtgacatgcacggaggacgcggccgcttacgtggcgttggcggcggcgatggatctgagcatggatgcttgccggccgttttcacataagctccggaaggagctgaggcaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1005

Protein Analysis

135

Amino Acids

14.09

Weight (kDa)

6.31

Isoelectric Point (pI)

43.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001093)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G25400 AT1G25400 AT1G68440
fragaria_vesca	FvH4_4g27210 FvH4_5g09320 FvH4_5g18320 FvH4_5g36190 FvH4_5g36660 FvH4_6g02080 FvH4_6g18410 FvH4_6g37922 FvH4_6g48101
malus_domestica	MD13G1040500.v1.1 MD16G1041500.v1.1
prunus_persica	Prupe.1G312600_v2.0.a1
pyrus_communis	pycom13g03470 pycom16g03590
rosa_chinensis	RchiOBHm_Chr2g0089781 RchiOBHm_Chr2g0161601 RchiOBHm_Chr4g0435001 RchiOBHm_Chr5g0057351 RchiOBHm_Chr6g0279821 RchiOBHm_Chr7g0227101
rosa_laevigata	RLG00000006630 RLG00000007926
rosa_multiflora	Rmu_co7981798.1_g000001 Rmu_co8240437.1_g000001 Rmu_sc0000400.1_g000034 Rmu_sc0000869.1_g000026 Rmu_sc0001246.1_g000017 Rmu_sc0002430.1_g000001 Rmu_sc0004574.1_g000051 Rmu_sc0009868.1_g000002 Rmu_sc0010765.1_g000001
rosa_roxburghii	Rroxscaffold_1G00019050 Rroxscaffold_2G00088100 Rroxscaffold_5G00376170
rosa_rugosa	Rorug02G0108200 Rorug02G0398300 Rorug02G0435100 Rorug03G0104500 Rorug03G0112000 Rorug03G0209100 Rorug04G0021800 Rorug04G0169800 Rorug04G0281500 Rorug04G0390300 Rorug05G0263200 Rorug05G0281200 Rorug06G0472700 Rorug07G0039700 Rorug07G0207300
rosa_samantha	Rh4AG337000 Rh4BG161500 Rh4BG344900 Rh4CG359600 Rh4DG339400 Rh5DG431200
rosa_wichuraiana	Rw4G029380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	92
AccI	GTMKAC	1 cut(s)	236
AccII	CGCG	2 cut(s)	56, 314
AccIII	TCCGGA	1 cut(s)	387
AciI	CCGC	6 cut(s)	66, 116, 314, 318, 335, 338
AclWI	GGATC	2 cut(s)	257, 354
AcoI	YGGCCR	3 cut(s)	36, 315, 368
AcvI	CACGTG	1 cut(s)	295
AcyI	GRCGYC	2 cut(s)	89, 101
AfaI	GTAC	1 cut(s)	8
AfiI	CCNNNNNNNGG	2 cut(s)	167, 168
AhdI	GACNNNNNGTC	3 cut(s)	88, 93, 136
AloI	GAACNNNNNNTCC	2 cut(s)	173, 205
AluBI	AGCT	5 cut(s)	19, 126, 208, 385, 397
AluI	AGCT	5 cut(s)	19, 126, 208, 385, 397
AlwI	GGATC	2 cut(s)	257, 354
AlwNI	CAGNNNCTG	1 cut(s)	211
Ama87I	CYCGRG	1 cut(s)	161
Aor13HI	TCCGGA	1 cut(s)	387
AoxI	GGCC	4 cut(s)	36, 158, 315, 368
ApeKI	GCWGC	5 cut(s)	19, 123, 208, 211, 289
ArsI	GACNNNNNNTTYG	2 cut(s)	173, 205
AspLEI	GCGC	1 cut(s)	56
AspS9I	GGNCC	3 cut(s)	138, 159, 171
AsuC2I	CCSGG	4 cut(s)	142, 162, 163, 175
AsuHPI	GGTGA	1 cut(s)	118
AvaI	CYCGRG	1 cut(s)	161
AvaII	GGWCC	2 cut(s)	138, 171
BalI	TGGCCA	1 cut(s)	38
