Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0017205

Physical Location & Seq

Genomic Coordinates Forward (+)

52495551 .. 52498124

Gene Structure 2574 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG344500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 186 bp

ATGATGTTTTATCTGCCTATGTTTTTGTATCCAGGTGTGATGTATGGCTCATTTGAGGCTATAAGGTGTAAGGTGCCAGGGGTAGAGAAGATCAGGTATGTTGGGCAAAGGACGATTGGCAGTGCAGCTGTTTTCAGCCTTTTCTTAAGTGCTGGTGCATTGATACATTGTGGAAAGTCATATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Romo1

Protein Analysis

61

Amino Acids

6.77

Weight (kDa)

9.39

Isoelectric Point (pI)

18.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Romo1	PF10247	12 - 57	8e-12	Reactive mitochondrial oxygen species modulator 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0017205)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07910
fragaria_vesca	FvH4_3g28030
malus_domestica	MD00G1126200.v1.1 MD00G1154200.v1.1
prunus_persica	Prupe.4G268400_v2.0.a1
pyrus_communis	pycom03g12330 pycom11g16150
rosa_chinensis	RchiOBHm_Chr5g0050711
rosa_multiflora	Rmu_sc0002117.1_g000026
rosa_roxburghii	Rroxscaffold_1G00030070
rosa_rugosa	Rorug05G0263200
rosa_samantha	Rh5BG344500
rosa_wichuraiana	Rw5G031630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	73
AflII	CTTAAG	1 cut(s)	145
AjnI	CCWGG	2 cut(s)	31, 76
AluBI	AGCT	1 cut(s)	128
AluI	AGCT	1 cut(s)	128
ApeKI	GCWGC	1 cut(s)	125
BanI	GGYRCC	1 cut(s)	73
BbvI	GCAGC	1 cut(s)	137
BciT130I	CCWGG	2 cut(s)	33, 78
BciVI	GTATCC	1 cut(s)	39
BfrI	CTTAAG	1 cut(s)	145
BfuI	GTATCC	1 cut(s)	39
BisI	GCNGC	1 cut(s)	126
BlsI	GCNGC	1 cut(s)	127
Bme1390I	CCNGG	2 cut(s)	33, 78
BmiI	GGNNCC	1 cut(s)	75
BmrFI	CCNGG	2 cut(s)	33, 78
BsaJI	CCNNGG	1 cut(s)	77
BseBI	CCWGG	2 cut(s)	33, 78
BseDI	CCNNGG	1 cut(s)	77
BseXI	GCAGC	1 cut(s)	137
BsgI	GTGCAG	1 cut(s)	144
BshNI	GGYRCC	1 cut(s)	73
Bsp143I	GATC	1 cut(s)	90
BspLI	GGNNCC	1 cut(s)	75
BspT107I	GGYRCC	1 cut(s)	73
BspTI	CTTAAG	1 cut(s)	145
BssECI	CCNNGG	1 cut(s)	77
BssMI	GATC	1 cut(s)	90
Bst2UI	CCWGG	2 cut(s)	33, 78
BstAFI	CTTAAG	1 cut(s)	145
BstKTI	GATC	1 cut(s)	93
BstMBI	GATC	1 cut(s)	90
BstNI	CCWGG	2 cut(s)	33, 78
BstSCI	CCNGG	2 cut(s)	31, 76
BstV1I	GCAGC	1 cut(s)	137
BsuI	GTATCC	1 cut(s)	39
BtsI	GCAGTG	1 cut(s)	127
BtsIMutI	CAGTG	1 cut(s)	127
CviJI	RGCY	4 cut(s)	48, 59, 128, 138
CviKI_1	RGCY	4 cut(s)	48, 59, 128, 138
DpnI	GATC	1 cut(s)	92
DpnII	GATC	1 cut(s)	90
EcoRII	CCWGG	2 cut(s)	31, 76
FaiI	YATR	5 cut(s)	20, 45, 62, 99, 181
Fnu4HI	GCNGC	1 cut(s)	126
Fsp4HI	GCNGC	1 cut(s)	126
GluI	GCNGC	1 cut(s)	126
HpyCH4V	TGCA	2 cut(s)	125, 158
Kzo9I	GATC	1 cut(s)	90
LpnPI	CCDG	6 cut(s)	18, 45, 63, 79, 90, 138
Lsp1109I	GCAGC	1 cut(s)	137
MalI	GATC	1 cut(s)	92
MboI	GATC	1 cut(s)	90
MboII	GAAGA	1 cut(s)	100
MnlI	CCTC	1 cut(s)	49
MseI	TTAA	2 cut(s)	146, 184
MspA1I	CMGCKG	1 cut(s)	128
MspCI	CTTAAG	1 cut(s)	145
MspR9I	CCNGG	2 cut(s)	33, 78
MvaI	CCWGG	2 cut(s)	33, 78
NdeII	GATC	1 cut(s)	90
NlaIV	GGNNCC	1 cut(s)	75
PkrI	GCNGC	1 cut(s)	127
Psp6I	CCWGG	2 cut(s)	31, 76
PspGI	CCWGG	2 cut(s)	31, 76
PspN4I	GGNNCC	1 cut(s)	75
PvuII	CAGCTG	1 cut(s)	128
SaqAI	TTAA	2 cut(s)	146, 184
SatI	GCNGC	1 cut(s)	126
Sau3AI	GATC	1 cut(s)	90
ScrFI	CCNGG	2 cut(s)	33, 78
SetI	ASST	5 cut(s)	37, 68, 75, 98, 130
SgeI	CNNG	6 cut(s)	44, 45, 89, 90, 106, 165
SmlI	CTYRAG	1 cut(s)	145
SmoI	CTYRAG	1 cut(s)	145
StyD4I	CCNGG	2 cut(s)	31, 76
Tru1I	TTAA	2 cut(s)	146, 184
Tru9I	TTAA	2 cut(s)	146, 184
TscAI	CASTG	1 cut(s)	127
TseI	GCWGC	1 cut(s)	125
TspRI	CASTG	1 cut(s)	127
Vha464I	CTTAAG	1 cut(s)	145

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.