BbrPI	CACGTG	1 cut(s)	295
BbvCI	CCTCAGC	2 cut(s)	204, 398
BbvI	GCAGC	5 cut(s)	6, 135, 195, 198, 301
BccI	CCATC	1 cut(s)	337
BceAI	ACGGC	2 cut(s)	79, 355
BcnI	CCSGG	4 cut(s)	142, 162, 163, 175
BfmI	CTRYAG	1 cut(s)	212
BisI	GCNGC	9 cut(s)	20, 124, 209, 212, 290, 315, 318, 336, 339
BlpI	GCTNAGC	1 cut(s)	23
BlsI	GCNGC	9 cut(s)	21, 125, 210, 213, 291, 316, 319, 337, 340
Bme1390I	CCNGG	4 cut(s)	142, 162, 163, 175
Bme18I	GGWCC	2 cut(s)	138, 171
BmeRI	GACNNNNNGTC	3 cut(s)	88, 93, 136
BmeT110I	CYCGRG	1 cut(s)	161
BmgT120I	GGNCC	3 cut(s)	138, 159, 171
BmiI	GGNNCC	2 cut(s)	139, 172
BmrFI	CCNGG	4 cut(s)	142, 162, 163, 175
BmsI	GCATC	1 cut(s)	349
Bpu10I	CCTNAGC	2 cut(s)	204, 398
Bpu1102I	GCTNAGC	1 cut(s)	23
BpuMI	CCSGG	4 cut(s)	142, 162, 163, 175
BsaAI	YACGTR	2 cut(s)	295, 325
BsaHI	GRCGYC	2 cut(s)	89, 101
BsaJI	CCNNGG	1 cut(s)	161
BsaWI	WCCGGW	1 cut(s)	387
BsaXI	ACNNNNNCTCC	2 cut(s)	369, 399
Bsc4I	CCNNNNNNNGG	2 cut(s)	167, 168
Bse118I	RCCGGY	2 cut(s)	103, 366
BseAI	TCCGGA	1 cut(s)	387
BseDI	CCNNGG	1 cut(s)	161
BseGI	GGATG	1 cut(s)	364
BseLI	CCNNNNNNNGG	2 cut(s)	167, 168
BseMII	CTCAG	4 cut(s)	37, 218, 341, 389
BseX3I	CGGCCG	2 cut(s)	315, 368
BseXI	GCAGC	5 cut(s)	6, 135, 195, 198, 301
BsgI	GTGCAG	1 cut(s)	308
Bsh1236I	CGCG	2 cut(s)	56, 314
Bsh1285I	CGRYCG	3 cut(s)	81, 318, 371
BshFI	GGCC	4 cut(s)	38, 160, 317, 370
BsiEI	CGRYCG	3 cut(s)	81, 318, 371
BsiHKCI	CYCGRG	1 cut(s)	161
BsiSI	CCGG	6 cut(s)	104, 141, 162, 174, 367, 388
BslI	CCNNNNNNNGG	2 cut(s)	167, 168
BsnI	GGCC	4 cut(s)	38, 160, 317, 370
BsoBI	CYCGRG	1 cut(s)	161
Bsp13I	TCCGGA	1 cut(s)	387
Bsp143I	GATC	3 cut(s)	78, 249, 346
Bsp1720I	GCTNAGC	1 cut(s)	23
BspACI	CCGC	6 cut(s)	66, 116, 314, 318, 335, 338
BspANI	GGCC	4 cut(s)	38, 160, 317, 370
BspCNI	CTCAG	4 cut(s)	36, 217, 342, 390
BspEI	TCCGGA	1 cut(s)	387
BspFNI	CGCG	2 cut(s)	56, 314
BspLI	GGNNCC	2 cut(s)	139, 172
BspMAI	CTGCAG	1 cut(s)	216
BspPI	GGATC	2 cut(s)	257, 354
BsrFI	RCCGGY	2 cut(s)	103, 366
BssAI	RCCGGY	2 cut(s)	103, 366
BssECI	CCNNGG	1 cut(s)	161
BssMI	GATC	3 cut(s)	78, 249, 346
BssNI	GRCGYC	2 cut(s)	89, 101
Bst4CI	ACNGT	3 cut(s)	49, 113, 241
BstACI	GRCGYC	2 cut(s)	89, 101
BstBAI	YACGTR	2 cut(s)	295, 325
BstC8I	GCNNGC	3 cut(s)	266, 364, 368
BstDEI	CTNAG	4 cut(s)	23, 204, 350, 398
BstF5I	GGATG	1 cut(s)	364
BstFNI	CGCG	2 cut(s)	56, 314
BstHHI	GCGC	1 cut(s)	56
BstKTI	GATC	3 cut(s)	81, 252, 349
BstMBI	GATC	3 cut(s)	78, 249, 346
BstMCI	CGRYCG	3 cut(s)	81, 318, 371
BstMWI	GCNNNNNNNGC	2 cut(s)	326, 335
BstNSI	RCATGY	1 cut(s)	303
BstSCI	CCNGG	4 cut(s)	140, 160, 161, 173
BstSFI	CTRYAG	1 cut(s)	212
BstUI	CGCG	2 cut(s)	56, 314
BstV1I	GCAGC	5 cut(s)	6, 135, 195, 198, 301
BstX2I	RGATCY	1 cut(s)	346
BstYI	RGATCY	1 cut(s)	346
BstZI	CGGCCG	2 cut(s)	315, 368
BsuRI	GGCC	4 cut(s)	38, 160, 317, 370
BtgZI	GCGATG	1 cut(s)	356
BtsCI	GGATG	1 cut(s)	364
Cac8I	GCNNGC	3 cut(s)	266, 364, 368
CaiI	CAGNNNCTG	1 cut(s)	211
CciNI	GCGGCCGC	1 cut(s)	315
CfoI	GCGC	1 cut(s)	56
Cfr10I	RCCGGY	2 cut(s)	103, 366
Cfr13I	GGNCC	3 cut(s)	138, 159, 171
Cfr9I	CCCGGG	1 cut(s)	161
CseI	GACGC	3 cut(s)	45, 109, 320
Csp6I	GTAC	1 cut(s)	7
CviAII	CATG	2 cut(s)	300, 355
CviQI	GTAC	1 cut(s)	7
DdeI	CTNAG	4 cut(s)	23, 204, 350, 398
DpnI	GATC	3 cut(s)	80, 251, 348
DpnII	GATC	3 cut(s)	78, 249, 346
DriI	GACNNNNNGTC	3 cut(s)	88, 93, 136
EaeI	YGGCCR	3 cut(s)	36, 315, 368
EagI	CGGCCG	2 cut(s)	315, 368
Eam1105I	GACNNNNNGTC	3 cut(s)	88, 93, 136
EclXI	CGGCCG	2 cut(s)	315, 368
Eco47I	GGWCC	2 cut(s)	138, 171
Eco52I	CGGCCG	2 cut(s)	315, 368
Eco72I	CACGTG	1 cut(s)	295
Eco88I	CYCGRG	1 cut(s)	161
FaeI	CATG	2 cut(s)	303, 358
FaiI	YATR	3 cut(s)	301, 356, 381
FatI	CATG	2 cut(s)	299, 354
FauI	CCCGC	1 cut(s)	59
FblI	GTMKAC	1 cut(s)	236
Fnu4HI	GCNGC	9 cut(s)	20, 124, 209, 212, 290, 315, 318, 336, 339
FokI	GGATG	1 cut(s)	371
Fsp4HI	GCNGC	9 cut(s)	20, 124, 209, 212, 290, 315, 318, 336, 339
GlaI	GCGC	1 cut(s)	55
GluI	GCNGC	9 cut(s)	20, 124, 209, 212, 290, 315, 318, 336, 339
HaeIII	GGCC	4 cut(s)	38, 160, 317, 370
HapII	CCGG	6 cut(s)	104, 141, 162, 174, 367, 388
HgaI	GACGC	3 cut(s)	45, 109, 320
HhaI	GCGC	1 cut(s)	56
Hin1I	GRCGYC	2 cut(s)	89, 101
Hin1II	CATG	2 cut(s)	303, 358
Hin6I	GCGC	1 cut(s)	54
HinP1I	GCGC	1 cut(s)	54
HincII	GTYRAC	1 cut(s)	237
HindII	GTYRAC	1 cut(s)	237
HinfI	GANTC	2 cut(s)	31, 94
HpaII	CCGG	6 cut(s)	104, 141, 162, 174, 367, 388
HphI	GGTGA	1 cut(s)	118
Hpy166II	GTNNAC	3 cut(s)	75, 109, 237
Hpy188I	TCNGA	4 cut(s)	99, 181, 284, 351
Hpy188III	TCNNGA	3 cut(s)	76, 253, 388
Hpy8I	GTNNAC	3 cut(s)	75, 109, 237
Hpy99I	CGWCG	5 cut(s)	61, 94, 157, 238, 241
HpyAV	CCTTC	1 cut(s)	385
HpyCH4III	ACNGT	3 cut(s)	49, 113, 241
HpyCH4IV	ACGT	3 cut(s)	89, 294, 324
HpyCH4V	TGCA	3 cut(s)	214, 289, 303
HpyF10VI	GCNNNNNNNGC	2 cut(s)	326, 335
HpyF3I	CTNAG	4 cut(s)	23, 204, 350, 398
HpySE526I	ACGT	3 cut(s)	89, 294, 324
Hsp92I	GRCGYC	2 cut(s)	89, 101
Hsp92II	CATG	2 cut(s)	303, 358
HspAI	GCGC	1 cut(s)	54
Kpn2I	TCCGGA	1 cut(s)	387
KroI	GCCGGC	1 cut(s)	366
KroNI	GCCGGC	1 cut(s)	368
Kzo9I	GATC	3 cut(s)	78, 249, 346
LmnI	GCTCC	2 cut(s)	390, 394
LpnPI	CCDG	8 cut(s)	20, 117, 154, 175, 187, 282, 380, 401
Lsp1109I	GCAGC	5 cut(s)	6, 135, 195, 198, 301
LweI	GCATC	1 cut(s)	349
MaeII	ACGT	3 cut(s)	89, 294, 324
MaeIII	GTNAC	1 cut(s)	295
MalI	GATC	3 cut(s)	80, 251, 348
MboI	GATC	3 cut(s)	78, 249, 346
MflI	RGATCY	1 cut(s)	346
MlsI	TGGCCA	1 cut(s)	38
MluNI	TGGCCA	1 cut(s)	38
MlyI	GAGTC	1 cut(s)	103
MmeI	TCCRAC	2 cut(s)	159, 262
MnlI	CCTC	8 cut(s)	150, 212, 213, 238, 265, 271, 301, 393
Mox20I	TGGCCA	1 cut(s)	38
MroI	TCCGGA	1 cut(s)	387
MroNI	GCCGGC	1 cut(s)	366
MscI	TGGCCA	1 cut(s)	38
Msp20I	TGGCCA	1 cut(s)	38
MspA1I	CMGCKG	1 cut(s)	208
MspI	CCGG	6 cut(s)	104, 141, 162, 174, 367, 388
MspR9I	CCNGG	4 cut(s)	142, 162, 163, 175
MvnI	CGCG	2 cut(s)	56, 314
MwoI	GCNNNNNNNGC	2 cut(s)	326, 335
NaeI	GCCGGC	1 cut(s)	368
NciI	CCSGG	4 cut(s)	142, 162, 163, 175
NdeII	GATC	3 cut(s)	78, 249, 346
NgoMIV	GCCGGC	1 cut(s)	366
NlaIII	CATG	2 cut(s)	303, 358
NlaIV	GGNNCC	2 cut(s)	139, 172
NmuCI	GTSAC	1 cut(s)	295
NotI	GCGGCCGC	1 cut(s)	315
NspI	RCATGY	1 cut(s)	303
PcsI	WCGNNNNNNNCGW	1 cut(s)	152
PdiI	GCCGGC	1 cut(s)	368
PfeI	GAWTC	1 cut(s)	31
PkrI	GCNGC	9 cut(s)	21, 125, 210, 213, 291, 316, 319, 337, 340
Ple19I	CGATCG	1 cut(s)	81
PleI	GAGTC	1 cut(s)	102
PmaCI	CACGTG	1 cut(s)	295
PmlI	CACGTG	1 cut(s)	295
PpsI	GAGTC	1 cut(s)	102
Ppu21I	YACGTR	2 cut(s)	295, 325
PspCI	CACGTG	1 cut(s)	295
PspN4I	GGNNCC	2 cut(s)	139, 172
PspPI	GGNCC	3 cut(s)	138, 159, 171
PstI	CTGCAG	1 cut(s)	216
PstNI	CAGNNNCTG	1 cut(s)	211
PsuI	RGATCY	1 cut(s)	346
PvuI	CGATCG	1 cut(s)	81
PvuII	CAGCTG	1 cut(s)	208
RsaI	GTAC	1 cut(s)	8
RsaNI	GTAC	1 cut(s)	7
SalI	GTCGAC	1 cut(s)	235
SatI	GCNGC	9 cut(s)	20, 124, 209, 212, 290, 315, 318, 336, 339
Sau3AI	GATC	3 cut(s)	78, 249, 346
Sau96I	GGNCC	3 cut(s)	138, 159, 171
SchI	GAGTC	1 cut(s)	103
ScrFI	CCNGG	4 cut(s)	142, 162, 163, 175
SfaNI	GCATC	1 cut(s)	349
SfcI	CTRYAG	1 cut(s)	212
SgrAI	CRCCGGYG	1 cut(s)	103
SgrDI	CGTCGACG	1 cut(s)	235
SinI	GGWCC	2 cut(s)	138, 171
SmaI	CCCGGG	1 cut(s)	163
SsiI	CCGC	6 cut(s)	66, 116, 314, 318, 335, 338
StyD4I	CCNGG	4 cut(s)	140, 160, 161, 173
TaaI	ACNGT	3 cut(s)	49, 113, 241
TaiI	ACGT	3 cut(s)	92, 297, 327
TaqI	TCGA	7 cut(s)	15, 59, 81, 92, 129, 155, 236
TauI	GCSGC	4 cut(s)	317, 320, 338, 341
TfiI	GAWTC	1 cut(s)	31
TseFI	GTSAC	1 cut(s)	295
TseI	GCWGC	5 cut(s)	19, 123, 208, 211, 289
Tsp45I	GTSAC	1 cut(s)	295
TspGWI	ACGGA	1 cut(s)	320
TspMI	CCCGGG	1 cut(s)	161
VpaK11BI	GGWCC	2 cut(s)	138, 171
XceI	RCATGY	1 cut(s)	303
XmaI	CCCGGG	1 cut(s)	161
XmiI	GTMKAC	1 cut(s)	236
ZraI	GACGTC	1 cut(s)	90

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.